Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0004405 Camellia sinensis var. sinensis HOM05D005143 ORTHO05D006404 7.0e-142 507.3 259 100.0
Actinidia15583 Actinidia chinensis HOM05D005143 ORTHO05D006404 1.1e-107 393.7 266 74.4
Actinidia40351 Actinidia chinensis HOM05D005143 ORTHO05D006404 1.8e-105 386.3 266 74.1
Dinv02072 Davidia involucrata HOM05D005143 ORTHO05D006404 8.6e-100 367.5 263 73.0
vmacro08077 Vaccinium macrocarpon HOM05D005143 ORTHO05D006404 2.5e-99 365.9 266 70.3
Hma1.2p1_0013F.1_g008930 Hydrangea macrophylla HOM05D005143 ORTHO05D006404 2.8e-98 362.5 263 70.7
Dinv44320 Davidia involucrata HOM05D005143 ORTHO05D006404 2.6e-96 355.9 264 70.5
Lj6A685T16 Lonicera japonica HOM05D005143 ORTHO05D006404 2.1e-93 346.3 267 67.4
GSVIVG01035046001 Vitis vinifera HOM05D005143 ORTHO05D006404 1.2e-88 330.5 261 65.9
QL06p011304 Quercus lobata HOM05D005143 ORTHO05D006404 1.5e-88 330.1 265 63.8
Cfa015478 Carpinus fangiana HOM05D005143 ORTHO05D006404 2.1e-85 319.7 266 63.5
Manes.15G007000 Manihot esculenta HOM05D005143 ORTHO05D006404 4.6e-85 318.5 265 60.8
Ciclev10007083m.g Citrus clementina HOM05D005143 ORTHO05D006404 1.3e-84 317.0 266 62.0
Glyma.09G039500 Glycine max HOM05D005143 ORTHO05D006404 2.3e-84 316.2 266 63.9
Duzib151G0017 Durio zibethinus HOM05D005143 ORTHO05D006404 3.0e-84 315.8 266 62.4
Cc03_g01170 Coffea canephora HOM05D005143 ORTHO05D006404 1.1e-83 313.9 259 63.3
Haze_01089 Corylus avellana HOM05D005143 ORTHO05D006404 1.5e-83 313.5 266 62.8
TWI09G1317 Tripterygium wilfordii HOM05D005143 ORTHO05D006404 1.5e-83 313.5 263 62.4
Atru.chr4.2951 Acer truncatum HOM05D005143 ORTHO05D006404 1.6e-82 310.1 266 62.4
COL.COLO4_34676 Corchorus olitorius HOM05D005143 ORTHO05D006404 2.8e-82 309.3 266 59.8
Lalb_Chr20g0121021 Lupinus albus HOM05D005143 ORTHO05D006404 2.8e-82 309.3 267 64.4
Prupe.1G125800 Prunus persica HOM05D005143 ORTHO05D006404 1.4e-81 307.0 249 65.1
CiPaw.01G142400 Carya illinoinensis HOM05D005143 ORTHO05D006404 2.4e-81 306.2 266 59.8
Psat1g158200 Pisum sativum HOM05D005143 ORTHO05D006404 3.1e-81 305.8 266 60.5
Glyma.15G144700 Glycine max HOM05D005143 ORTHO05D006404 4.0e-81 305.4 260 63.1
Medtr2g034880 Medicago truncatula HOM05D005143 ORTHO05D006404 6.9e-81 304.7 266 60.2
Sopen01g026590 Solanum pennellii HOM05D005143 ORTHO05D006404 6.9e-81 304.7 263 61.6
Ca_01881_v3 Cicer arietinum L. HOM05D005143 ORTHO05D006404 1.5e-80 303.5 270 60.4
Ca_01895_v3 Cicer arietinum L. HOM05D005143 ORTHO05D006404 1.5e-80 303.5 270 60.4
