Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0004322 Camellia sinensis var. sinensis HOM05D002283 ORTHO05D028407 1.2e-83 313.2 155 100.0
CSS0033382 Camellia sinensis var. sinensis HOM05D002283 ORTHO05D028407 1.2e-75 286.6 165 89.7
CSS0023672 Camellia sinensis var. sinensis HOM05D002283 ORTHO05D005725 2.3e-47 192.6 180 62.8
CSS0022181 Camellia sinensis var. sinensis HOM05D002283 ORTHO05D005725 5.1e-47 191.4 189 60.8
Dinv04656 Davidia involucrata HOM05D002283 ORTHO05D005725 6.9e-44 181.0 187 57.8
Hma1.2p1_1289F.1_g273370 Hydrangea macrophylla HOM05D002283 ORTHO05D005725 2.6e-43 179.1 189 57.1
Peaxi162Scf00169g00012 Petunia axillaris HOM05D002283 ORTHO05D005725 4.4e-43 178.3 174 56.3
Dinv28782 Davidia involucrata HOM05D002283 ORTHO05D005725 5.8e-43 177.9 187 57.2
PGSC0003DMG400020294 Solanum tuberosum HOM05D002283 ORTHO05D005725 1.3e-42 176.8 189 54.5
Sopen09g013030 Solanum pennellii HOM05D002283 ORTHO05D005725 6.4e-42 174.5 189 54.0
Solyc09g020140.3 Solanum lycopersicum HOM05D002283 ORTHO05D005725 1.4e-41 173.3 189 53.4
CiPaw.13G058300 Carya illinoinensis HOM05D002283 ORTHO05D005725 5.4e-41 171.4 189 53.4
ClCG09G007880 Citrullus lanatus HOM05D002283 ORTHO05D005725 5.4e-41 171.4 189 55.0
Migut.D00763 Erythranthe guttata HOM05D002283 ORTHO05D005725 7.1e-41 171.0 187 52.9
Nitab4.5_0003502g0130 Nicotiana tabacum HOM05D002283 ORTHO05D005725 7.1e-41 171.0 189 53.4
Eucgr.H00684 Eucalyptus grandis HOM05D002283 ORTHO05D005725 9.3e-41 170.6 188 54.3
Oeu003683.1 Olea europaea HOM05D002283 ORTHO05D005725 9.3e-41 170.6 187 52.9
Actinidia34523 Actinidia chinensis HOM05D002283 ORTHO05D005725 1.2e-40 170.2 189 55.0
TWI53G1627 Tripterygium wilfordii HOM05D002283 ORTHO05D005725 1.6e-40 169.9 189 54.0
Duzib138G0576 Durio zibethinus HOM05D002283 ORTHO05D005725 2.1e-40 169.5 189 51.9
Sed0021942 Sechium edule HOM05D002283 ORTHO05D005725 2.1e-40 169.5 189 53.4
Nitab4.5_0013369g0010 Nicotiana tabacum HOM05D002283 ORTHO05D005725 2.7e-40 169.1 188 52.7
Potri.014G174200 Populus trichocarpa HOM05D002283 ORTHO05D005725 2.7e-40 169.1 195 52.8
Ciclev10032421m.g Citrus clementina HOM05D002283 ORTHO05D005725 3.5e-40 168.7 189 53.4
MELO3C015718.2 Cucumis melo HOM05D002283 ORTHO05D005725 3.5e-40 168.7 188 53.2
CsaV3_7G027190 Cucumis sativus L. HOM05D002283 ORTHO05D005725 3.5e-40 168.7 188 53.2
CSS0013505 Camellia sinensis var. sinensis HOM05D002283 ORTHO05D005725 4.6e-40 168.3 190 55.3
Cc04_g10330 Coffea canephora HOM05D002283 ORTHO05D005725 6.0e-40 167.9 189 52.9
CSS0034812 Camellia sinensis var. sinensis HOM05D002283 ORTHO05D005725 7.8e-40 167.5 177 59.3
