Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0004401 Camellia sinensis var. sinensis HOM05D006793 ORTHO05D003476 4.6e-39 164.1 82 100.0
Gohir.A01G128900 Gossypium hirsutum HOM05D006793 ORTHO05D003476 9.0e-11 70.1 41 78.0
Gohir.D01G118500 Gossypium hirsutum HOM05D006793 ORTHO05D003476 9.0e-11 70.1 41 78.0
Gorai.002G144500 Gossypium raimondii HOM05D006793 ORTHO05D003476 9.0e-11 70.1 41 78.0
COL.COLO4_32868 Corchorus olitorius HOM05D006793 ORTHO05D003476 1.2e-10 69.7 41 80.5
Sabra08G0019600 Salix brachista HOM05D006793 ORTHO05D003476 1.2e-10 69.7 40 82.5
Duzib114G0110 Durio zibethinus HOM05D006793 ORTHO05D003476 1.5e-10 69.3 41 80.5
Duzib128G0427 Durio zibethinus HOM05D006793 ORTHO05D003476 2.0e-10 68.9 41 80.5
Solyc11g007850.2 Solanum lycopersicum HOM05D006793 ORTHO05D003476 2.6e-10 68.6 41 78.0
Sopen11g003710 Solanum pennellii HOM05D006793 ORTHO05D003476 2.6e-10 68.6 41 78.0
PGSC0003DMG400027329 Solanum tuberosum HOM05D006793 ORTHO05D003476 2.6e-10 68.6 41 78.0
Thecc.10G090800 Theobroma cacao HOM05D006793 ORTHO05D003476 2.6e-10 68.6 41 78.0
Ciclev10031613m.g Citrus clementina HOM05D006793 ORTHO05D003476 4.5e-10 67.8 41 78.0
Sabra10G0179700 Salix brachista HOM05D006793 ORTHO05D003476 5.8e-10 67.4 41 80.5
Dinv31270 Davidia involucrata HOM05D006793 ORTHO05D003476 1.3e-09 66.2 41 78.0
Peaxi162Scf00321g00037 Petunia axillaris HOM05D006793 ORTHO05D003476 1.3e-09 66.2 41 75.6
Potri.008G029500 Populus trichocarpa HOM05D006793 ORTHO05D003476 1.3e-09 66.2 40 80.0
TAR476G0002 Trochodendron aralioides HOM05D006793 ORTHO05D003476 1.3e-09 66.2 41 78.0
TAR633G2614 Trochodendron aralioides HOM05D006793 ORTHO05D009315 1.3e-09 66.2 41 78.0
TAR636G1084 Trochodendron aralioides HOM05D006793 ORTHO05D003476 2.2e-09 65.5 38 84.2
Actinidia06714 Actinidia chinensis HOM05D006793 ORTHO05D003476 2.9e-09 65.1 41 78.0
Cc02_g10490 Coffea canephora HOM05D006793 ORTHO05D003476 3.8e-09 64.7 41 78.0
Dinv20859 Davidia involucrata HOM05D006793 ORTHO05D003476 3.8e-09 64.7 41 78.0
Hma1.2p1_0454F.1_g156300 Hydrangea macrophylla HOM05D006793 ORTHO05D003476 5.0e-09 64.3 41 75.6
CiPaw.01G264600 Carya illinoinensis HOM05D006793 ORTHO05D003476 6.5e-09 63.9 41 78.0
Potri.010G231900 Populus trichocarpa HOM05D006793 ORTHO05D003476 6.5e-09 63.9 41 78.0
PGR142G3005 Punica granatum HOM05D006793 ORTHO05D003476 6.5e-09 63.9 45 73.3
GSVIVG01005025001 Vitis vinifera HOM05D006793 ORTHO05D003476 1.1e-08 63.2 41 78.0
Lalb_Chr02g0151171 Lupinus albus HOM05D006793 ORTHO05D003476 1.9e-08 62.4 41 75.6
Rhsim03G0110800 Rhododendron simsii HOM05D006793 ORTHO05D003476 1.9e-08 62.4 41 75.6
Manes.07G093300 Manihot esculenta HOM05D006793 ORTHO05D003476 2.5e-08 62.0 42 76.2
Nn2g13905 Nelumbo nucifera HOM05D006793 ORTHO05D003476 2.5e-08 62.0 38 78.9
Nitab4.5_0000593g0350 Nicotiana tabacum HOM05D006793 ORTHO05D003476 2.5e-08 62.0 41 73.2
Atru.chr11.746 Acer truncatum HOM05D006793 ORTHO05D003476 3.2e-08 61.6 41 75.6
PSO339G4934 Papaver somniferum HOM05D006793 ORTHO05D003476 4.2e-08 61.2 38 76.3
Lalb_Chr21g0313091 Lupinus albus HOM05D006793 ORTHO05D003476 5.5e-08 60.8 41 73.2
Nn6g35167 Nelumbo nucifera HOM05D006793 ORTHO05D003476 5.5e-08 60.8 41 70.7
MSTRG.404 Avicennia marina HOM05D006793 ORTHO05D003476 7.1e-08 60.5 40 72.5
Cpa.g.sc128.73 Carica papaya HOM05D006793 ORTHO05D003476 7.1e-08 60.5 41 68.3
