Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0004374 Camellia sinensis var. sinensis HOM05D003667 ORTHO05D004397 2.8e-118 428.7 231 100.0
CSS0013214 Camellia sinensis var. sinensis HOM05D003667 ORTHO05D004397 1.2e-116 423.3 231 99.1
Actinidia06203 Actinidia chinensis HOM05D003667 ORTHO05D004397 8.0e-97 357.5 225 84.0
Actinidia07960 Actinidia chinensis HOM05D003667 ORTHO05D004397 1.0e-96 357.1 225 83.6
Hma1.2p1_0106F.1_g051140 Hydrangea macrophylla HOM05D003667 ORTHO05D004397 1.4e-96 356.7 225 85.8
Rhsim13G0206500 Rhododendron simsii HOM05D003667 ORTHO05D004397 3.1e-93 345.5 228 81.6
Duzib106G0749 Durio zibethinus HOM05D003667 ORTHO05D004397 2.7e-89 332.4 223 78.0
Lj2A112G40 Lonicera japonica HOM05D003667 ORTHO05D004397 1.4e-88 330.1 223 78.5
COL.COLO4_28620 Corchorus olitorius HOM05D003667 ORTHO05D004397 4.0e-88 328.6 223 76.7
Ciclev10022078m.g Citrus clementina HOM05D003667 ORTHO05D004397 8.8e-88 327.4 223 77.1
Thecc.05G244000 Theobroma cacao HOM05D003667 ORTHO05D004397 2.6e-87 325.9 223 76.2
CsaV3_4G012110 Cucumis sativus L. HOM05D003667 ORTHO05D004397 1.7e-86 323.2 227 74.0
TAR623G0153 Trochodendron aralioides HOM05D003667 ORTHO05D004397 1.7e-86 323.2 222 76.1
ClCG04G005470 Citrullus lanatus HOM05D003667 ORTHO05D004397 3.7e-86 322.0 227 74.0
GSVIVG01029952001 Vitis vinifera HOM05D003667 ORTHO05D004397 3.7e-86 322.0 224 74.1
Gohir.A11G231200 Gossypium hirsutum HOM05D003667 ORTHO05D004397 8.3e-86 320.9 223 75.3
Gohir.D11G242600 Gossypium hirsutum HOM05D003667 ORTHO05D004397 8.3e-86 320.9 223 75.8
Gorai.007G256800 Gossypium raimondii HOM05D003667 ORTHO05D004397 1.1e-85 320.5 223 75.3
FAN25G1089 Fragaria x ananassa HOM05D003667 ORTHO05D004397 1.4e-85 320.1 227 73.1
FvH4_3g25040 Fragaria vesca HOM05D003667 ORTHO05D004397 2.4e-85 319.3 227 73.1
MELO3C008823.2 Cucumis melo HOM05D003667 ORTHO05D004397 3.1e-85 318.9 227 72.7
Nn7g37255 Nelumbo nucifera HOM05D003667 ORTHO05D004397 4.1e-85 318.5 222 77.0
FAN11G0144 Fragaria x ananassa HOM05D003667 ORTHO05D004397 5.4e-85 318.2 227 72.7
CANSAT78G1932 Cannabis sativa HOM05D003667 ORTHO05D004397 7.0e-85 317.8 225 74.2
RcHm_v2.0_Chr5g0045181 Rosa chinensis HOM05D003667 ORTHO05D004397 9.1e-85 317.4 223 74.0
Nn6g34578 Nelumbo nucifera HOM05D003667 ORTHO05D004397 1.2e-84 317.0 223 74.4
Eucgr.K01520 Eucalyptus grandis HOM05D003667 ORTHO05D004397 1.6e-84 316.6 226 74.3
MBI17_g12494_MAGBIO Magnolia biondii HOM05D003667 ORTHO05D004397 2.7e-84 315.8 223 74.0
Hund10761 Selenicereus undatus HOM05D003667 ORTHO05D004397 2.7e-84 315.8 229 73.8
FAN21G0540 Fragaria x ananassa HOM05D003667 ORTHO05D004397 7.7e-84 314.3 227 72.2