Thecc.01G205600 Theobroma cacao HOM05D002283 ORTHO05D005725 7.8e-40 167.5 189 51.9
TAR636G0268 Trochodendron aralioides HOM05D002283 ORTHO05D005725 1.7e-39 166.4 188 52.1
Nn8g38671 Nelumbo nucifera HOM05D002283 ORTHO05D005725 3.0e-39 165.6 188 52.1
DCAR_018604 Daucus carota HOM05D002283 ORTHO05D005725 3.9e-39 165.2 190 52.1
Duzib133G0945 Durio zibethinus HOM05D002283 ORTHO05D005725 3.9e-39 165.2 189 51.9
Peaxi162Scf00995g00325 Petunia axillaris HOM05D002283 ORTHO05D005725 3.9e-39 165.2 189 52.4
QL06p016631 Quercus lobata HOM05D002283 ORTHO05D005725 3.9e-39 165.2 188 52.7
SGA_v2.0_scaffold8G04485 Striga asiatica HOM05D002283 ORTHO05D005725 3.9e-39 165.2 188 52.7
Atru.chr6.474 Acer truncatum HOM05D002283 ORTHO05D005725 5.1e-39 164.9 188 52.1
Cpa.g.sc8.26 Carica papaya HOM05D002283 ORTHO05D005725 6.6e-39 164.5 189 50.8
Sabra14G0133500 Salix brachista HOM05D002283 ORTHO05D005725 6.6e-39 164.5 187 52.4
COL.COLO4_29923 Corchorus olitorius HOM05D002283 ORTHO05D005725 8.7e-39 164.1 189 51.3
ECA247G0029 Erigeron canadensis HOM05D002283 ORTHO05D005725 1.1e-38 163.7 194 51.0
unitig_0.g794 Utricularia gibba HOM05D002283 ORTHO05D005725 1.1e-38 163.7 195 51.3
Gohir.A07G089100 Gossypium hirsutum HOM05D002283 ORTHO05D005725 1.9e-38 162.9 187 50.8
Gohir.D07G094000 Gossypium hirsutum HOM05D002283 ORTHO05D005725 1.9e-38 162.9 187 50.8
Gorai.001G100800 Gossypium raimondii HOM05D002283 ORTHO05D005725 1.9e-38 162.9 187 50.8
Lsat_1_v5_gn_9_17160 Lactuca sativa HOM05D002283 ORTHO05D005725 1.9e-38 162.9 194 50.5
Manes.12G057506 Manihot esculenta HOM05D002283 ORTHO05D005725 1.9e-38 162.9 188 52.1
Manes.12G057903 Manihot esculenta HOM05D002283 ORTHO05D005725 1.9e-38 162.9 188 52.1
CANSAT35G1200 Cannabis sativa HOM05D002283 ORTHO05D005725 2.5e-38 162.5 189 50.3
PGR119G0195 Punica granatum HOM05D002283 ORTHO05D005725 2.5e-38 162.5 188 51.6
QL11p010737 Quercus lobata HOM05D002283 ORTHO05D005725 2.5e-38 162.5 188 52.1
GSVIVG01001907001 Vitis vinifera HOM05D002283 ORTHO05D005725 2.5e-38 162.5 188 51.6
arahy.Tifrunner.gnm1.ann1.577AC6 Arachis hypogaea HOM05D002283 ORTHO05D005725 3.3e-38 162.2 189 52.4
MSTRG.18513 Avicennia marina HOM05D002283 ORTHO05D005725 4.3e-38 161.8 187 51.9
HanXRQChr08g0231361 Helianthus annuus HOM05D002283 ORTHO05D005725 1.3e-37 160.2 182 52.7
Aqoxy3G04331 Aquilegia oxysepala HOM05D002283 ORTHO05D005725 2.1e-37 159.5 191 52.4
Glyma.08G288700 Glycine max HOM05D002283 ORTHO05D005725 2.1e-37 159.5 190 51.1
MBI19_g03264_MAGBIO Magnolia biondii HOM05D002283 ORTHO05D005725 2.8e-37 159.1 189 50.3
Sc26g0001390 Simmondsia chinensis HOM05D002283 ORTHO05D005725 3.6e-37 158.7 188 49.5
