Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0004358 Camellia sinensis var. sinensis HOM05D003702 ORTHO05D004653 1.1e-91 339.7 152 100.0
CSS0038999 Camellia sinensis var. sinensis HOM05D003702 ORTHO05D004653 1.3e-63 246.5 113 98.2
Rhsim09G0102000 Rhododendron simsii HOM05D003702 ORTHO05D004653 1.7e-63 246.1 120 91.7
Oeu048389.1 Olea europaea HOM05D003702 ORTHO05D004653 2.7e-61 238.8 121 88.4
Lj6A750T93 Lonicera japonica HOM05D003702 ORTHO05D004653 3.6e-61 238.4 112 94.6
MBI10_g06746_MAGBIO Magnolia biondii HOM05D003702 ORTHO05D004653 7.9e-61 237.3 112 95.5
GSVIVG01011808001 Vitis vinifera HOM05D003702 ORTHO05D004653 1.0e-60 236.9 112 94.6
Haze_00678 Corylus avellana HOM05D003702 ORTHO05D004653 1.8e-60 236.1 136 80.9
Dinv04909 Davidia involucrata HOM05D003702 ORTHO05D004653 2.3e-60 235.7 112 94.6
Nitab4.5_0000881g0100 Nicotiana tabacum HOM05D003702 ORTHO05D004653 2.3e-60 235.7 132 81.8
DCAR_030184 Daucus carota HOM05D003702 ORTHO05D004653 3.0e-60 235.3 112 93.8
Dinv16161 Davidia involucrata HOM05D003702 ORTHO05D004653 3.0e-60 235.3 112 93.8
Nitab4.5_0003886g0040 Nicotiana tabacum HOM05D003702 ORTHO05D004653 3.0e-60 235.3 112 93.8
TAR371G0966 Trochodendron aralioides HOM05D003702 ORTHO05D004653 5.1e-60 234.6 112 93.8
Nn4g24020 Nelumbo nucifera HOM05D003702 ORTHO05D004653 6.7e-60 234.2 112 93.8
Potri.010G117500 Populus trichocarpa HOM05D003702 ORTHO05D004653 6.7e-60 234.2 112 92.9
CAN.G1489.18 Capsicum annuum HOM05D003702 ORTHO05D004653 8.7e-60 233.8 112 92.9
CDE07G1100 Ceratophyllum demersum HOM05D003702 ORTHO05D004653 8.7e-60 233.8 113 91.2
Potri.008G126100 Populus trichocarpa HOM05D003702 ORTHO05D004653 8.7e-60 233.8 112 92.9
QL01p003075 Quercus lobata HOM05D003702 ORTHO05D004653 8.7e-60 233.8 113 91.2
Nitab4.5_0000350g0060 Nicotiana tabacum HOM05D003702 ORTHO05D004653 1.1e-59 233.4 112 92.9
TAR629G3334 Trochodendron aralioides HOM05D003702 ORTHO05D004653 1.5e-59 233.0 112 92.9
Cfa015818 Carpinus fangiana HOM05D003702 ORTHO05D004653 1.9e-59 232.6 112 92.9
Eucgr.B02865 Eucalyptus grandis HOM05D003702 ORTHO05D004653 1.9e-59 232.6 112 92.0
HanXRQChr17g0553131 Helianthus annuus HOM05D003702 ORTHO05D004653 1.9e-59 232.6 113 92.0
Peaxi162Scf00897g00114 Petunia axillaris HOM05D003702 ORTHO05D004653 1.9e-59 232.6 112 92.0
Sabra08G0095000 Salix brachista HOM05D003702 ORTHO05D004653 1.9e-59 232.6 112 92.0
Cc11_g09310 Coffea canephora HOM05D003702 ORTHO05D004653 2.5e-59 232.3 112 92.0
Gohir.A12G141400 Gossypium hirsutum HOM05D003702 ORTHO05D004653 2.5e-59 232.3 112 92.0
Gohir.D12G146300 Gossypium hirsutum HOM05D003702 ORTHO05D004653 2.5e-59 232.3 112 92.0
Gorai.008G157600 Gossypium raimondii HOM05D003702 ORTHO05D004653 2.5e-59 232.3 112 92.0
Sabra10G0086900 Salix brachista HOM05D003702 ORTHO05D004653 2.5e-59 232.3 113 91.2
Sabra10G0088500 Salix brachista HOM05D003702 ORTHO05D004653 2.5e-59 232.3 113 91.2
