Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0004357 Camellia sinensis var. sinensis HOM05D006658 ORTHO05D008515 3.7e-126 454.9 232 100.0
CSS0022396 Camellia sinensis var. sinensis HOM05D006658 ORTHO05D008515 2.0e-92 342.8 229 79.9
vmacro15292 Vaccinium macrocarpon HOM05D006658 ORTHO05D008515 3.5e-76 288.9 227 67.8
Rhsim02G0017700 Rhododendron simsii HOM05D006658 ORTHO05D008515 2.5e-74 282.7 227 66.1
MBI17_g29609_MAGBIO Magnolia biondii HOM05D006658 ORTHO05D008515 8.1e-73 277.7 228 64.5
TAR365G0289 Trochodendron aralioides HOM05D006658 ORTHO05D008515 5.2e-72 275.0 228 63.2
Actinidia00076 Actinidia chinensis HOM05D006658 ORTHO05D008515 2.2e-70 269.6 229 63.3
Cfa015553 Carpinus fangiana HOM05D006658 ORTHO05D008515 2.2e-70 269.6 224 61.6
Haze_00994 Corylus avellana HOM05D006658 ORTHO05D008515 3.7e-70 268.9 224 61.6
Lsat_1_v5_gn_5_165480 Lactuca sativa HOM05D006658 ORTHO05D008515 8.3e-70 267.7 227 62.1
Aqoxy2G03225 Aquilegia oxysepala HOM05D006658 ORTHO05D008515 1.9e-69 266.5 225 62.7
ECA234G3592 Erigeron canadensis HOM05D006658 ORTHO05D008515 2.4e-69 266.2 227 62.1
Dinv38362 Davidia involucrata HOM05D006658 ORTHO05D008515 3.2e-69 265.8 227 63.4
DCAR_027140 Daucus carota HOM05D006658 ORTHO05D008515 4.1e-69 265.4 227 63.9
CiPaw.02G090200 Carya illinoinensis HOM05D006658 ORTHO05D008515 7.1e-69 264.6 224 58.9
MD13G1180000 Malus domestica HOM05D006658 ORTHO05D008515 9.2e-69 264.2 223 60.1
PSO170G4721 Papaver somniferum HOM05D006658 ORTHO05D008515 9.2e-69 264.2 228 61.0
QL06p005937 Quercus lobata HOM05D006658 ORTHO05D008515 1.6e-68 263.5 226 59.7
HanXRQChr12g0359491 Helianthus annuus HOM05D006658 ORTHO05D008515 2.1e-68 263.1 227 61.2
Manes.15G021400 Manihot esculenta HOM05D006658 ORTHO05D008515 2.1e-68 263.1 225 60.9
TWI53G0915 Tripterygium wilfordii HOM05D006658 ORTHO05D008515 2.7e-68 262.7 228 60.1
PSO407G0441 Papaver somniferum HOM05D006658 ORTHO05D008515 3.5e-68 262.3 228 60.1
Prupe.1G148500 Prunus persica HOM05D006658 ORTHO05D008515 3.5e-68 262.3 225 60.0
Eucgr.E03351 Eucalyptus grandis HOM05D006658 ORTHO05D008515 4.6e-68 261.9 229 60.3
FAN22G2256 Fragaria x ananassa HOM05D006658 ORTHO05D008515 6.0e-68 261.5 223 60.5
Potri.008G199900 Populus trichocarpa HOM05D006658 ORTHO05D008515 1.3e-67 260.4 228 61.0
MELO3C021391.2 Cucumis melo HOM05D006658 ORTHO05D008515 1.7e-67 260.0 228 58.8
Sed0019307 Sechium edule HOM05D006658 ORTHO05D008515 1.7e-67 260.0 228 59.2
Atru.chr4.2671 Acer truncatum HOM05D006658 ORTHO05D008515 2.3e-67 259.6 227 60.4
FvH4_4g14170 Fragaria vesca HOM05D006658 ORTHO05D008515 2.3e-67 259.6 223 59.2
FAN12G0854 Fragaria x ananassa HOM05D006658 ORTHO05D008515 2.3e-67 259.6 223 59.2