Cfa010632 Carpinus fangiana HOM05D002283 ORTHO05D005725 4.8e-37 158.3 188 51.1
MD09G1159000 Malus domestica HOM05D002283 ORTHO05D005725 4.8e-37 158.3 197 50.3
Manes.12G058106 Manihot esculenta HOM05D002283 ORTHO05D005725 4.8e-37 158.3 188 51.6
Manes.12G058907 Manihot esculenta HOM05D002283 ORTHO05D005725 4.8e-37 158.3 188 51.6
VMungo0540G2305 Vigna mungo HOM05D002283 ORTHO05D005725 6.2e-37 157.9 190 50.5
CDE04G1029 Ceratophyllum demersum HOM05D002283 ORTHO05D005725 8.1e-37 157.5 187 49.7
PSO782G5218 Papaver somniferum HOM05D002283 ORTHO05D005725 1.1e-36 157.1 189 50.3
Prupe.3G166900 Prunus persica HOM05D002283 ORTHO05D005725 1.4e-36 156.8 189 49.2
Lalb_Chr01g0020781 Lupinus albus HOM05D002283 ORTHO05D005725 2.4e-36 156.0 189 49.7
Nitab4.5_0001015g0010 Nicotiana tabacum HOM05D002283 ORTHO05D005725 5.3e-36 154.8 215 46.0
Phvul.006G048300 Phaseolus vulgaris HOM05D002283 ORTHO05D005725 5.3e-36 154.8 190 49.5
Lalb_Chr03g0037871 Lupinus albus HOM05D002283 ORTHO05D005725 6.9e-36 154.5 189 49.2
Os03g0714400 Oryza sativa ssp. japonica HOM05D002283 ORTHO05D005725 6.9e-36 154.5 188 49.5
ATR0753G108 Amborella trichopoda HOM05D002283 ORTHO05D005725 9.0e-36 154.1 187 48.7
PSO063G3354 Papaver somniferum HOM05D002283 ORTHO05D005725 9.0e-36 154.1 189 49.7
HPP92_006935 Vanilla planifolia HOM05D002283 ORTHO05D005725 9.0e-36 154.1 190 49.5
MD17G1145200 Malus domestica HOM05D002283 ORTHO05D005725 2.6e-35 152.5 189 50.3
arahy.Tifrunner.gnm1.ann1.37ANK5 Arachis hypogaea HOM05D002283 ORTHO05D005725 7.6e-35 151.0 190 49.5
FvH4_6g37261 Fragaria vesca HOM05D002283 ORTHO05D005725 9.9e-35 150.6 185 49.2
FAN02G0377 Fragaria x ananassa HOM05D002283 ORTHO05D005725 9.9e-35 150.6 185 49.2
FAN05G5505 Fragaria x ananassa HOM05D002283 ORTHO05D005725 9.9e-35 150.6 185 49.2
FAN14G5581 Fragaria x ananassa HOM05D005491 ORTHO05D005725 9.9e-35 150.6 185 49.2
RcHm_v2.0_Chr2g0150081 Rosa chinensis HOM05D002283 ORTHO05D005725 2.2e-34 149.4 186 48.4
Psat5g112120 Pisum sativum HOM05D002283 ORTHO05D005725 2.9e-34 149.1 190 47.4
AUR62008457 Chenopodium quinoa HOM05D002283 ORTHO05D005725 4.9e-34 148.3 187 48.7
AUR62021638 Chenopodium quinoa HOM05D002283 ORTHO05D005725 4.9e-34 148.3 187 48.7
THA.LOC104815388 Tarenaya hassleriana HOM05D002283 ORTHO05D005725 4.9e-34 148.3 188 47.9
THA.LOC104826642 Tarenaya hassleriana HOM05D002283 ORTHO05D005725 8.4e-34 147.5 192 48.4
EL10Ac6g13986 Beta vulgaris HOM05D002283 ORTHO05D005725 1.9e-33 146.4 187 48.1
RcHm_v2.0_Chr3g0481161 Rosa chinensis HOM05D002283 ORTHO05D005725 1.9e-33 146.4 186 48.4
Medtr3g080040 Medicago truncatula HOM05D002283 ORTHO05D005725 2.4e-33 146.0 190 46.8
