Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0004354 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 3.0e-262 907.9 441 100.0
CSS0042673 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 1.6e-255 885.6 434 98.4
Dinv10589 Davidia involucrata HOM05D003877 ORTHO05D004647 1.7e-217 759.2 434 83.2
CSS0043221 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 6.8e-214 747.3 412 87.4
Actinidia29719 Actinidia chinensis HOM05D003877 ORTHO05D004647 8.6e-209 730.3 431 81.9
vmacro17690 Vaccinium macrocarpon HOM05D003877 ORTHO05D004647 9.5e-208 726.9 434 81.1
Rhsim03G0146600 Rhododendron simsii HOM05D003877 ORTHO05D004647 1.7e-204 716.1 409 82.6
CSS0044757 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 4.2e-203 711.4 386 87.8
TAR623G0028 Trochodendron aralioides HOM05D003877 ORTHO05D004647 7.8e-202 707.2 433 76.4
RcHm_v2.0_Chr1g0370931 Rosa chinensis HOM05D003877 ORTHO05D004647 1.1e-198 696.8 428 75.9
Haze_17269 Corylus avellana HOM05D003877 ORTHO05D004647 1.8e-198 696.0 436 76.8
MD01G1157500 Malus domestica HOM05D003877 ORTHO05D004647 2.4e-198 695.7 426 76.8
vmacro10004 Vaccinium macrocarpon HOM05D003877 ORTHO05D004647 4.0e-198 694.9 526 67.5
Manes.10G009000 Manihot esculenta HOM05D003877 ORTHO05D004647 9.0e-198 693.7 434 75.8
GSVIVG01032757001 Vitis vinifera HOM05D003877 ORTHO05D004647 3.4e-197 691.8 434 74.9
Sopen05g031010 Solanum pennellii HOM05D003877 ORTHO05D004647 6.4e-196 687.6 434 74.9
Cc02_g06060 Coffea canephora HOM05D003877 ORTHO05D004647 5.4e-195 684.5 434 73.7
DCAR_011841 Daucus carota HOM05D003877 ORTHO05D004647 4.6e-194 681.4 435 74.9
Ca_15152_v3 Cicer arietinum L. HOM05D003877 ORTHO05D004647 1.0e-193 680.2 420 76.7
GSVIVG01032758001 Vitis vinifera HOM05D003877 ORTHO05D004647 1.0e-193 680.2 414 77.3
FAN01G0819 Fragaria x ananassa HOM05D003877 ORTHO05D004647 1.7e-193 679.5 421 74.8
FAN10G2809 Fragaria x ananassa HOM05D003877 ORTHO05D004647 1.7e-193 679.5 421 74.8
Peaxi162Scf01149g00319 Petunia axillaris HOM05D003877 ORTHO05D004647 3.0e-193 678.7 434 73.5
FvH4_7g25060 Fragaria vesca HOM05D003877 ORTHO05D004647 8.7e-193 677.2 421 74.6
Glyma.18G024700 Glycine max HOM05D003877 ORTHO05D004647 1.1e-192 676.8 423 76.1
Potri.008G072600 Populus trichocarpa HOM05D003877 ORTHO05D004647 1.5e-192 676.4 434 74.2
Ciclev10031326m.g Citrus clementina HOM05D003877 ORTHO05D004647 2.5e-192 675.6 434 73.5
FAN06G1542 Fragaria x ananassa HOM05D003877 ORTHO05D004647 2.5e-192 675.6 421 74.3
FAN03G0426 Fragaria x ananassa HOM05D003877 ORTHO05D004647 5.6e-192 674.5 421 74.1
Nitab4.5_0003391g0120 Nicotiana tabacum HOM05D003877 ORTHO05D004647 5.6e-192 674.5 421 76.2
TAR633G0464 Trochodendron aralioides HOM05D003877 ORTHO05D004647 7.3e-192 674.1 413 75.8
Lj6g0018000 Lotus japonicus HOM05D003877 ORTHO05D004647 3.6e-191 671.8 421 75.1
TWI73G0349 Tripterygium wilfordii HOM05D003877 ORTHO05D004647 4.8e-191 671.4 413 75.5
Nn7g35848 Nelumbo nucifera HOM05D003877 ORTHO05D004647 1.1e-190 670.2 433 72.3
