Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0004381 Camellia sinensis var. sinensis HOM05D004461 ORTHO05D005543 0.0e+00 1538.5 775 100.0
CSS0001430 Camellia sinensis var. sinensis HOM05D004461 ORTHO05D005543 0.0e+00 1209.5 776 80.2
Actinidia18410 Actinidia chinensis HOM05D004461 ORTHO05D005543 0.0e+00 1189.1 766 79.6
Rhsim09G0007800 Rhododendron simsii HOM05D004461 ORTHO05D005543 0.0e+00 1161.4 776 77.1
Dinv33221 Davidia involucrata HOM05D004461 ORTHO05D005543 0.0e+00 1147.9 774 76.7
Dinv13732 Davidia involucrata HOM05D004461 ORTHO05D005543 2.9e-308 1061.6 774 71.3
RcHm_v2.0_Chr2g0085161 Rosa chinensis HOM05D004461 ORTHO05D005543 5.8e-301 1037.3 774 68.1
QL10p057561 Quercus lobata HOM05D004461 ORTHO05D005543 1.0e-297 1026.5 770 69.1
Atru.chr4.1475 Acer truncatum HOM05D004461 ORTHO05D005543 3.6e-295 1018.1 777 68.5
FvH4_1g00530 Fragaria vesca HOM05D004461 ORTHO05D005543 6.2e-295 1017.3 776 67.4
COL.COLO4_08073 Corchorus olitorius HOM05D004461 ORTHO05D005543 2.4e-294 1015.4 774 65.9
FAN28G0648 Fragaria x ananassa HOM05D004461 ORTHO05D005543 2.4e-294 1015.4 776 67.3
Prupe.7G266700 Prunus persica HOM05D004461 ORTHO05D005543 3.1e-294 1015.0 774 66.9
Thecc.04G163000 Theobroma cacao HOM05D004461 ORTHO05D005543 4.0e-294 1014.6 774 66.5
Haze_00857 Corylus avellana HOM05D004461 ORTHO05D005543 5.3e-294 1014.2 775 67.7
FAN23G0135 Fragaria x ananassa HOM05D004461 ORTHO05D005543 4.5e-293 1011.1 802 65.0
TAR623G0001 Trochodendron aralioides HOM05D004461 ORTHO05D005543 3.8e-292 1008.1 777 67.2
Cc03_g14480 Coffea canephora HOM05D004461 ORTHO05D005543 1.8e-289 999.2 775 66.3
CANSAT56G3181 Cannabis sativa HOM05D004461 ORTHO05D005543 3.0e-289 998.4 786 65.5
Manes.05G186753 Manihot esculenta HOM05D004461 ORTHO05D005543 3.9e-289 998.0 778 66.1
GSVIVG01038186001 Vitis vinifera HOM05D004461 ORTHO05D005543 4.3e-288 994.6 776 67.9
Duzib268G0878 Durio zibethinus HOM05D004461 ORTHO05D005543 5.6e-288 994.2 777 66.0
MD15G1148100 Malus domestica HOM05D004461 ORTHO05D005543 1.9e-283 979.2 774 64.3
MD02G1004400 Malus domestica HOM05D004461 ORTHO05D005543 3.2e-283 978.4 774 64.7
Sopen08g013610 Solanum pennellii HOM05D004461 ORTHO05D005543 2.7e-282 975.3 757 66.3
FAN26G3123 Fragaria x ananassa HOM05D004461 ORTHO05D005543 2.5e-280 968.8 737 67.0
Migut.A00584 Erythranthe guttata HOM05D004461 ORTHO05D005543 2.8e-279 965.3 772 63.5
CAN.G1190.30 Capsicum annuum HOM05D004461 ORTHO05D005543 4.8e-279 964.5 778 64.3
Nn1g07161 Nelumbo nucifera HOM05D004461 ORTHO05D005543 8.2e-279 963.8 777 64.2
MSTRG.9726 Avicennia marina HOM05D004461 ORTHO05D005543 5.3e-278 961.1 776 64.0
Gorai.006G232600 Gossypium raimondii HOM05D004461 ORTHO05D005543 2.0e-277 959.1 776 63.9
Lju470C15G3 Lonicera japonica HOM05D004461 ORTHO05D005543 2.9e-276 955.3 776 65.3
Gohir.D09G212800 Gossypium hirsutum HOM05D004461 ORTHO05D005543 1.2e-274 949.9 776 63.3
Gohir.A09G213618 Gossypium hirsutum HOM05D004461 ORTHO05D005543 3.5e-274 948.3 776 63.7
SalBow1G4521 Salvia bowleyana HOM05D004461 ORTHO05D005543 8.7e-273 943.7 785 61.1