ClCG05G006400 Citrullus lanatus HOM05D005143 ORTHO05D006404 1.5e-80 303.5 250 61.6
TPR.G27704 Trifolium pratense HOM05D005143 ORTHO05D006404 1.5e-80 303.5 266 59.4
arahy.Tifrunner.gnm1.ann1.UTG064 Arachis hypogaea HOM05D005143 ORTHO05D006404 2.0e-80 303.1 258 63.6
CAN.G1016.6 Capsicum annuum HOM05D005143 ORTHO05D006404 2.0e-80 303.1 264 62.9
Lj6g0005650 Lotus japonicus HOM05D005143 ORTHO05D006404 3.4e-80 302.4 267 61.8
Solyc01g060450.3 Solanum lycopersicum HOM05D005143 ORTHO05D006404 3.4e-80 302.4 263 60.8
PGSC0003DMG400014988 Solanum tuberosum HOM05D005143 ORTHO05D006404 3.4e-80 302.4 263 61.6
Thecc.04G294800 Theobroma cacao HOM05D005143 ORTHO05D006404 3.4e-80 302.4 241 63.9
TAR362G0369 Trochodendron aralioides HOM05D005143 ORTHO05D006404 5.8e-80 301.6 239 64.0
MD16G1159000 Malus domestica HOM05D005143 ORTHO05D006404 1.3e-79 300.4 247 64.0
Potri.010G140400 Populus trichocarpa HOM05D005143 ORTHO05D006404 1.3e-79 300.4 264 59.1
Nitab4.5_0000169g0050 Nicotiana tabacum HOM05D005143 ORTHO05D006404 2.2e-79 299.7 264 61.0
VMungo1309G2864 Vigna mungo HOM05D005143 ORTHO05D006404 2.9e-79 299.3 266 60.5
RcHm_v2.0_Chr4g0424271 Rosa chinensis HOM05D005143 ORTHO05D006404 3.8e-79 298.9 251 63.7
Phvul.009G253600 Phaseolus vulgaris HOM05D005143 ORTHO05D006404 4.9e-79 298.5 260 61.5
Gohir.A10G168900 Gossypium hirsutum HOM05D005143 ORTHO05D006404 1.4e-78 297.0 260 59.6
Gohir.D10G175100 Gossypium hirsutum HOM05D005143 ORTHO05D006404 1.4e-78 297.0 260 59.6
Nitab4.5_0001695g0020 Nicotiana tabacum HOM05D005143 ORTHO05D006404 1.9e-78 296.6 264 60.6
Gorai.011G195900 Gossypium raimondii HOM05D005143 ORTHO05D006404 2.4e-78 296.2 260 60.0
Lalb_Chr18g0058921 Lupinus albus HOM05D005143 ORTHO05D006404 2.4e-78 296.2 266 60.5
CsaV3_3G015020 Cucumis sativus L. HOM05D005143 ORTHO05D006404 5.4e-78 295.0 258 59.7
FvH4_4g19280 Fragaria vesca HOM05D005143 ORTHO05D006404 1.2e-77 293.9 252 63.1
FAN12G3988 Fragaria x ananassa HOM05D005143 ORTHO05D006404 2.7e-77 292.7 252 63.1
Lsat_1_v5_gn_6_115260 Lactuca sativa HOM05D005143 ORTHO05D006404 3.5e-77 292.4 264 58.3
MSTRG.21781 Avicennia marina HOM05D005143 ORTHO05D006404 4.6e-77 292.0 266 58.6
CiPaw.02G077100 Carya illinoinensis HOM05D005143 ORTHO05D006404 6.0e-77 291.6 267 58.1
MD13G1158800 Malus domestica HOM05D005143 ORTHO05D006404 7.9e-77 291.2 240 63.3
Sabra08G0082500 Salix brachista HOM05D005143 ORTHO05D006404 7.9e-77 291.2 248 60.9
Sed0010751 Sechium edule HOM05D005143 ORTHO05D006404 1.3e-76 290.4 250 60.4