Lalb_Chr08g0231521 Lupinus albus HOM05D003877 ORTHO05D004647 1.4e-190 669.8 421 75.1
Phvul.006G048800 Phaseolus vulgaris HOM05D003877 ORTHO05D004647 2.4e-190 669.1 421 75.5
QL08p063706 Quercus lobata HOM05D003877 ORTHO05D004647 2.4e-190 669.1 433 74.8
Potri.010G184600 Populus trichocarpa HOM05D003877 ORTHO05D004647 3.1e-190 668.7 434 73.0
Glyma.05G080100 Glycine max HOM05D003877 ORTHO05D004647 6.9e-190 667.5 421 75.5
CAN.G1268.9 Capsicum annuum HOM05D003877 ORTHO05D004647 9.0e-190 667.2 434 72.8
Gorai.010G195300 Gossypium raimondii HOM05D003877 ORTHO05D004647 9.0e-190 667.2 434 70.3
vmacro17691 Vaccinium macrocarpon HOM05D003877 ORTHO05D004647 9.0e-190 667.2 440 74.8
Gohir.D06G167400 Gossypium hirsutum HOM05D003877 ORTHO05D004647 2.2e-188 662.5 434 70.0
Medtr3g071580 Medicago truncatula HOM05D003877 ORTHO05D004647 2.9e-188 662.1 429 73.7
TWI09G1304 Tripterygium wilfordii HOM05D003877 ORTHO05D004647 2.9e-188 662.1 411 74.9
arahy.Tifrunner.gnm1.ann1.EHZF9M Arachis hypogaea HOM05D003877 ORTHO05D004647 8.4e-188 660.6 426 72.3
Gohir.A06G161800 Gossypium hirsutum HOM05D003877 ORTHO05D004647 1.1e-187 660.2 434 69.8
Gorai.012G079000 Gossypium raimondii HOM05D003877 ORTHO05D004647 1.9e-187 659.4 434 71.4
CiPaw.02G195400 Carya illinoinensis HOM05D003877 ORTHO05D004647 2.4e-187 659.1 435 72.9
VMungo0540G0037 Vigna mungo HOM05D003877 ORTHO05D004647 2.4e-187 659.1 421 74.6
PGR142G4288 Punica granatum HOM05D003877 ORTHO05D004647 5.4e-187 657.9 436 71.1
Prupe.2G255400 Prunus persica HOM05D003877 ORTHO05D004647 3.5e-186 655.2 405 75.8
Lj1C785G15 Lonicera japonica HOM05D003877 ORTHO05D004647 4.6e-186 654.8 407 75.4
arahy.Tifrunner.gnm1.ann1.ZCM4RK Arachis hypogaea HOM05D003877 ORTHO05D004647 6.0e-186 654.4 431 71.5
Aqoxy1G01313 Aquilegia oxysepala HOM05D003877 ORTHO05D004647 1.0e-185 653.7 433 70.9
MSTRG.8927 Avicennia marina HOM05D003877 ORTHO05D004647 1.0e-185 653.7 434 71.4
PGSC0003DMG400030038 Solanum tuberosum HOM05D003877 ORTHO05D004647 1.8e-185 652.9 421 73.2
CANSAT56G2949 Cannabis sativa HOM05D003877 ORTHO05D004647 3.9e-185 651.7 437 69.6
arahy.Tifrunner.gnm1.ann1.EJG72V Arachis hypogaea HOM05D003877 ORTHO05D004647 5.1e-185 651.4 431 71.0
Aqoxy2G01450 Aquilegia oxysepala HOM05D003877 ORTHO05D004647 8.7e-185 650.6 437 70.9
Nitab4.5_0000058g0130 Nicotiana tabacum HOM05D003877 ORTHO05D004647 8.7e-185 650.6 456 69.3
Nitab4.5_0005049g0030 Nicotiana tabacum HOM05D003877 ORTHO05D004647 1.1e-184 650.2 456 69.5
Sabra10G0141800 Salix brachista HOM05D003877 ORTHO05D004647 1.5e-184 649.8 467 67.5
Cpa.g.sc19.135 Carica papaya HOM05D003877 ORTHO05D004647 1.9e-184 649.4 409 72.6
Lsat_1_v5_gn_9_123441 Lactuca sativa HOM05D003877 ORTHO05D004647 1.9e-184 649.4 435 69.0
Duzib106G1591 Durio zibethinus HOM05D003877 ORTHO05D004647 3.3e-184 648.7 407 73.7
Peaxi162Scf00284g00528 Petunia axillaris HOM05D003877 ORTHO05D004647 9.6e-184 647.1 400 75.0
Lalb_Chr23g0277091 Lupinus albus HOM05D003877 ORTHO05D004647 1.3e-183 646.7 421 73.2
Solyc06g050990.3 Solanum lycopersicum HOM05D003877 ORTHO05D004647 1.6e-183 646.4 407 74.0