SalBow1G6497 Salvia bowleyana HOM05D004461 ORTHO05D005543 8.7e-273 943.7 785 61.1
Potri.013G128500 Populus trichocarpa HOM05D004461 ORTHO05D005543 5.7e-272 941.0 795 62.3
Sc25g0002880 Simmondsia chinensis HOM05D004461 ORTHO05D005543 4.8e-271 937.9 760 62.9
TWI75G0299 Tripterygium wilfordii HOM05D004461 ORTHO05D005543 6.9e-270 934.1 760 63.4
Sabra13G0107300 Salix brachista HOM05D004461 ORTHO05D005543 2.9e-268 928.7 795 61.6
PGR042G2498 Punica granatum HOM05D004461 ORTHO05D005543 8.5e-268 927.2 769 62.5
Lalb_Chr16g0384381 Lupinus albus HOM05D004461 ORTHO05D005543 1.1e-267 926.8 764 63.0
Phvul.003G059900 Phaseolus vulgaris HOM05D004461 ORTHO05D005543 3.2e-267 925.2 775 62.6
DCAR_005452 Daucus carota HOM05D004461 ORTHO05D005543 1.6e-266 922.9 774 62.3
Lj4g0007039 Lotus japonicus HOM05D004461 ORTHO05D005543 2.1e-266 922.5 775 61.8
VMungo0251G2958 Vigna mungo HOM05D004461 ORTHO05D005543 6.1e-266 921.0 775 62.1
ClCG11G016890 Citrullus lanatus HOM05D004461 ORTHO05D005543 7.9e-266 920.6 781 62.4
Glyma.02G138500 Glycine max HOM05D004461 ORTHO05D005543 1.0e-265 920.2 766 62.0
Hund22530 Selenicereus undatus HOM05D004461 ORTHO05D005543 1.9e-264 916.0 777 60.4
Eucgr.L00012 Eucalyptus grandis HOM05D004461 ORTHO05D005543 6.3e-263 911.0 774 61.4
CsaV3_4G032510 Cucumis sativus L. HOM05D004461 ORTHO05D005543 1.4e-262 909.8 779 61.4
Medtr4g087530 Medicago truncatula HOM05D004461 ORTHO05D005543 2.0e-261 906.0 777 61.0
Psat7g119400 Pisum sativum HOM05D004461 ORTHO05D005543 5.9e-261 904.4 777 61.4
arahy.Tifrunner.gnm1.ann1.3GG3GM Arachis hypogaea HOM05D004461 ORTHO05D005543 3.8e-260 901.7 766 62.0
Ca_18625_v3 Cicer arietinum L. HOM05D004461 ORTHO05D005543 2.5e-259 899.0 777 60.5
Glyma.07G206500 Glycine max HOM05D004461 ORTHO05D005543 9.4e-259 897.1 767 60.8
PSO541G3578 Papaver somniferum HOM05D004461 ORTHO05D005543 6.1e-258 894.4 773 60.4
PSO675G1807 Papaver somniferum HOM05D004461 ORTHO05D005543 1.0e-257 893.6 774 60.2
MELO3C026365.2 Cucumis melo HOM05D004461 ORTHO05D005543 6.7e-257 891.0 797 59.7
Ca_18631_v3 Cicer arietinum L. HOM05D004461 ORTHO05D005543 2.8e-255 885.6 773 60.2
AUR62002415 Chenopodium quinoa HOM05D004461 ORTHO05D005543 2.4e-254 882.5 771 59.9
Aqoxy1G02097 Aquilegia oxysepala HOM05D004461 ORTHO05D005543 5.3e-254 881.3 780 60.0
AUR62023774 Chenopodium quinoa HOM05D004461 ORTHO05D005543 7.0e-254 880.9 771 59.8
EL10Ac3g06109 Beta vulgaris HOM05D004461 ORTHO05D005543 9.1e-254 880.6 834 56.2
Nitab4.5_0000474g0020 Nicotiana tabacum HOM05D004461 ORTHO05D005543 5.9e-253 877.9 658 68.1
arahy.Tifrunner.gnm1.ann1.XYX0FU Arachis hypogaea HOM05D004461 ORTHO05D005543 7.7e-253 877.5 827 57.6
Atru.chr4.1504 Acer truncatum HOM05D004461 ORTHO05D005543 4.2e-243 845.1 680 66.5
ECA233G2329 Erigeron canadensis HOM05D004461 ORTHO05D005543 8.2e-239 830.9 775 58.7
Sp5g03430 Schrenkiella parvula HOM05D004461 ORTHO05D005543 5.3e-238 828.2 776 56.2
BcaC07g40502 Brassica carinata HOM05D004461 ORTHO05D005543 1.6e-237 826.6 777 56.5
C08p34720 Brassica napus HOM05D004461 ORTHO05D005543 1.6e-237 826.6 777 56.8