THA.LOC104818896 Tarenaya hassleriana HOM05D005143 ORTHO05D006404 1.8e-76 290.0 260 55.4
Sabra10G0108500 Salix brachista HOM05D005143 ORTHO05D006404 5.1e-76 288.5 265 56.6
Aqoxy2G02819 Aquilegia oxysepala HOM05D005143 ORTHO05D006404 1.5e-75 287.0 225 63.6
Cpa.g.sc9.99 Carica papaya HOM05D005143 ORTHO05D006404 1.9e-75 286.6 241 62.7
PGR031G1222 Punica granatum HOM05D005143 ORTHO05D006404 2.5e-75 286.2 243 60.9
MELO3C006698.2 Cucumis melo HOM05D005143 ORTHO05D006404 3.3e-75 285.8 261 57.9
Migut.N00060 Erythranthe guttata HOM05D005143 ORTHO05D006404 4.3e-75 285.4 267 58.1
SalBow5G4838 Salvia bowleyana HOM05D005143 ORTHO05D006404 7.4e-75 284.6 260 58.1
Glyma.17G031200 Glycine max HOM05D005143 ORTHO05D006404 9.6e-75 284.3 252 59.9
Phvul.003G110600 Phaseolus vulgaris HOM05D005143 ORTHO05D006404 9.6e-75 284.3 260 60.0
PSO210G3751 Papaver somniferum HOM05D005143 ORTHO05D006404 1.3e-74 283.9 247 58.7
Sp2g19670 Schrenkiella parvula HOM05D005143 ORTHO05D006404 1.3e-74 283.9 258 56.2
EL10Ac3g04926 Beta vulgaris HOM05D005143 ORTHO05D006404 1.6e-74 283.5 270 55.9
PSO761G0512 Papaver somniferum HOM05D005143 ORTHO05D006404 1.6e-74 283.5 244 59.4
Potri.008G108900 Populus trichocarpa HOM05D005143 ORTHO05D006404 3.7e-74 282.3 239 59.8
Potri.T170901 Populus trichocarpa HOM05D005143 ORTHO05D006404 3.7e-74 282.3 239 59.8
BcaB07g34148 Brassica carinata HOM05D005143 ORTHO05D006404 8.1e-74 281.2 236 59.3
Duzib052G1152 Durio zibethinus HOM05D005143 ORTHO05D006404 2.4e-73 279.6 241 59.3
Thhalv10005363m.g Eutrema salsugineum HOM05D005143 ORTHO05D006404 2.4e-73 279.6 236 58.5
A02p38010 Brassica napus HOM05D005143 ORTHO05D006404 3.1e-73 279.3 236 58.9
BraA02t08785Z Brassica rapa HOM05D005143 ORTHO05D006404 3.1e-73 279.3 236 58.9
AL8G22960 Arabidopsis lyrata HOM05D005143 ORTHO05D006404 4.0e-73 278.9 258 55.0
DCAR_030483 Daucus carota HOM05D005143 ORTHO05D006404 4.0e-73 278.9 238 60.1
Oeu016479.2 Olea europaea HOM05D005143 ORTHO05D006404 6.9e-73 278.1 232 63.4
AUR62035066 Chenopodium quinoa HOM05D005143 ORTHO05D006404 1.2e-72 277.3 274 54.7
DCAR_002501 Daucus carota HOM05D005143 ORTHO05D006404 1.2e-72 277.3 258 58.9
BcaC03g17714 Brassica carinata HOM05D005143 ORTHO05D006404 1.5e-72 276.9 236 58.5
BolC2t11792H Brassica oleracea HOM05D005143 ORTHO05D006404 1.5e-72 276.9 236 58.5
Rhsim04G0232200 Rhododendron simsii HOM05D005143 ORTHO05D006404 2.6e-72 276.2 268 58.2
VMungo1215G3234 Vigna mungo HOM05D005143 ORTHO05D006404 3.4e-72 275.8 266 59.0