Thecc.10G011300 Theobroma cacao HOM05D003877 ORTHO05D004647 2.1e-183 646.0 408 73.8
Manes.07G134500 Manihot esculenta HOM05D003877 ORTHO05D004647 6.2e-183 644.4 414 74.4
Dinv21772 Davidia involucrata HOM05D003877 ORTHO05D004647 1.4e-182 643.3 363 83.2
Nitab4.5_0000789g0120 Nicotiana tabacum HOM05D003877 ORTHO05D004647 4.0e-182 641.7 403 75.9
Oeu056656.1 Olea europaea HOM05D003877 ORTHO05D004647 2.0e-181 639.4 434 70.7
Sopen06g016790 Solanum pennellii HOM05D003877 ORTHO05D004647 3.4e-181 638.6 407 73.2
Eucgr.G03086 Eucalyptus grandis HOM05D003877 ORTHO05D004647 1.7e-180 636.3 418 71.5
Sabra08G0053900 Salix brachista HOM05D003877 ORTHO05D004647 2.9e-180 635.6 405 73.3
THA.LOC104810121 Tarenaya hassleriana HOM05D003877 ORTHO05D004647 1.4e-179 633.3 425 69.2
HanXRQChr08g0221971 Helianthus annuus HOM05D003877 ORTHO05D004647 5.5e-179 631.3 435 68.0
Hund13891 Selenicereus undatus HOM05D003877 ORTHO05D004647 9.3e-179 630.6 434 69.6
SGA_v2.0_scaffold2G01375 Striga asiatica HOM05D003877 ORTHO05D004647 1.2e-178 630.2 415 72.5
Gohir.D04G070400 Gossypium hirsutum HOM05D003877 ORTHO05D004647 2.3e-177 625.9 407 71.3
Migut.F00639 Erythranthe guttata HOM05D003877 ORTHO05D004647 3.0e-177 625.5 429 69.7
Carub.0001s0925 Capsella rubella HOM05D003877 ORTHO05D004647 6.7e-177 624.4 418 68.4
AT1G09870 Arabidopsis thaliana HOM05D003877 ORTHO05D004647 2.5e-176 622.5 418 68.2
THA.LOC104824338 Tarenaya hassleriana HOM05D003877 ORTHO05D004647 2.5e-176 622.5 405 70.4
AL1G20470 Arabidopsis lyrata HOM05D003877 ORTHO05D004647 3.3e-176 622.1 418 68.4
AUR62022935 Chenopodium quinoa HOM05D003877 ORTHO05D004647 7.4e-176 620.9 434 68.9
ECA233G0637 Erigeron canadensis HOM05D003877 ORTHO05D004647 9.6e-176 620.5 401 71.6
Sed0008918 Sechium edule HOM05D003877 ORTHO05D004647 2.4e-174 615.9 424 68.6
Sc11g0005270 Simmondsia chinensis HOM05D003877 ORTHO05D004647 9.0e-174 614.0 403 71.5
EL10Ac2g04887 Beta vulgaris HOM05D003877 ORTHO05D004647 1.2e-173 613.6 419 69.9
Sp1g08500 Schrenkiella parvula HOM05D003877 ORTHO05D004647 3.4e-173 612.1 417 67.9
PSO801G0566 Papaver somniferum HOM05D003877 ORTHO05D004647 5.8e-173 611.3 412 68.7
Thhalv10007485m.g Eutrema salsugineum HOM05D003877 ORTHO05D004647 1.0e-172 610.5 418 67.0
SGA_v2.0_scaffold60G20966 Striga asiatica HOM05D003877 ORTHO05D004647 1.0e-172 610.5 459 65.1
AUR62012296 Chenopodium quinoa HOM05D003877 ORTHO05D004647 1.3e-172 610.1 434 68.2
CARHR009900 Cardamine hirsuta HOM05D003877 ORTHO05D004647 1.7e-172 609.8 414 68.6
SGA_v2.0_scaffold85G26692 Striga asiatica HOM05D003877 ORTHO05D004647 1.6e-170 603.2 428 68.5
Hund15887 Selenicereus undatus HOM05D003877 ORTHO05D004647 7.9e-170 600.9 434 66.1
BraA06t23872Z Brassica rapa HOM05D003877 ORTHO05D004647 3.0e-169 599.0 417 66.7
Thhalv10002208m.g Eutrema salsugineum HOM05D003877 ORTHO05D004647 3.0e-169 599.0 416 65.9
CDE04G1002 Ceratophyllum demersum HOM05D003877 ORTHO05D004647 1.5e-168 596.7 453 64.2
Os03g0818100 Oryza sativa ssp. japonica HOM05D003877 ORTHO05D004647 1.9e-168 596.3 447 63.3