Solyc05g008580.3 Solanum lycopersicum HOM05D003702 ORTHO05D004653 2.5e-59 232.3 112 92.0
Sopen05g004420 Solanum pennellii HOM05D003702 ORTHO05D004653 2.5e-59 232.3 112 92.0
TWI75G1265 Tripterygium wilfordii HOM05D003702 ORTHO05D004653 2.5e-59 232.3 112 92.0
COL.COLO4_38548 Corchorus olitorius HOM05D003702 ORTHO05D004653 3.3e-59 231.9 112 92.0
HanXRQChr14g0459241 Helianthus annuus HOM05D003702 ORTHO05D004653 3.3e-59 231.9 112 91.1
Oeu036128.1 Olea europaea HOM05D003702 ORTHO05D004653 3.3e-59 231.9 112 92.0
SalBow8G2252 Salvia bowleyana HOM05D003702 ORTHO05D004653 3.3e-59 231.9 112 92.9
Solyc04g007520.3 Solanum lycopersicum HOM05D003702 ORTHO05D004653 3.3e-59 231.9 112 92.0
Sopen04g002600 Solanum pennellii HOM05D003702 ORTHO05D004653 3.3e-59 231.9 112 92.0
PGSC0003DMG400030564 Solanum tuberosum HOM05D003702 ORTHO05D004653 3.3e-59 231.9 112 91.1
ECA246G4421 Erigeron canadensis HOM05D003702 ORTHO05D004653 4.3e-59 231.5 113 90.3
A09p61570 Brassica napus HOM05D003702 ORTHO05D004653 5.7e-59 231.1 112 90.2
BraA09t41530Z Brassica rapa HOM05D003702 ORTHO05D004653 5.7e-59 231.1 112 90.2
CARHR015630 Cardamine hirsuta HOM05D003702 ORTHO05D004653 5.7e-59 231.1 112 90.2
Duzib248G1136 Durio zibethinus HOM05D003702 ORTHO05D004653 5.7e-59 231.1 112 91.1
Thhalv10007726m.g Eutrema salsugineum HOM05D003702 ORTHO05D004653 5.7e-59 231.1 112 90.2
PSO017G5274 Papaver somniferum HOM05D003702 ORTHO05D004653 5.7e-59 231.1 112 92.9
PSO478G4444 Papaver somniferum HOM05D003702 ORTHO05D004653 5.7e-59 231.1 112 92.9
Psat6g222840 Pisum sativum HOM05D003702 ORTHO05D004653 5.7e-59 231.1 112 91.1
MSTRG.2203 Avicennia marina HOM05D003702 ORTHO05D004653 7.4e-59 230.7 112 92.0
BcaC05g25442 Brassica carinata HOM05D003702 ORTHO05D004653 7.4e-59 230.7 112 89.3
A06p11110 Brassica napus HOM05D003702 ORTHO05D004653 7.4e-59 230.7 112 89.3
C05p13230 Brassica napus HOM05D003702 ORTHO05D004653 7.4e-59 230.7 112 89.3
BolC5t30060H Brassica oleracea HOM05D003702 ORTHO05D004653 7.4e-59 230.7 112 89.3
BraA06t24290Z Brassica rapa HOM05D003702 ORTHO05D004653 7.4e-59 230.7 112 89.3
Lsat_1_v5_gn_8_41841 Lactuca sativa HOM05D003702 ORTHO05D004653 7.4e-59 230.7 113 90.3
Nitab4.5_0004597g0050 Nicotiana tabacum HOM05D003702 ORTHO05D004653 7.4e-59 230.7 112 91.1
Atru.chr11.329 Acer truncatum HOM05D003702 ORTHO05D004653 9.7e-59 230.3 112 92.0
Aqoxy5G03879 Aquilegia oxysepala HOM05D003702 ORTHO05D004653 9.7e-59 230.3 112 91.1
BcaB02g06576 Brassica carinata HOM05D003702 ORTHO05D004653 9.7e-59 230.3 112 89.3
Carub.0001s1487 Capsella rubella HOM05D003702 ORTHO05D004653 9.7e-59 230.3 112 89.3
MD13G1033100 Malus domestica HOM05D003702 ORTHO05D004653 9.7e-59 230.3 112 92.0
Thecc.02G215000 Theobroma cacao HOM05D003702 ORTHO05D004653 9.7e-59 230.3 112 91.1
AL1G27170 Arabidopsis lyrata HOM05D003702 ORTHO05D004653 1.3e-58 229.9 112 89.3
EL10Ac1g01504 Beta vulgaris HOM05D003702 ORTHO05D004653 1.3e-58 229.9 112 91.1