ClCG02G007830 Citrullus lanatus HOM05D003667 ORTHO05D004397 1.1e-82 310.5 224 73.2
Solyc07g047720.3 Solanum lycopersicum HOM05D003667 ORTHO05D004397 1.1e-82 310.5 231 71.4
Atru.chr2.1481 Acer truncatum HOM05D003667 ORTHO05D004397 1.5e-82 310.1 222 74.3
PSO357G0141 Papaver somniferum HOM05D003667 ORTHO05D004397 1.5e-82 310.1 223 71.7
MBI05_g12099_MAGBIO Magnolia biondii HOM05D003667 ORTHO05D004397 1.9e-82 309.7 211 75.4
Manes.09G137700 Manihot esculenta HOM05D003667 ORTHO05D004397 1.9e-82 309.7 225 73.8
MD02G1195300 Malus domestica HOM05D003667 ORTHO05D004397 2.5e-82 309.3 225 71.1
PSO170G5262 Papaver somniferum HOM05D003667 ORTHO05D004397 4.2e-82 308.5 223 70.4
Sopen07g024170 Solanum pennellii HOM05D003667 ORTHO05D004397 7.2e-82 307.8 229 71.6
TWI38G1994 Tripterygium wilfordii HOM05D003667 ORTHO05D004397 9.5e-82 307.4 223 73.1
Aqoxy1G00535 Aquilegia oxysepala HOM05D003667 ORTHO05D004397 1.6e-81 306.6 226 72.1
Sed0010728 Sechium edule HOM05D003667 ORTHO05D004397 2.1e-81 306.2 224 71.9
PGSC0003DMG400018832 Solanum tuberosum HOM05D003667 ORTHO05D004397 2.1e-81 306.2 229 72.9
PGSC0003DMG400006127 Solanum tuberosum HOM05D003667 ORTHO05D004397 4.7e-81 305.1 238 68.9
Nitab4.5_0001774g0040 Nicotiana tabacum HOM05D003667 ORTHO05D004397 8.0e-81 304.3 233 70.4
CAN.G992.19 Capsicum annuum HOM05D003667 ORTHO05D004397 3.0e-80 302.4 233 70.4
Sabra13G0056100 Salix brachista HOM05D003667 ORTHO05D004397 3.0e-80 302.4 224 71.0
Prupe.2G153200 Prunus persica HOM05D003667 ORTHO05D004397 4.0e-80 302.0 225 72.4
PSO675G2224 Papaver somniferum HOM05D003667 ORTHO05D004397 5.2e-80 301.6 221 69.2
Nitab4.5_0001741g0020 Nicotiana tabacum HOM05D003667 ORTHO05D004397 6.8e-80 301.2 228 72.4
Ca_13917_v3 Cicer arietinum L. HOM05D003667 ORTHO05D004397 2.0e-79 299.7 229 69.4
Oeu035461.1 Olea europaea HOM05D003667 ORTHO05D004397 5.7e-79 298.1 228 68.4
Potri.013G062900 Populus trichocarpa HOM05D003667 ORTHO05D004397 7.5e-79 297.7 223 70.9
Sed0016620 Sechium edule HOM05D003667 ORTHO05D004397 1.3e-78 297.0 222 70.3
Phvul.006G027100 Phaseolus vulgaris HOM05D003667 ORTHO05D004397 2.8e-78 295.8 225 70.7
Medtr3g450200 Medicago truncatula HOM05D003667 ORTHO05D004397 3.7e-78 295.4 227 69.2
PSO541G6155 Papaver somniferum HOM05D003667 ORTHO05D004397 3.7e-78 295.4 221 68.8
HanXRQChr07g0197181 Helianthus annuus HOM05D003667 ORTHO05D004397 1.1e-77 293.9 223 70.0
Glyma.08G304700 Glycine max HOM05D003667 ORTHO05D004397 5.4e-77 291.6 225 67.1
Psat5g209680 Pisum sativum HOM05D003667 ORTHO05D004397 9.2e-77 290.8 228 68.0
Migut.L01870 Erythranthe guttata HOM05D003667 ORTHO05D004397 1.6e-76 290.0 234 67.5