BolC8t51074H Brassica oleracea HOM05D004461 ORTHO05D005543 1.6e-237 826.6 777 56.8
BraA09t40637Z Brassica rapa HOM05D004461 ORTHO05D005543 2.0e-237 826.2 777 56.5
AT3G59770 Arabidopsis thaliana HOM05D004461 ORTHO05D005543 3.5e-237 825.5 779 56.1
A09p52040 Brassica napus HOM05D004461 ORTHO05D005543 7.7e-237 824.3 777 56.5
A07p24810 Brassica napus HOM05D004461 ORTHO05D005543 1.7e-236 823.2 777 55.6
AL5G41810 Arabidopsis lyrata HOM05D004461 ORTHO05D005543 2.9e-236 822.4 777 55.7
Peaxi162Scf00883g00910 Petunia axillaris HOM05D004461 ORTHO05D005543 8.5e-236 820.8 680 63.1
BraA07t30125Z Brassica rapa HOM05D004461 ORTHO05D005543 1.9e-235 819.7 777 55.3
CARHR170110 Cardamine hirsuta HOM05D004461 ORTHO05D005543 1.9e-235 819.7 772 56.3
Thhalv10005739m.g Eutrema salsugineum HOM05D004461 ORTHO05D005543 2.5e-235 819.3 773 55.8
BcaC08g45004 Brassica carinata HOM05D004461 ORTHO05D005543 7.2e-235 817.8 777 55.0
BolC6t37801H Brassica oleracea HOM05D004461 ORTHO05D005543 7.2e-235 817.8 777 55.0
Carub.0005s2648 Capsella rubella HOM05D004461 ORTHO05D005543 1.2e-234 817.0 777 55.5
C06p26390 Brassica napus HOM05D004461 ORTHO05D005543 2.7e-234 815.8 777 54.8
Solyc08g044400.3 Solanum lycopersicum HOM05D004461 ORTHO05D005543 3.6e-234 815.5 663 64.3
BcaC07g40444 Brassica carinata HOM05D004461 ORTHO05D005543 1.0e-233 813.9 779 56.0
BcaB02g07448 Brassica carinata HOM05D004461 ORTHO05D005543 2.3e-233 812.8 776 55.3
Nn1g03495 Nelumbo nucifera HOM05D004461 ORTHO05D005543 2.3e-233 812.8 683 61.5
Lsat_1_v5_gn_7_77561 Lactuca sativa HOM05D004461 ORTHO05D005543 7.7e-229 797.7 760 57.0
Aa31LG10G14020 Aethionema arabicum HOM05D004461 ORTHO05D005543 2.8e-226 789.3 810 54.6
ECA248G0881 Erigeron canadensis HOM05D004461 ORTHO05D005543 7.5e-224 781.2 762 55.6
ATR0796G101 Amborella trichopoda HOM05D004461 ORTHO05D005543 1.1e-222 777.3 784 53.4
HanXRQChr04g0109651 Helianthus annuus HOM05D004461 ORTHO05D005543 1.1e-219 767.3 772 56.1
HanXRQChr01g0023421 Helianthus annuus HOM05D004461 ORTHO05D005543 3.3e-219 765.8 763 54.5
SGA_v2.0_scaffold90G27634 Striga asiatica HOM05D004461 ORTHO05D005543 2.1e-218 763.1 801 53.9
Gorai.005G010100 Gossypium raimondii HOM05D004461 ORTHO05D005543 8.0e-218 761.1 762 55.9
Gohir.D02G008532 Gossypium hirsutum HOM05D004461 ORTHO05D005543 3.1e-217 759.2 772 55.2
Gohir.A02G008301 Gossypium hirsutum HOM05D004461 ORTHO05D005543 4.0e-217 758.8 773 55.2
Lsat_1_v5_gn_1_74200 Lactuca sativa HOM05D004461 ORTHO05D005543 2.1e-202 709.9 778 53.0
HPP92_017806 Vanilla planifolia HOM05D004461 ORTHO05D005543 4.0e-201 705.7 769 51.0
SGA_v2.0_scaffold96G29048 Striga asiatica HOM05D004461 ORTHO05D005543 1.2e-200 704.1 674 57.1
CDE04G2300 Ceratophyllum demersum HOM05D004461 ORTHO05D005543 6.8e-193 678.3 769 48.4
Nitab4.5_0002660g0040 Nicotiana tabacum HOM05D004461 ORTHO05D005543 1.6e-189 667.2 664 55.9
Duzib212G0381 Durio zibethinus HOM05D004461 ORTHO05D005543 2.7e-173 613.2 441 68.7
unitig_736.g22475 Utricularia gibba HOM05D004461 ORTHO05D005543 9.6e-171 604.7 771 46.8