Nitab4.5_0006383g0010 Nicotiana tabacum HOM05D006793 ORTHO05D003476 7.1e-08 60.5 39 74.4
RcHm_v2.0_Chr1g0336511 Rosa chinensis HOM05D006793 ORTHO05D003476 7.1e-08 60.5 41 73.2
MSTRG.27506 Avicennia marina HOM05D006793 ORTHO05D003476 9.3e-08 60.1 41 73.2
Ca_10462_v3 Cicer arietinum L. HOM05D001977 ORTHO05D002246 9.3e-08 60.1 41 78.0
MD02G1241700 Malus domestica HOM05D006793 ORTHO05D003476 9.3e-08 60.1 41 73.2
arahy.Tifrunner.gnm1.ann1.BT04C1 Arachis hypogaea HOM05D006793 ORTHO05D003476 1.2e-07 59.7 39 76.9
AUR62002713 Chenopodium quinoa HOM05D006793 ORTHO05D003476 1.2e-07 59.7 41 68.3
Aqoxy2G01557 Aquilegia oxysepala HOM05D006793 ORTHO05D003476 2.1e-07 58.9 39 74.4
CANSAT56G4476 Cannabis sativa HOM05D006793 ORTHO05D003476 2.1e-07 58.9 41 70.7
AUR62030173 Chenopodium quinoa HOM05D006793 ORTHO05D003476 2.1e-07 58.9 41 65.9
MBI17_g07069_MAGBIO Magnolia biondii HOM05D006793 ORTHO05D003476 2.1e-07 58.9 38 73.7
Manes.10G053400 Manihot esculenta HOM05D006793 ORTHO05D003476 2.1e-07 58.9 42 73.8
PSO801G0244 Papaver somniferum HOM05D006793 ORTHO05D003476 2.1e-07 58.9 38 73.7
Prupe.2G095200 Prunus persica HOM05D006793 ORTHO05D003476 2.1e-07 58.9 40 72.5
arahy.Tifrunner.gnm1.ann1.U5ZVAW Arachis hypogaea HOM05D006793 ORTHO05D003476 2.7e-07 58.5 39 74.4
Sc20g0001440 Simmondsia chinensis HOM05D006793 ORTHO05D003476 2.7e-07 58.5 41 73.2
Cfa001770 Carpinus fangiana HOM05D006793 ORTHO05D003476 3.5e-07 58.2 41 70.7
Haze_16786 Corylus avellana HOM05D006793 ORTHO05D003476 3.5e-07 58.2 41 70.7
FvH4_7g06800 Fragaria vesca HOM05D006793 ORTHO05D003476 4.6e-07 57.8 41 70.7
FAN06G1743 Fragaria x ananassa HOM05D006793 ORTHO05D003476 4.6e-07 57.8 41 70.7
TPR.G37771 Trifolium pratense HOM05D006793 ORTHO05D003476 4.6e-07 57.8 40 77.5
Eucgr.G02731 Eucalyptus grandis HOM05D006793 ORTHO05D003476 6.1e-07 57.4 43 69.8
TWI38G2135 Tripterygium wilfordii HOM05D006793 ORTHO05D003476 6.1e-07 57.4 41 65.9
Lj5g0011528 Lotus japonicus HOM05D006793 ORTHO05D003476 7.9e-07 57.0 41 73.2
Phvul.007G141300 Phaseolus vulgaris HOM05D006793 ORTHO05D003476 7.9e-07 57.0 44 68.2
FAN01G0293 Fragaria x ananassa HOM05D006793 ORTHO05D003476 1.0e-06 56.6 41 68.3
FAN10G1411 Fragaria x ananassa HOM05D006793 ORTHO05D003476 1.0e-06 56.6 41 68.3
Glyma.20G190600 Glycine max HOM05D006793 ORTHO05D003476 1.0e-06 56.6 41 73.2
SalBow4G0791 Salvia bowleyana HOM05D006793 ORTHO05D003476 1.3e-06 56.2 39 66.7
VMungo0720G1705 Vigna mungo HOM05D006793 ORTHO05D003476 1.3e-06 56.2 44 68.2
MELO3C019853.2 Cucumis melo HOM05D006793 ORTHO05D003476 1.8e-06 55.8 41 65.9
Glyma.10G199900 Glycine max HOM05D006793 ORTHO05D003476 1.8e-06 55.8 41 73.2
Sed0017585 Sechium edule HOM05D006793 ORTHO05D003476 2.3e-06 55.5 41 68.3
SGA_v2.0_scaffold62G21362 Striga asiatica HOM05D006793 ORTHO05D003476 2.3e-06 55.5 41 65.9
ClCG08G007950 Citrullus lanatus HOM05D006793 ORTHO05D003476 3.0e-06 55.1 41 65.9
Medtr1g090853 Medicago truncatula HOM05D006793 ORTHO05D003476 3.0e-06 55.1 41 68.3
CsaV3_2G032770 Cucumis sativus L. HOM05D006793 ORTHO05D003476 3.9e-06 54.7 41 63.4
QL08p052921 Quercus lobata HOM05D006793 ORTHO05D003476 3.9e-06 54.7 39 74.4
Oeu060293.1 Olea europaea HOM05D006793 ORTHO05D003476 5.1e-06 54.3 41 68.3


User provided reference genes

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