TWI38G1198 Tripterygium wilfordii HOM05D003667 ORTHO05D004397 2.0e-76 289.7 224 69.2
MSTRG.26557 Avicennia marina HOM05D003667 ORTHO05D004397 2.7e-76 289.3 229 67.7
VMungo0540G2144 Vigna mungo HOM05D003667 ORTHO05D004397 3.5e-76 288.9 219 69.9
CiPaw.03G011100 Carya illinoinensis HOM05D003667 ORTHO05D004397 7.8e-76 287.7 220 70.5
Haze_14026 Corylus avellana HOM05D003667 ORTHO05D004397 2.3e-75 286.2 222 70.7
THA.LOC104823778 Tarenaya hassleriana HOM05D003667 ORTHO05D004397 3.8e-75 285.4 226 66.4
Zm00001eb052810 Zea mays HOM05D003667 ORTHO05D004397 6.6e-75 284.6 230 64.8
Glyma.18G114700 Glycine max HOM05D003667 ORTHO05D004397 1.1e-74 283.9 225 67.1
arahy.Tifrunner.gnm1.ann1.FV18MX Arachis hypogaea HOM05D003667 ORTHO05D004397 3.3e-74 282.3 226 66.8
arahy.Tifrunner.gnm1.ann1.7QGR70 Arachis hypogaea HOM05D003667 ORTHO05D004397 7.3e-74 281.2 226 66.4
TPR.G14738 Trifolium pratense HOM05D003667 ORTHO05D004397 7.3e-74 281.2 225 67.6
Lj2g0005685 Lotus japonicus HOM05D003667 ORTHO05D004397 2.1e-73 279.6 225 68.9
TPR.G8769 Trifolium pratense HOM05D003667 ORTHO05D004397 3.6e-73 278.9 226 66.4
Cpa.g.sc28.13 Carica papaya HOM05D003667 ORTHO05D004397 4.7e-73 278.5 228 65.4
Lalb_Chr17g0348151 Lupinus albus HOM05D003667 ORTHO05D004397 4.7e-73 278.5 226 67.7
BraA05t19858Z Brassica rapa HOM05D003667 ORTHO05D004397 1.0e-72 277.3 224 63.8
A05p08960 Brassica napus HOM05D003667 ORTHO05D004397 1.4e-72 276.9 224 63.8
arahy.Tifrunner.gnm1.ann1.VNW58P Arachis hypogaea HOM05D003667 ORTHO05D004397 2.3e-72 276.2 225 66.2
C04p11070 Brassica napus HOM05D003667 ORTHO05D004397 2.3e-72 276.2 224 63.4
BolC4t22755H Brassica oleracea HOM05D003667 ORTHO05D004397 2.3e-72 276.2 224 63.4
Thhalv10017208m.g Eutrema salsugineum HOM05D003667 ORTHO05D004397 5.2e-72 275.0 224 63.4
BcaB02g09321 Brassica carinata HOM05D003667 ORTHO05D004397 1.2e-71 273.9 225 62.7
Carub.0004s1876 Capsella rubella HOM05D003667 ORTHO05D004397 1.2e-71 273.9 224 63.4
Cc03_g11050 Coffea canephora HOM05D003667 ORTHO05D004397 1.2e-71 273.9 221 67.4
SEGI_40073 Sequoiadendron giganteum HOM05D003667 ORTHO05D004397 1.2e-71 273.9 229 61.1
AL4G33130 Arabidopsis lyrata HOM05D003667 ORTHO05D004397 1.5e-71 273.5 224 62.5
CARHR131380 Cardamine hirsuta HOM05D003667 ORTHO05D004397 2.6e-71 272.7 224 62.5
Os03g0655200 Oryza sativa ssp. japonica HOM05D003667 ORTHO05D004397 4.4e-71 271.9 228 62.3
Sp4g19200 Schrenkiella parvula HOM05D003667 ORTHO05D004397 4.4e-71 271.9 224 61.6
AT2G36900 Arabidopsis thaliana HOM05D003667 ORTHO05D004397 9.8e-71 270.8 223 62.8
CDE10G1021 Ceratophyllum demersum HOM05D003667 ORTHO05D004397 1.3e-70 270.4 223 65.5