Ciclev10015341m.g Citrus clementina HOM05D003702 ORTHO05D004653 1.3e-58 229.9 112 92.0
ECA233G3005 Erigeron canadensis HOM05D003702 ORTHO05D004653 1.3e-58 229.9 112 91.1
Prupe.1G319700 Prunus persica HOM05D003702 ORTHO05D004653 1.3e-58 229.9 112 92.0
Sp1g13450 Schrenkiella parvula HOM05D003702 ORTHO05D004653 1.3e-58 229.9 112 89.3
vmacro12220 Vaccinium macrocarpon HOM05D003702 ORTHO05D004653 1.3e-58 229.9 146 74.7
CAN.G139.1 Capsicum annuum HOM05D003702 ORTHO05D004653 1.6e-58 229.6 112 91.1
CiPaw.05G244900 Carya illinoinensis HOM05D003702 ORTHO05D004653 1.6e-58 229.6 112 91.1
MD16G1035000 Malus domestica HOM05D003702 ORTHO05D004653 1.6e-58 229.6 112 91.1
Sed0018132 Sechium edule HOM05D003702 ORTHO05D004653 1.6e-58 229.6 112 90.2
Sed0021449 Sechium edule HOM05D003702 ORTHO05D004653 1.6e-58 229.6 112 90.2
Ca_30213_v3 Cicer arietinum L. HOM05D003702 ORTHO05D004653 2.2e-58 229.2 112 91.1
MELO3C012286.2 Cucumis melo HOM05D003702 ORTHO05D004653 2.2e-58 229.2 112 91.1
RcHm_v2.0_Chr4g0434061 Rosa chinensis HOM05D003702 ORTHO05D004653 2.2e-58 229.2 112 91.1
ATR0691G123 Amborella trichopoda HOM05D003702 ORTHO05D004653 2.8e-58 228.8 112 91.1
AT1G15110 Arabidopsis thaliana HOM05D003702 ORTHO05D004653 2.8e-58 228.8 112 88.4
Duzib268G1865 Durio zibethinus HOM05D003702 ORTHO05D004653 2.8e-58 228.8 112 90.2
GSVIVG01008367001 Vitis vinifera HOM05D003702 ORTHO05D004653 3.7e-58 228.4 112 88.4
Zm00001eb295120 Zea mays HOM05D003702 ORTHO05D004653 3.7e-58 228.4 121 85.1
BcaB03g14561 Brassica carinata HOM05D003702 ORTHO05D004653 4.8e-58 228.0 112 89.3
BcaNung05515 Brassica carinata HOM05D003702 ORTHO05D004653 4.8e-58 228.0 112 89.3
C08p45160 Brassica napus HOM05D003702 ORTHO05D004653 4.8e-58 228.0 112 89.3
BolC8t52064H Brassica oleracea HOM05D003702 ORTHO05D004653 4.8e-58 228.0 112 89.3
CiPaw.06G015200 Carya illinoinensis HOM05D003702 ORTHO05D004653 4.8e-58 228.0 112 89.3
Migut.E00388 Erythranthe guttata HOM05D003702 ORTHO05D004653 4.8e-58 228.0 112 89.3
FvH4_4g26430 Fragaria vesca HOM05D003702 ORTHO05D004653 4.8e-58 228.0 112 89.3
Sc14g0007250 Simmondsia chinensis HOM05D003702 ORTHO05D004653 4.8e-58 228.0 112 91.1
THA.LOC104805051 Tarenaya hassleriana HOM05D003702 ORTHO05D004653 4.8e-58 228.0 112 89.3
Ah.05g167700 Amaranthus hybridus HOM05D003702 ORTHO05D004653 6.3e-58 227.6 113 87.6
Manes.06G063400 Manihot esculenta HOM05D003702 ORTHO05D004653 6.3e-58 227.6 112 90.2
Manes.14G109300 Manihot esculenta HOM05D003702 ORTHO05D004653 6.3e-58 227.6 112 91.1
TPR.G4874 Trifolium pratense HOM05D003702 ORTHO05D004653 6.3e-58 227.6 112 89.3
ClCG01G006000 Citrullus lanatus HOM05D003702 ORTHO05D004653 8.2e-58 227.3 113 88.5
MELO3C005332.2 Cucumis melo HOM05D003702 ORTHO05D004653 8.2e-58 227.3 113 88.5
CsaV3_5G028680 Cucumis sativus L. HOM05D003702 ORTHO05D004653 8.2e-58 227.3 113 88.5
CsaV3_5G034740 Cucumis sativus L. HOM05D003702 ORTHO05D004653 8.2e-58 227.3 112 90.2