C02p57210 Brassica napus HOM05D005143 ORTHO05D006404 4.5e-72 275.4 236 58.1
ECA246G2788 Erigeron canadensis HOM05D005143 ORTHO05D006404 7.6e-72 274.6 269 58.0
Carub.0008s0919 Capsella rubella HOM05D005143 ORTHO05D006404 9.9e-72 274.2 236 57.2
CARHR182240 Cardamine hirsuta HOM05D005143 ORTHO05D006404 9.9e-72 274.2 236 57.6
AT5G49320 Arabidopsis thaliana HOM05D005143 ORTHO05D006404 1.7e-71 273.5 258 54.7
Peaxi162Scf00065g00033 Petunia axillaris HOM05D005143 ORTHO05D006404 1.9e-70 270.0 264 57.6
Ah.04g154920 Amaranthus hybridus HOM05D005143 ORTHO05D006404 5.5e-70 268.5 270 54.4
CANSAT78G1129 Cannabis sativa HOM05D005143 ORTHO05D006404 2.7e-69 266.2 242 57.0
Aa31LG11G7840 Aethionema arabicum HOM05D005143 ORTHO05D006404 4.6e-69 265.4 241 54.4
C07p39840 Brassica napus HOM05D005143 ORTHO05D006404 4.6e-69 265.4 236 56.4
Eucgr.A00195 Eucalyptus grandis HOM05D005143 ORTHO05D006404 6.0e-69 265.0 270 55.9
BolC7t44512H Brassica oleracea HOM05D005143 ORTHO05D006404 1.8e-68 263.5 236 55.9
SGA_v2.0_scaffold119G32680 Striga asiatica HOM05D005143 ORTHO05D006404 6.7e-68 261.5 225 59.1
Sc25g0003440 Simmondsia chinensis HOM05D005143 ORTHO05D006404 1.5e-67 260.4 229 59.4
BcaNung02596 Brassica carinata HOM05D005143 ORTHO05D006404 1.9e-67 260.0 236 55.9
Nn3g21616 Nelumbo nucifera HOM05D005143 ORTHO05D006404 7.4e-67 258.1 248 58.9
FAN07G0192 Fragaria x ananassa HOM05D005143 ORTHO05D006404 1.5e-64 250.4 201 65.2
Hund02954 Selenicereus undatus HOM05D005143 ORTHO05D006404 1.5e-64 250.4 250 53.6
Medtr2g034890 Medicago truncatula HOM05D005143 ORTHO05D006404 2.0e-64 250.0 240 58.3
TPR.G27702 Trifolium pratense HOM05D005143 ORTHO05D006404 2.6e-64 249.6 264 54.9
HanXRQChr03g0093441 Helianthus annuus HOM05D005143 ORTHO05D006404 4.2e-62 242.3 259 54.8
arahy.Tifrunner.gnm1.ann1.PXPP98 Arachis hypogaea HOM05D005143 ORTHO05D006404 1.3e-60 237.3 201 63.2
Sabra08G0082600 Salix brachista HOM05D005143 ORTHO05D006404 2.3e-60 236.5 266 51.1
MBI19_g29991_MAGBIO Magnolia biondii HOM05D005143 ORTHO05D006404 3.1e-57 226.1 218 55.0
FAN12G2949 Fragaria x ananassa HOM05D005143 ORTHO05D006404 7.2e-54 214.9 191 62.8
arahy.Tifrunner.gnm1.ann1.W9GTE1 Arachis hypogaea HOM05D005143 ORTHO05D006404 3.6e-53 212.6 217 55.8
Lalb_Chr12g0200981 Lupinus albus HOM05D005143 ORTHO05D006404 1.0e-52 211.1 246 51.2
SGA_v2.0_scaffold91G28048 Striga asiatica HOM05D005143 ORTHO05D006404 2.3e-52 209.9 231 52.8
arahy.Tifrunner.gnm1.ann1.RF9CFS Arachis hypogaea HOM05D005143 ORTHO05D006404 6.7e-52 208.4 236 52.5