Dinv05568 Davidia involucrata HOM05D003667 ORTHO05D004397 1.3e-70 270.4 174 84.5
HPP92_027259 Vanilla planifolia HOM05D003667 ORTHO05D004397 3.7e-70 268.9 202 69.8
Psat2g018160 Pisum sativum HOM05D003667 ORTHO05D004397 1.1e-69 267.3 226 63.7
Ca_06238_v3 Cicer arietinum L. HOM05D003667 ORTHO05D004397 1.4e-69 266.9 226 65.0
Medtr5g090520 Medicago truncatula HOM05D003667 ORTHO05D004397 1.4e-69 266.9 226 64.2
HanXRQChr14g0453611 Helianthus annuus HOM05D003667 ORTHO05D004397 1.9e-69 266.5 227 66.1
Aa31LG6G14320 Aethionema arabicum HOM05D003667 ORTHO05D004397 3.2e-69 265.8 223 62.3
Thhalv10014611m.g Eutrema salsugineum HOM05D003667 ORTHO05D004397 1.3e-67 260.4 224 60.3
Carub.0008s1055 Capsella rubella HOM05D003667 ORTHO05D004397 2.3e-67 259.6 227 60.8
Lsat_1_v5_gn_6_31701 Lactuca sativa HOM05D003667 ORTHO05D004397 2.3e-67 259.6 227 65.2
Peaxi162Scf00776g00027 Petunia axillaris HOM05D003667 ORTHO05D004397 2.3e-67 259.6 223 65.5
AL8G24670 Arabidopsis lyrata HOM05D003667 ORTHO05D004397 3.0e-67 259.2 227 60.4
unitig_8.g4943 Utricularia gibba HOM05D003667 ORTHO05D004397 6.6e-67 258.1 225 60.9
CARHR257860 Cardamine hirsuta HOM05D003667 ORTHO05D004397 1.1e-66 257.3 227 59.0
Lsat_1_v5_gn_2_103600 Lactuca sativa HOM05D003667 ORTHO05D004397 2.5e-66 256.1 223 65.5
Sc01g0006150 Simmondsia chinensis HOM05D003667 ORTHO05D004397 4.3e-66 255.4 172 76.7
SGA_v2.0_scaffold41G15803 Striga asiatica HOM05D003667 ORTHO05D004397 4.3e-66 255.4 272 55.1
AT5G50440 Arabidopsis thaliana HOM05D003667 ORTHO05D004397 1.2e-65 253.8 227 59.0
SGA_v2.0_scaffold392G50657 Striga asiatica HOM05D003667 ORTHO05D004397 1.2e-65 253.8 252 57.5
Mapoly0001s0234 Marchantia polymorpha HOM05D003667 ORTHO05D004397 2.0e-63 246.5 225 56.9
AUR62008662 Chenopodium quinoa HOM05D003667 ORTHO05D004397 4.4e-63 245.4 226 60.6
SMO358G0442 Selaginella moellendorffii HOM05D003667 ORTHO05D004397 9.8e-63 244.2 226 57.5
DCAR_013483 Daucus carota HOM05D003667 ORTHO05D004397 1.4e-61 240.4 160 78.1
EL10Ac7g17477 Beta vulgaris HOM05D003667 ORTHO05D004397 1.0e-59 234.2 225 59.6
Ah.02g128310 Amaranthus hybridus HOM05D003667 ORTHO05D004397 8.6e-59 231.1 174 71.8
Rhsim02G0195900 Rhododendron simsii HOM05D003667 ORTHO05D004397 4.3e-58 228.8 142 85.9
Pp3c7_13000 Physcomitrium patens HOM05D003667 ORTHO05D004397 2.8e-57 226.1 246 50.4
ECA238G3478 Erigeron canadensis HOM05D003667 ORTHO05D004397 2.3e-56 223.0 227 57.3
Prupe.7G022400 Prunus persica HOM05D003667 ORTHO05D004397 1.5e-55 220.3 162 73.5
Pp3c11_11980 Physcomitrium patens HOM05D003667 ORTHO05D004397 2.2e-54 216.5 238 51.3
BcaC02g11814 Brassica carinata HOM05D003667 ORTHO05D004397 5.4e-53 211.8 160 67.5