Aa31LG1G40 Aethionema arabicum HOM05D003702 ORTHO05D004653 1.1e-57 226.9 112 87.5
MSTRG.7632 Avicennia marina HOM05D003702 ORTHO05D004653 1.1e-57 226.9 112 90.2
FAN07G0957 Fragaria x ananassa HOM05D003702 ORTHO05D004653 1.1e-57 226.9 112 89.3
FAN12G0213 Fragaria x ananassa HOM05D003702 ORTHO05D004653 1.1e-57 226.9 112 89.3
FAN12G3413 Fragaria x ananassa HOM05D003702 ORTHO05D004653 1.1e-57 226.9 112 89.3
FAN17G2320 Fragaria x ananassa HOM05D003702 ORTHO05D004653 1.1e-57 226.9 112 89.3
Sed0016261 Sechium edule HOM05D003702 ORTHO05D004653 1.1e-57 226.9 113 87.6
VMungo0720G1815 Vigna mungo HOM05D003702 ORTHO05D004653 1.1e-57 226.9 112 89.3
arahy.Tifrunner.gnm1.ann1.8F881C Arachis hypogaea HOM05D003702 ORTHO05D004653 1.4e-57 226.5 112 88.4
arahy.Tifrunner.gnm1.ann1.A779NY Arachis hypogaea HOM05D003702 ORTHO05D004653 1.4e-57 226.5 112 88.4
Glyma.10G268300 Glycine max HOM05D003702 ORTHO05D004653 1.4e-57 226.5 112 89.3
Glyma.20G122800 Glycine max HOM05D003702 ORTHO05D004653 1.4e-57 226.5 112 89.3
FAN22G0804 Fragaria x ananassa HOM05D003702 ORTHO05D004653 1.8e-57 226.1 112 88.4
Lalb_Chr21g0308661 Lupinus albus HOM05D003702 ORTHO05D004653 1.8e-57 226.1 112 89.3
Oeu031392.1 Olea europaea HOM05D003702 ORTHO05D004653 1.8e-57 226.1 112 91.1
Sc04g0005900 Simmondsia chinensis HOM05D003702 ORTHO05D004653 1.8e-57 226.1 112 90.2
unitig_746.g26864 Utricularia gibba HOM05D003702 ORTHO05D004653 1.8e-57 226.1 117 86.3
Medtr1g109120 Medicago truncatula HOM05D003702 ORTHO05D004653 2.4e-57 225.7 112 87.5
Phvul.007G034000 Phaseolus vulgaris HOM05D003702 ORTHO05D004653 3.1e-57 225.3 112 88.4
PGR102G2387 Punica granatum HOM05D003702 ORTHO05D004653 4.1e-57 224.9 112 88.4
Gohir.A09G005100 Gossypium hirsutum HOM05D003702 ORTHO05D004653 5.3e-57 224.6 112 88.4
Gohir.D09G004400 Gossypium hirsutum HOM05D003702 ORTHO05D004653 5.3e-57 224.6 112 88.4
Gorai.006G006000 Gossypium raimondii HOM05D003702 ORTHO05D004653 5.3e-57 224.6 112 88.4
Aqoxy7G02147 Aquilegia oxysepala HOM05D003702 ORTHO05D004653 1.5e-56 223.0 114 86.8
HPP92_008281 Vanilla planifolia HOM05D003702 ORTHO05D004653 1.5e-56 223.0 113 85.8
HPP92_026069 Vanilla planifolia HOM05D003702 ORTHO05D004653 1.5e-56 223.0 113 85.8
AUR62037259 Chenopodium quinoa HOM05D003702 ORTHO05D004653 2.0e-56 222.6 112 87.5
Lj5g0010985 Lotus japonicus HOM05D003702 ORTHO05D004653 2.0e-56 222.6 112 88.4
Sed0022429 Sechium edule HOM05D003702 ORTHO05D004653 2.0e-56 222.6 113 85.8
Zm00001eb103650 Zea mays HOM05D003702 ORTHO05D004653 4.5e-56 221.5 113 88.5
Lalb_Chr06g0165751 Lupinus albus HOM05D003702 ORTHO05D004653 5.9e-56 221.1 122 81.1
Os05g0554400 Oryza sativa ssp. japonica HOM05D003702 ORTHO05D004653 5.9e-56 221.1 112 89.3
Zm00001eb334750 Zea mays HOM05D003702 ORTHO05D004653 5.9e-56 221.1 112 86.6
Zm00001eb343120 Zea mays HOM05D003702 ORTHO05D004653 5.9e-56 221.1 113 88.5
Lalb_Chr02g0145651 Lupinus albus HOM05D003702 ORTHO05D004653 7.7e-56 220.7 111 87.4