Aa31LG1G5020 Aethionema arabicum HOM05D003877 ORTHO05D004647 9.7e-168 594.0 425 64.9
CsaV3_5G010390 Cucumis sativus L. HOM05D003877 ORTHO05D004647 1.3e-167 593.6 411 68.9
Gohir.A05G331800 Gossypium hirsutum HOM05D003877 ORTHO05D004647 1.6e-167 593.2 407 68.8
BraA09t41875Z Brassica rapa HOM05D003877 ORTHO05D004647 3.7e-167 592.0 417 65.9
BcaC07g41857 Brassica carinata HOM05D003877 ORTHO05D004647 4.8e-167 591.7 403 68.0
C08p49240 Brassica napus HOM05D003877 ORTHO05D004647 4.8e-167 591.7 403 68.0
BolC8t52459H Brassica oleracea HOM05D003877 ORTHO05D004647 4.8e-167 591.7 403 68.0
PGSC0003DMG400027120 Solanum tuberosum HOM05D003877 ORTHO05D004647 1.1e-166 590.5 364 76.6
A06p06580 Brassica napus HOM05D003877 ORTHO05D004647 1.4e-166 590.1 417 65.9
BolC5t29551H Brassica oleracea HOM05D003877 ORTHO05D004647 1.8e-166 589.7 417 65.7
MELO3C018375.2 Cucumis melo HOM05D003877 ORTHO05D004647 1.8e-166 589.7 442 66.3
A09p65300 Brassica napus HOM05D003877 ORTHO05D004647 3.1e-166 589.0 417 65.7
C05p07990 Brassica napus HOM05D003877 ORTHO05D004647 9.0e-166 587.4 417 65.5
Prupe.6G130900 Prunus persica HOM05D003877 ORTHO05D004647 3.4e-165 585.5 428 67.3
ClCG07G004500 Citrullus lanatus HOM05D003877 ORTHO05D004647 1.0e-164 583.9 427 64.4
ATR0068G102 Amborella trichopoda HOM05D003877 ORTHO05D004647 2.2e-164 582.8 444 62.4
Psat5g130920 Pisum sativum HOM05D003877 ORTHO05D004647 2.5e-163 579.3 426 66.7
PSO339G0345 Papaver somniferum HOM05D003877 ORTHO05D004647 3.2e-163 578.9 411 66.2
BcaC05g24837 Brassica carinata HOM05D003877 ORTHO05D004647 4.2e-163 578.6 403 66.0
Ah.10g036260 Amaranthus hybridus HOM05D003877 ORTHO05D004647 7.2e-163 577.8 457 61.9
PSO349G0168 Papaver somniferum HOM05D003877 ORTHO05D004647 7.2e-163 577.8 428 64.7
SalBow3G1521 Salvia bowleyana HOM05D003877 ORTHO05D004647 1.2e-162 577.0 592 52.9
Zm00001eb062330 Zea mays HOM05D003877 ORTHO05D004647 2.0e-160 569.7 437 63.8
CSS0003433 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 4.5e-157 558.5 378 74.1
Sed0009338 Sechium edule HOM05D003877 ORTHO05D004647 1.4e-155 553.5 409 64.5
Atru.chr12.96 Acer truncatum HOM05D003877 ORTHO05D004647 7.9e-154 547.7 407 65.8
Lsat_1_v5_gn_9_60880 Lactuca sativa HOM05D003877 ORTHO05D004647 9.7e-152 540.8 378 67.2
MELO3C034227.2 Cucumis melo HOM05D003877 ORTHO05D004647 2.8e-151 539.3 441 61.2
ATR0681G014 Amborella trichopoda HOM05D003877 ORTHO05D004647 2.1e-146 523.1 378 67.7
CsaV3_5G010430 Cucumis sativus L. HOM05D003877 ORTHO05D004647 2.3e-145 519.6 425 61.4
unitig_16.g32857 Utricularia gibba HOM05D003877 ORTHO05D004647 6.1e-138 495.0 455 53.6
CDE06G2086 Ceratophyllum demersum HOM05D003877 ORTHO05D004647 1.0e-132 477.6 438 55.9
CsaV3_5G010400 Cucumis sativus L. HOM05D003877 ORTHO05D004647 1.9e-131 473.4 408 57.6
Mapoly0029s0098 Marchantia polymorpha HOM05D003877 ORTHO05D004647 1.2e-125 454.1 450 49.3
Pp3c24_6790 Physcomitrium patens HOM05D003877 ORTHO05D004647 2.7e-125 453.0 426 51.9
Solyc05g052480.4 Solanum lycopersicum HOM05D003877 ORTHO05D004647 7.2e-123 444.9 275 76.7