RcHm_v2.0_Chr4g0419051 Rosa chinensis HOM05D006658 ORTHO05D008515 3.9e-67 258.8 223 59.2
Migut.N00139 Erythranthe guttata HOM05D006658 ORTHO05D008515 6.6e-67 258.1 173 73.4
Os05g0400600 Oryza sativa ssp. japonica HOM05D006658 ORTHO05D008515 6.6e-67 258.1 226 60.6
arahy.Tifrunner.gnm1.ann1.V9Y9T8 Arachis hypogaea HOM05D006658 ORTHO05D008515 1.1e-66 257.3 224 61.6
CANSAT78G1897 Cannabis sativa HOM05D006658 ORTHO05D008515 1.5e-66 256.9 223 58.7
SalBow5G3198 Salvia bowleyana HOM05D006658 ORTHO05D008515 1.5e-66 256.9 175 73.1
MSTRG.24762 Avicennia marina HOM05D006658 ORTHO05D008515 1.9e-66 256.5 228 59.6
CsaV3_6G005460 Cucumis sativus L. HOM05D006658 ORTHO05D008515 2.5e-66 256.1 228 58.3
RcHm_v2.0_Chr2g0086241 Rosa chinensis HOM05D006658 ORTHO05D008515 2.5e-66 256.1 212 60.8
ATR0626G018 Amborella trichopoda HOM05D006658 ORTHO05D007095 3.3e-66 255.8 227 59.5
Gorai.006G218300 Gossypium raimondii HOM05D006658 ORTHO05D008515 3.3e-66 255.8 228 60.1
FAN07G2752 Fragaria x ananassa HOM05D006658 ORTHO05D008515 4.3e-66 255.4 173 71.7
Sabra08G0161000 Salix brachista HOM05D006658 ORTHO05D008515 4.3e-66 255.4 237 59.5
GSVIVG01017866001 Vitis vinifera HOM05D006658 ORTHO05D008515 4.3e-66 255.4 235 60.0
Phvul.006G155900 Phaseolus vulgaris HOM05D006658 ORTHO05D008515 9.5e-66 254.2 226 58.4
ClCG06G005690 Citrullus lanatus HOM05D006658 ORTHO05D008515 1.2e-65 253.8 228 57.9
Ciclev10005116m.g Citrus clementina HOM05D006658 ORTHO05D008515 1.6e-65 253.4 225 59.6
RcHm_v2.0_Chr5g0064291 Rosa chinensis HOM05D006658 ORTHO05D008515 1.6e-65 253.4 173 71.1
Duzib212G0844 Durio zibethinus HOM05D006658 ORTHO05D008515 2.1e-65 253.1 214 62.1
Nn4g26153 Nelumbo nucifera HOM05D006658 ORTHO05D008515 2.8e-65 252.7 175 70.9
arahy.Tifrunner.gnm1.ann1.Q3CYV3 Arachis hypogaea HOM05D006658 ORTHO05D008515 4.7e-65 251.9 224 60.3
Cpa.g.sc16.52 Carica papaya HOM05D006658 ORTHO05D008515 6.2e-65 251.5 228 59.2
VMungo0540G0090 Vigna mungo HOM05D006658 ORTHO05D008515 6.2e-65 251.5 224 58.9
Zm00001eb346810 Zea mays HOM05D006658 ORTHO05D008515 1.1e-64 250.8 224 59.4
SGA_v2.0_scaffold107G30765 Striga asiatica HOM05D006658 ORTHO05D008515 2.4e-64 249.6 229 58.1
PGR065G0004 Punica granatum HOM05D006658 ORTHO05D008515 4.0e-64 248.8 226 57.1
Thecc.04G218900 Theobroma cacao HOM05D006658 ORTHO05D008515 5.2e-64 248.4 227 58.6
Sc13g0003830 Simmondsia chinensis HOM05D006658 ORTHO05D008515 1.2e-63 247.3 226 58.4
PGSC0003DMG400004353 Solanum tuberosum HOM05D006658 ORTHO05D008515 2.6e-63 246.1 229 57.2
CAN.G522.10 Capsicum annuum HOM05D006658 ORTHO05D008515 3.4e-63 245.7 227 58.1
Cc03_g02920 Coffea canephora HOM05D006658 ORTHO05D008515 4.4e-63 245.4 229 58.1