Hund20721 Selenicereus undatus HOM05D003702 ORTHO05D004653 1.3e-55 219.9 112 86.6
Zm00001eb125990 Zea mays HOM05D003702 ORTHO05D004653 1.7e-55 219.5 111 87.4
MSTRG.874 Avicennia marina HOM05D003702 ORTHO05D004653 2.9e-55 218.8 112 88.4
Peaxi162Scf00205g01127 Petunia axillaris HOM05D003702 ORTHO05D004653 3.6e-53 211.8 152 67.1
AagrBONN_evm.TU.Sc2ySwM_117.3898 Anthoceros agrestis HOM05D003702 ORTHO05D004653 1.5e-51 206.5 112 79.5
Lsat_1_v5_gn_3_56601 Lactuca sativa HOM05D003702 ORTHO05D004653 2.8e-50 202.2 120 78.3
Mapoly0057s0110 Marchantia polymorpha HOM05D003702 ORTHO05D004653 8.2e-50 200.7 112 78.6
Pp3c4_15740 Physcomitrium patens HOM05D003702 ORTHO05D004653 4.1e-49 198.4 112 75.9
Pp3c26_4170 Physcomitrium patens HOM05D003702 ORTHO05D004653 3.8e-47 191.8 113 74.3
SalBow8G5575 Salvia bowleyana HOM05D003702 ORTHO05D004653 7.0e-41 171.0 93 84.9
HPP92_021847 Vanilla planifolia HOM05D003702 ORTHO05D004653 1.7e-39 166.4 85 85.9
SGA_v2.0_scaffold14G06919 Striga asiatica HOM05D003702 ORTHO05D004653 3.8e-39 165.2 84 90.5
SGA_v2.0_scaffold170G38819 Striga asiatica HOM05D003702 ORTHO05D004653 1.5e-38 163.3 99 78.8
MCO02G069 Micromonas commoda HOM05D003702 ORTHO05D004653 9.4e-38 160.6 120 60.8
Migut.L01016 Erythranthe guttata HOM05D003702 ORTHO05D004653 4.7e-37 158.3 112 69.6
vmacro10616 Vaccinium macrocarpon HOM05D003702 ORTHO05D004653 1.4e-36 156.8 191 46.1
Zm00001eb335270 Zea mays HOM05D003702 ORTHO05D004653 1.3e-34 150.2 85 81.2
ClCG05G022350 Citrullus lanatus HOM05D003702 ORTHO05D004653 1.7e-34 149.8 75 84.0
CDE06G0787 Ceratophyllum demersum HOM05D003702 ORTHO05D004653 4.8e-34 148.3 68 92.6
Lsat_1_v5_gn_0_25341 Lactuca sativa HOM05D006132 ORTHO05D007305 3.1e-33 145.6 79 82.3
Duzib251G0696 Durio zibethinus HOM05D003702 ORTHO05D004653 6.5e-31 137.9 68 85.3
Os01g0683550 Oryza sativa ssp. japonica HOM05D003702 ORTHO05D004653 4.8e-26 121.7 67 80.6
Zm00001eb371470 Zea mays HOM05D003702 ORTHO05D004653 3.1e-25 119.0 63 82.5
AUR62002771 Chenopodium quinoa HOM05D003702 ORTHO05D004653 3.2e-22 109.0 48 95.8
Aqoxy6G00508 Aquilegia oxysepala HOM05D003702 ORTHO05D004653 4.2e-22 108.6 48 95.8
Aqoxy6G00509 Aquilegia oxysepala HOM05D003702 ORTHO05D004653 1.0e-15 87.4 46 80.4
Cpa.g.sc65.87 Carica papaya HOM05D003702 ORTHO05D004653 6.6e-15 84.7 38 92.1
Os01g0118300 Oryza sativa ssp. japonica HOM05D003702 ORTHO05D004653 4.3e-14 82.0 40 85.0
Actinidia16697 Actinidia chinensis HOM05D003702 ORTHO05D004653 5.7e-11 71.6 100 49.0
PRCOL_00004560 Prasinoderma coloniale HOM05D003702 ORTHO05D004653 4.9e-10 68.6 56 46.4
Zm00001eb294100 Zea mays HOM05D003702 ORTHO05D004653 4.1e-09 65.5 31 90.3
SMO116G0260 Selaginella moellendorffii HOM05D003702 ORTHO05D004653 7.8e-08 61.2 24 95.8
Aqoxy7G02189 Aquilegia oxysepala HOM05D003702 ORTHO05D004653 6.6e-07 58.2 114 34.2


User provided reference genes

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