Pp3c8_15050 Physcomitrium patens HOM05D003877 ORTHO05D004647 2.2e-119 433.3 404 51.7
SMO271G0017 Selaginella moellendorffii HOM05D003877 ORTHO05D004647 7.3e-115 418.3 396 50.8
HPP92_019712 Vanilla planifolia HOM05D003877 ORTHO05D004647 8.0e-114 414.8 310 65.2
AagrBONN_evm.TU.Sc2ySwM_344.2788 Anthoceros agrestis HOM05D003877 ORTHO05D004647 4.1e-102 375.9 455 43.7
unitig_8.g4098 Utricularia gibba HOM05D003877 ORTHO05D004647 2.8e-90 336.7 320 52.2
SalBow3G0419 Salvia bowleyana HOM05D003877 ORTHO05D004647 4.0e-89 332.8 219 74.9
SalBow3G3178 Salvia bowleyana HOM05D003877 ORTHO05D004647 9.6e-83 311.6 215 68.4
CsaV3_2G012250 Cucumis sativus L. HOM05D003877 ORTHO05D004647 1.7e-71 274.2 221 62.4
SEGI_29662 Sequoiadendron giganteum HOM05D003877 ORTHO05D004647 1.1e-46 191.8 159 57.9
SGA_v2.0_scaffold85G26702 Striga asiatica HOM05D003877 ORTHO05D004647 2.5e-43 180.6 112 75.9
Manes.09G077219 Manihot esculenta HOM05D003877 ORTHO05D004647 6.9e-41 172.6 101 81.2
TPR.G10202 Trifolium pratense HOM05D003877 ORTHO05D004647 5.0e-39 166.4 106 71.7
CBR_g38028 Chara braunii HOM05D003877 ORTHO05D004647 9.7e-35 152.1 209 37.8
Lsat_1_v5_gn_5_175980 Lactuca sativa HOM05D003877 ORTHO05D004647 9.1e-33 145.6 113 61.1
Manes.18G042850 Manihot esculenta HOM05D003877 ORTHO05D004647 9.1e-33 145.6 112 67.9
TAR626G1532 Trochodendron aralioides HOM05D003877 ORTHO05D004647 1.2e-32 145.2 149 52.3
Manes.06G044901 Manihot esculenta HOM05D003877 ORTHO05D004647 1.5e-32 144.8 112 67.9
SEGI_27537 Sequoiadendron giganteum HOM05D003877 ORTHO05D004647 1.5e-27 128.3 81 71.6
TPR.G5082 Trifolium pratense HOM05D003877 ORTHO05D004647 7.5e-27 125.9 83 69.9
Cre13.g568600 Chlamydomonas reinhardtii HOM05D003877 ORTHO05D004647 9.7e-27 125.6 394 28.2
CsaV3_2G012240 Cucumis sativus L. HOM05D003877 ORTHO05D004647 2.8e-26 124.0 86 65.1
unitig_8.g4097 Utricularia gibba HOM05D003877 ORTHO05D004647 2.4e-25 120.9 99 55.6
CSS0015783 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 1.5e-22 111.7 112 59.8
Nn5g28638 Nelumbo nucifera HOM05D003877 ORTHO05D004647 1.2e-21 108.6 71 69.0
Nn7g36267 Nelumbo nucifera HOM05D003877 ORTHO05D004647 2.2e-18 97.8 62 71.0
Carub.0003s0920 Capsella rubella HOM05D000468 ORTHO05D114682 4.5e-16 90.1 67 68.7
Manes.15G188901 Manihot esculenta HOM05D003877 ORTHO05D004647 4.2e-14 83.6 48 81.2
MELO3C018376.2 Cucumis melo HOM05D003877 ORTHO05D004647 2.2e-10 71.2 45 71.1
ATR0681G284 Amborella trichopoda HOM05D003877 ORTHO05D038325 7.0e-09 66.2 71 42.3
MELO3C033083.2 Cucumis melo HOM05D003877 ORTHO05D034944 6.6e-07 59.7 38 71.1
SEGI_18884 Sequoiadendron giganteum HOM05D003877 ORTHO05D038325 8.6e-07 59.3 53 43.4
PSO017G6761 Papaver somniferum HOM05D000240 ORTHO05D004647 4.3e-06 57.0 59 39.0
Lsat_1_v5_gn_6_23680 Lactuca sativa HOM05D001176 ORTHO05D014361 5.6e-06 56.6 53 54.7
PSO063G3403 Papaver somniferum HOM05D000240 ORTHO05D002721 5.6e-06 56.6 59 40.7


User provided reference genes

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