Zm00001eb208570 Zea mays HOM05D004461 ORTHO05D005543 2.2e-167 593.6 778 46.7
Os01g0355600 Oryza sativa ssp. japonica HOM05D004461 ORTHO05D005543 5.5e-166 589.0 759 45.8
CiPaw.01G169500 Carya illinoinensis HOM05D004461 ORTHO05D005543 3.1e-137 493.4 324 74.7
vmacro00709 Vaccinium macrocarpon HOM05D004461 ORTHO05D005543 5.4e-121 439.5 401 61.8
Eucgr.G01607 Eucalyptus grandis HOM05D004461 ORTHO05D005543 1.0e-119 435.3 308 69.8
Sed0020878 Sechium edule HOM05D004461 ORTHO05D005543 8.5e-119 432.2 453 55.2
THA.LOC104802333 Tarenaya hassleriana HOM05D004461 ORTHO05D005543 1.2e-115 421.8 456 52.6
Ah.13g073400 Amaranthus hybridus HOM05D004461 ORTHO05D005543 2.6e-115 420.6 447 52.1
Sed0010516 Sechium edule HOM05D004461 ORTHO05D005543 2.3e-103 380.9 367 58.6
SMO165G0142 Selaginella moellendorffii HOM05D004461 ORTHO05D005543 7.0e-97 359.4 769 34.1
AagrBONN_evm.TU.Sc2ySwM_362.1413 Anthoceros agrestis HOM05D004461 ORTHO05D005543 8.6e-95 352.4 779 33.4
Mapoly0056s0107 Marchantia polymorpha HOM05D004461 ORTHO05D005543 4.7e-93 346.7 718 33.3
Pp3c2_24100 Physcomitrium patens HOM05D004461 ORTHO05D005543 8.1e-93 345.9 719 33.5
SEGI_23669 Sequoiadendron giganteum HOM05D004461 ORTHO05D005543 1.0e-79 302.4 319 49.5
TAR624G0657 Trochodendron aralioides HOM05D004461 ORTHO05D005543 9.6e-78 295.8 267 59.2
TAR624G0217 Trochodendron aralioides HOM05D004461 ORTHO05D005543 2.4e-76 291.2 240 64.6
SHI26120 Sapria himalayana HOM05D004461 ORTHO05D005543 1.7e-74 285.0 381 45.7
MBI11_g07551_MAGBIO Magnolia biondii HOM05D004461 ORTHO05D005543 1.1e-73 282.3 332 51.2
SEGI_12893 Sequoiadendron giganteum HOM05D004461 ORTHO05D005543 2.9e-58 231.1 364 41.2
Cpa.g.sc343.6 Carica papaya HOM05D004461 ORTHO05D005543 3.3e-54 217.6 520 32.7
CBR_g55037 Chara braunii HOM05D004461 ORTHO05D005543 1.3e-50 205.7 786 26.5
Gohir.D02G008175 Gossypium hirsutum HOM05D004461 ORTHO05D005543 1.5e-43 182.2 215 51.2
TAR624G0560 Trochodendron aralioides HOM05D004461 ORTHO05D005543 2.6e-43 181.4 138 69.6
Solyc08g044410.1 Solanum lycopersicum HOM05D004461 ORTHO05D005543 2.2e-37 161.8 96 77.1
Lsat_1_v5_gn_3_101581 Lactuca sativa HOM05D004461 ORTHO05D029960 5.3e-36 157.1 133 59.4
Lsat_1_v5_gn_2_119641 Lactuca sativa HOM05D004461 ORTHO05D029960 2.2e-34 151.8 135 57.0
Atru.chr4.1505 Acer truncatum HOM05D004461 ORTHO05D005543 1.4e-33 149.1 90 77.8
Nn1g03496 Nelumbo nucifera HOM05D004461 ORTHO05D005543 1.8e-31 142.1 90 72.2
Lsat_1_v5_gn_3_104101 Lactuca sativa HOM05D004461 ORTHO05D005543 6.9e-28 130.2 253 39.1
BcaB02g08211 Brassica carinata HOM05D021787 ORTHO05D005543 9.4e-17 93.2 102 48.0
SHI26123 Sapria himalayana HOM05D004461 ORTHO05D029960 9.4e-17 93.2 76 64.5
Nitab4.5_0000474g0010 Nicotiana tabacum HOM05D004461 ORTHO05D005543 6.8e-07 60.5 105 36.2
Nitab4.5_0002660g0030 Nicotiana tabacum HOM05D004461 ORTHO05D005543 1.5e-06 59.3 103 35.9
Sabra19G0110100 Salix brachista HOM05D002050 ORTHO05D001949 7.5e-06 57.0 40 70.0


User provided reference genes

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