CiPaw.04G007600 Carya illinoinensis HOM05D003667 ORTHO05D004397 7.1e-53 211.5 159 71.7
CSS0044789 Camellia sinensis var. sinensis HOM05D003667 ORTHO05D004397 6.0e-52 208.4 145 82.1
Lj6g0022641 Lotus japonicus HOM05D003667 ORTHO05D004397 3.9e-51 205.7 157 70.7
Dinv25059 Davidia involucrata HOM05D003667 ORTHO05D004397 6.8e-48 194.9 126 83.3
arahy.Tifrunner.gnm1.ann1.B982CP Arachis hypogaea HOM05D003667 ORTHO05D004397 1.1e-45 187.6 226 51.3
MSTRG.10431 Avicennia marina HOM05D003667 ORTHO05D004397 2.7e-44 183.0 142 68.3
Nitab4.5_0001701g0060 Nicotiana tabacum HOM05D003667 ORTHO05D004397 2.5e-42 176.4 223 48.4
unitig_578.g16057 Utricularia gibba HOM05D003667 ORTHO05D004397 2.1e-41 173.3 207 48.3
CDE10G1036 Ceratophyllum demersum HOM05D003667 ORTHO05D004397 5.3e-40 168.7 223 47.1
AagrBONN_evm.TU.Sc2ySwM_117.3822 Anthoceros agrestis HOM05D003667 ORTHO05D004397 2.6e-39 166.4 189 50.3
AagrBONN_evm.TU.Sc2ySwM_362.869 Anthoceros agrestis HOM05D003667 ORTHO05D004397 2.6e-39 166.4 193 49.7
Oeu063104.1 Olea europaea HOM05D003667 ORTHO05D004397 2.2e-38 163.3 237 46.0
Actinidia03933 Actinidia chinensis HOM05D003667 ORTHO05D004397 2.9e-38 162.9 145 63.4
Oeu003870.1 Olea europaea HOM05D003667 ORTHO05D004397 2.4e-37 159.8 126 71.4
Cre12.g554200 Chlamydomonas reinhardtii HOM05D003667 ORTHO05D004397 4.2e-37 159.1 221 43.0
Solyc05g040100.4 Solanum lycopersicum HOM05D003667 ORTHO05D004397 1.5e-34 150.6 188 47.9
Cfa017699 Carpinus fangiana HOM05D003667 ORTHO05D004397 3.3e-34 149.4 113 69.9
Lalb_Chr10g0106501 Lupinus albus HOM05D003667 ORTHO05D004397 5.6e-34 148.7 114 71.1
Haze_20440 Corylus avellana HOM05D003667 ORTHO05D004397 1.3e-33 147.5 113 70.8
BcaC02g10601 Brassica carinata HOM05D003667 ORTHO05D004397 1.7e-30 137.1 184 46.2
MCO05G601 Micromonas commoda HOM05D003667 ORTHO05D004397 6.4e-30 135.2 223 36.8
Rhsim02G0194700 Rhododendron simsii HOM05D003667 ORTHO05D004397 1.9e-29 133.7 85 81.2
Rhsim02G0195800 Rhododendron simsii HOM05D003667 ORTHO05D004397 1.9e-29 133.7 85 81.2
PRCOL_00002098 Prasinoderma coloniale HOM05D003667 ORTHO05D004397 4.2e-29 132.5 233 37.8
AUR62033108 Chenopodium quinoa HOM05D003667 ORTHO05D004397 2.1e-28 130.2 90 78.9
CSS0038188 Camellia sinensis var. sinensis HOM05D003667 ORTHO05D004397 3.0e-27 126.3 86 83.7
Actinidia37807 Actinidia chinensis HOM05D003667 ORTHO05D004397 5.1e-27 125.6 176 48.9
AagrBONN_evm.TU.Sc2ySwM_368.3326 Anthoceros agrestis HOM05D003667 ORTHO05D004397 1.5e-26 124.0 181 43.1
QL07p048797 Quercus lobata HOM05D000002 ORTHO05D000001 1.9e-26 123.6 174 51.1
arahy.Tifrunner.gnm1.ann1.K13S6W Arachis hypogaea HOM05D004599 ORTHO05D005564 4.8e-25 119.0 143 50.3