PGR004G0022 Punica granatum HOM05D006658 ORTHO05D008515 5.8e-63 245.0 172 68.6
Sopen01g032090 Solanum pennellii HOM05D006658 ORTHO05D008515 5.8e-63 245.0 229 57.2
HPP92_001401 Vanilla planifolia HOM05D006658 ORTHO05D008515 5.8e-63 245.0 226 58.8
Solyc01g080300.4 Solanum lycopersicum HOM05D006658 ORTHO05D008515 7.6e-63 244.6 229 56.8
BcaB04g19174 Brassica carinata HOM05D006658 ORTHO05D008515 1.3e-62 243.8 227 58.1
Lalb_Chr15g0087271 Lupinus albus HOM05D006658 ORTHO05D008515 1.3e-62 243.8 224 58.5
Glyma.15G101900 Glycine max HOM05D006658 ORTHO05D008515 1.7e-62 243.4 224 57.1
Lj6g0017983 Lotus japonicus HOM05D006658 ORTHO05D008515 1.7e-62 243.4 224 58.0
Medtr2g021220 Medicago truncatula HOM05D006658 ORTHO05D008515 3.8e-62 242.3 224 57.1
BcaC01g03498 Brassica carinata HOM05D006658 ORTHO05D008515 1.1e-61 240.7 227 57.3
A03p42320 Brassica napus HOM05D006658 ORTHO05D008515 1.1e-61 240.7 227 57.3
BraA03t13384Z Brassica rapa HOM05D006658 ORTHO05D008515 1.1e-61 240.7 227 57.3
Thhalv10020897m.g Eutrema salsugineum HOM05D006658 ORTHO05D008515 1.9e-61 240.0 227 56.8
CARHR097540 Cardamine hirsuta HOM05D006658 ORTHO05D008515 2.4e-61 239.6 227 55.9
Aa31sc174G10 Aethionema arabicum HOM05D006658 ORTHO05D008515 3.2e-61 239.2 227 56.8
Carub.0003s2162 Capsella rubella HOM05D006658 ORTHO05D008515 5.4e-61 238.4 227 56.4
Sp3g19610 Schrenkiella parvula HOM05D006658 ORTHO05D008515 5.4e-61 238.4 227 56.4
TPR.G28916 Trifolium pratense HOM05D000887 ORTHO05D000908 7.1e-61 238.0 224 57.1
AL3G35700 Arabidopsis lyrata HOM05D006658 ORTHO05D008515 2.1e-60 236.5 227 55.9
AT3G21580 Arabidopsis thaliana HOM05D006658 ORTHO05D008515 2.7e-60 236.1 227 55.9
Ca_00605_v3 Cicer arietinum L. HOM05D000887 ORTHO05D000908 2.7e-60 236.1 224 56.2
Peaxi162Scf00095g00723 Petunia axillaris HOM05D006658 ORTHO05D008515 3.5e-60 235.7 232 55.2
Gohir.A09G200700 Gossypium hirsutum HOM05D006658 ORTHO05D008515 1.3e-59 233.8 203 62.1
Gohir.D09G194900 Gossypium hirsutum HOM05D006658 ORTHO05D008515 1.3e-59 233.8 203 62.1
Mapoly0015s0173 Marchantia polymorpha HOM05D006658 ORTHO05D008515 5.1e-59 231.9 224 54.9
BolC3t17462H Brassica oleracea HOM05D006658 ORTHO05D008515 8.7e-59 231.1 227 55.5
THA.LOC104820222 Tarenaya hassleriana HOM05D006658 ORTHO05D008515 8.7e-59 231.1 226 54.9
SEGI_40702 Sequoiadendron giganteum HOM05D006658 ORTHO05D008515 1.1e-58 230.7 226 52.7
C03p51780 Brassica napus HOM05D006658 ORTHO05D008515 1.5e-58 230.3 227 55.5
Manes.07G121800 Manihot esculenta HOM05D006658 ORTHO05D008515 1.9e-58 229.9 159 71.7
RcHm_v2.0_Chr5g0045591 Rosa chinensis HOM05D006658 ORTHO05D008515 2.5e-58 229.6 171 66.1
Nitab4.5_0003070g0030 Nicotiana tabacum HOM05D006658 ORTHO05D008515 1.2e-57 227.3 261 50.2