CDE11G0634 Ceratophyllum demersum HOM05D005143 ORTHO05D006404 3.7e-50 202.6 231 47.6
TAR633G2465 Trochodendron aralioides HOM05D005143 ORTHO05D006404 6.5e-47 191.8 167 61.1
Carub.0008s0727 Capsella rubella HOM05D005143 ORTHO05D006404 3.2e-46 189.5 235 46.0
HPP92_001064 Vanilla planifolia HOM05D005143 ORTHO05D006404 3.0e-44 183.0 233 45.1
Nitab4.5_0000531g0070 Nicotiana tabacum HOM05D005143 ORTHO05D006404 9.1e-41 171.4 261 42.5
Nitab4.5_0008735g0010 Nicotiana tabacum HOM05D005143 ORTHO05D006404 3.8e-39 166.0 264 42.4
Oeu006437.1 Olea europaea HOM05D005143 ORTHO05D006404 3.8e-39 166.0 134 62.7
AUR62043573 Chenopodium quinoa HOM05D005143 ORTHO05D006404 2.7e-37 159.8 108 66.7
SEGI_27691 Sequoiadendron giganteum HOM05D005143 ORTHO05D006404 4.4e-35 152.5 229 38.0
Zm00001eb127640 Zea mays HOM05D005143 ORTHO05D006404 1.8e-33 147.1 213 42.7
AUR62016151 Chenopodium quinoa HOM05D005143 ORTHO05D006404 2.4e-33 146.7 140 54.3
SEGI_36016 Sequoiadendron giganteum HOM05D005143 ORTHO05D006404 2.4e-33 146.7 232 36.2
CDE05G0725 Ceratophyllum demersum HOM05D005143 ORTHO05D006404 7.0e-33 145.2 171 46.8
SEGI_03781 Sequoiadendron giganteum HOM05D005143 ORTHO05D006404 2.6e-32 143.3 229 36.2
AagrBONN_evm.TU.Sc2ySwM_368.1032 Anthoceros agrestis HOM05D005143 ORTHO05D006404 6.5e-31 138.7 231 38.1
Os01g0253400 Oryza sativa ssp. japonica HOM05D005143 ORTHO05D006404 3.2e-30 136.3 217 40.1
Hund11951 Selenicereus undatus HOM05D005143 ORTHO05D006404 3.2e-30 136.3 137 50.4
ATR0706G251 Amborella trichopoda HOM05D005143 ORTHO05D006404 1.4e-28 131.0 255 35.3
Nitab4.5_0005463g0090 Nicotiana tabacum HOM05D005143 ORTHO05D006404 2.0e-27 127.1 154 49.4
Lj3C827T17 Lonicera japonica HOM05D005143 ORTHO05D006404 2.2e-18 97.1 74 62.2
arahy.Tifrunner.gnm1.ann1.T63ME6 Arachis hypogaea HOM05D005143 ORTHO05D006404 2.3e-12 77.0 71 59.2
SMO118G0365 Selaginella moellendorffii HOM05D005143 ORTHO05D006404 8.3e-10 68.6 139 30.9
CDE05G1990 Ceratophyllum demersum HOM05D005143 ORTHO05D006404 3.2e-09 66.6 182 30.8
A06p38430 Brassica napus HOM05D005143 ORTHO05D006404 9.2e-09 65.1 78 50.0
BraA06t26757Z Brassica rapa HOM05D005143 ORTHO05D006404 9.2e-09 65.1 78 50.0
MBI09_g03808_MAGBIO Magnolia biondii HOM05D005143 ORTHO05D000022 2.7e-08 63.5 75 46.7
arahy.Tifrunner.gnm1.ann1.A1K99E Arachis hypogaea HOM05D005143 ORTHO05D019760 5.6e-06 55.8 50 58.0


User provided reference genes

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