CAN.G1036.8 Capsicum annuum HOM05D003667 ORTHO05D004397 6.2e-25 118.6 150 50.7
arahy.Tifrunner.gnm1.ann1.835HL2 Arachis hypogaea HOM05D004313 ORTHO05D004397 4.9e-22 109.0 96 57.3
BcaB06g28959 Brassica carinata HOM05D003667 ORTHO05D004397 1.2e-20 104.4 225 34.2
Nitab4.5_0002669g0010 Nicotiana tabacum HOM05D003667 ORTHO05D004397 1.3e-19 100.9 95 62.1
arahy.Tifrunner.gnm1.ann1.SS7A45 Arachis hypogaea HOM05D000726 ORTHO05D004397 7.4e-18 95.1 83 60.2
arahy.Tifrunner.gnm1.ann1.SJAT5A Arachis hypogaea HOM05D003667 ORTHO05D003672 1.3e-17 94.4 96 54.2
CBR_g20321 Chara braunii HOM05D003667 ORTHO05D004397 8.2e-17 91.7 109 44.0
Glyma.02G282800 Glycine max HOM05D003667 ORTHO05D004397 8.2e-17 91.7 114 51.8
Ah.08g213160 Amaranthus hybridus HOM05D003667 ORTHO05D004397 1.1e-16 91.3 69 71.0
Ah.08g213170 Amaranthus hybridus HOM05D003667 ORTHO05D004397 1.1e-16 91.3 84 57.1
arahy.Tifrunner.gnm1.ann1.X6I371 Arachis hypogaea HOM05D003667 ORTHO05D004397 6.9e-16 88.6 75 64.0
C04p25660 Brassica napus HOM05D003667 ORTHO05D004397 6.9e-16 88.6 208 33.2
C05p50890 Brassica napus HOM05D003667 ORTHO05D004397 6.9e-16 88.6 208 33.2
Solyc05g040090.1 Solanum lycopersicum HOM05D003667 ORTHO05D004397 2.6e-15 86.7 81 59.3
Lalb_Chr10g0106511 Lupinus albus HOM05D003667 ORTHO05D004397 3.4e-15 86.3 85 56.5
AUR62033107 Chenopodium quinoa HOM05D003667 ORTHO05D004397 2.9e-14 83.2 51 74.5
FAN16G1288 Fragaria x ananassa HOM05D003667 ORTHO05D004397 2.5e-13 80.1 52 69.2
BraA04t18306Z Brassica rapa HOM05D003667 ORTHO05D004397 4.2e-13 79.3 52 73.1
BolC4t28047H Brassica oleracea HOM05D003667 ORTHO05D004397 1.2e-12 77.8 50 76.0
A04p28220 Brassica napus HOM05D003667 ORTHO05D004397 1.6e-12 77.4 50 76.0
C04p65580 Brassica napus HOM05D003667 ORTHO05D004397 1.6e-12 77.4 50 76.0
VMungo0720G0063 Vigna mungo HOM05D003667 ORTHO05D004397 3.5e-12 76.3 76 55.3
TPR.G36075 Trifolium pratense HOM05D003667 ORTHO05D004397 1.0e-11 74.7 52 65.4
BNapus_Darmor_BZH_scaffold_271p00010 Brassica napus HOM05D003667 ORTHO05D004397 3.9e-11 72.8 195 30.8
FvH4_3g32534 Fragaria vesca HOM05D003667 ORTHO05D004397 2.8e-09 66.6 77 55.8
HanXRQChr04g0115761 Helianthus annuus HOM05D003667 ORTHO05D004397 2.4e-08 63.5 53 62.3
COL.COLO4_28622 Corchorus olitorius HOM05D003667 ORTHO05D004397 1.2e-07 61.2 78 50.0
Medtr1g102820 Medicago truncatula HOM05D003667 ORTHO05D004397 1.2e-07 61.2 64 56.2
Rhsim02G0196100 Rhododendron simsii HOM05D000056 ORTHO05D000019 2.0e-07 60.5 39 79.5
MD05G1212000 Malus domestica HOM05D003667 ORTHO05D246792 7.7e-07 58.5 40 72.5


User provided reference genes

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