EL10Ac4g08937 Beta vulgaris HOM05D006658 ORTHO05D008515 2.8e-57 226.1 228 53.5
Ah.06g191650 Amaranthus hybridus HOM05D006658 ORTHO05D008515 6.2e-57 224.9 173 64.7
Hund26050 Selenicereus undatus HOM05D006658 ORTHO05D008515 3.4e-55 219.2 150 72.0
CDE09G1086 Ceratophyllum demersum HOM05D002356 ORTHO05D002546 5.8e-55 218.4 150 73.3
Nn1g02127 Nelumbo nucifera HOM05D006658 ORTHO05D008515 1.7e-54 216.9 150 72.7
Pp3c16_5660 Physcomitrium patens HOM05D006658 ORTHO05D008515 1.7e-54 216.9 228 50.0
Lj3A803G20 Lonicera japonica HOM05D006658 ORTHO05D008515 8.4e-54 214.5 173 64.2
CDE02G1914 Ceratophyllum demersum HOM05D006658 ORTHO05D008515 1.4e-53 213.8 202 58.4
AUR62004779 Chenopodium quinoa HOM05D006658 ORTHO05D008515 3.2e-53 212.6 205 56.1
Psat5g176560 Pisum sativum HOM05D006658 ORTHO05D008515 1.3e-51 207.2 231 51.5
unitig_61.g26008 Utricularia gibba HOM05D006658 ORTHO05D008515 1.7e-51 206.8 160 61.9
SMO361G0230 Selaginella moellendorffii HOM05D006658 ORTHO05D008515 5.1e-51 205.3 226 50.0
Glyma.13G210900 Glycine max HOM05D006658 ORTHO05D008515 7.3e-50 201.4 172 60.5
COL.COLO4_21620 Corchorus olitorius HOM05D006658 ORTHO05D008515 9.6e-50 201.1 228 53.5
AagrBONN_evm.TU.Sc2ySwM_228.2900 Anthoceros agrestis HOM05D006670 ORTHO05D008715 1.4e-45 187.2 170 53.5
Psat1g186040 Pisum sativum HOM05D006658 ORTHO05D008515 4.6e-44 182.2 179 55.9
AUR62003399 Chenopodium quinoa HOM05D006658 ORTHO05D008515 4.0e-40 169.1 228 44.7
Cre12.g533950 Chlamydomonas reinhardtii HOM05D006658 ORTHO05D008515 3.3e-34 149.4 174 44.8
Peaxi162Scf00095g00724 Petunia axillaris HOM05D006658 ORTHO05D008515 5.3e-32 142.1 120 62.5
MCO01G250 Micromonas commoda HOM05D006658 ORTHO05D008515 2.2e-30 136.7 183 38.8
PRCOL_00004089 Prasinoderma coloniale HOM05D006658 ORTHO05D008515 2.5e-29 133.3 176 41.5
Actinidia32371 Actinidia chinensis HOM05D006658 ORTHO05D008515 2.2e-25 120.2 82 78.0
Actinidia08452 Actinidia chinensis HOM05D006658 ORTHO05D008515 1.8e-24 117.1 82 74.4
Psat2g070960 Pisum sativum HOM05D006658 ORTHO05D008515 1.0e-22 111.3 95 57.9
HPP92_001340 Vanilla planifolia HOM05D006658 ORTHO05D008515 2.2e-22 110.2 82 62.2
SEGI_22040 Sequoiadendron giganteum HOM05D006658 ORTHO05D008515 9.4e-21 104.8 122 49.2
Nitab4.5_0000059g0030 Nicotiana tabacum HOM05D006658 ORTHO05D008979 1.8e-16 90.5 162 40.7
HanXRQChr09g0256171 Helianthus annuus HOM05D006658 ORTHO05D008515 2.6e-15 86.7 64 62.5
Oeu023652.1 Olea europaea HOM05D006658 ORTHO05D008515 1.4e-08 64.3 139 36.0
HanXRQChr04g0123631 Helianthus annuus HOM05D034347 ORTHO05D227534 1.8e-08 63.9 46 73.9


User provided reference genes

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