Gorai.007G161900 Gossypium raimondii HOM05D002283 ORTHO05D005725 3.2e-33 145.6 194 45.9
Zm00001eb112910 Zea mays HOM05D002283 ORTHO05D005725 7.1e-33 144.4 169 47.9
Lj6g0014346 Lotus japonicus HOM05D002283 ORTHO05D005725 1.2e-32 143.7 189 47.6
FAN14G3055 Fragaria x ananassa HOM05D002283 ORTHO05D005725 3.5e-32 142.1 176 49.4
SEGI_09812 Sequoiadendron giganteum HOM05D002283 ORTHO05D005725 4.6e-32 141.7 189 43.4
Zm00001eb216170 Zea mays HOM05D002283 ORTHO05D005725 6.0e-32 141.4 188 45.7
Aa31sc565G10 Aethionema arabicum HOM05D002283 ORTHO05D005725 2.3e-31 139.4 189 46.0
Ca_16270_v3 Cicer arietinum L. HOM05D002283 ORTHO05D005725 2.3e-31 139.4 190 46.8
Os03g0337700 Oryza sativa ssp. japonica HOM05D002283 ORTHO05D005725 2.3e-31 139.4 188 46.3
Ah.03g140230 Amaranthus hybridus HOM05D002283 ORTHO05D005725 5.1e-31 138.3 187 46.0
Ah.12g064970 Amaranthus hybridus HOM05D002283 ORTHO05D005725 5.1e-31 138.3 189 47.1
HanXRQChr05g0159331 Helianthus annuus HOM05D002283 ORTHO05D005725 5.1e-31 138.3 81 82.7
Lj2C1109G24 Lonicera japonica HOM05D002283 ORTHO05D005725 6.7e-31 137.9 82 84.1
SHI10211 Sapria himalayana HOM05D002283 ORTHO05D005725 5.6e-30 134.8 177 48.0
Hund09474 Selenicereus undatus HOM05D002283 ORTHO05D005725 5.6e-30 134.8 188 44.7
Aa31sc134G10 Aethionema arabicum HOM05D002283 ORTHO05D005725 9.6e-30 134.0 188 44.7
Mapoly0043s0065 Marchantia polymorpha HOM05D002283 ORTHO05D005725 9.6e-30 134.0 186 40.9
Thhalv10003026m.g Eutrema salsugineum HOM05D002283 ORTHO05D005725 2.1e-29 132.9 188 45.2
BcaB08g34457 Brassica carinata HOM05D002283 ORTHO05D005725 3.7e-29 132.1 188 44.7
Carub.0007s3003 Capsella rubella HOM05D002283 ORTHO05D005725 3.7e-29 132.1 189 43.9
AT4G12790 Arabidopsis thaliana HOM05D002283 ORTHO05D005725 4.8e-29 131.7 196 42.3
BcaB03g16149 Brassica carinata HOM05D002283 ORTHO05D005725 6.2e-29 131.3 195 41.0
CARHR218080 Cardamine hirsuta HOM05D002283 ORTHO05D005725 6.2e-29 131.3 187 43.3
BcaC02g09468 Brassica carinata HOM05D002283 ORTHO05D005725 8.1e-29 131.0 195 41.0
AL9U11810 Arabidopsis lyrata HOM05D002283 ORTHO05D005725 1.4e-28 130.2 189 42.3
C04p43130 Brassica napus HOM05D002283 ORTHO05D005725 1.8e-28 129.8 198 40.4
BolC4t25890H Brassica oleracea HOM05D002283 ORTHO05D005725 1.8e-28 129.8 198 40.4
Sp7g09370 Schrenkiella parvula HOM05D002283 ORTHO05D005725 4.0e-28 128.6 188 41.0
AagrBONN_evm.TU.Sc2ySwM_344.4067 Anthoceros agrestis HOM05D002283 ORTHO05D005725 5.3e-28 128.3 188 38.8
CAN.G2034.3 Capsicum annuum HOM05D002283 ORTHO05D005725 5.3e-28 128.3 192 45.3
A04p09170 Brassica napus HOM05D002283 ORTHO05D005725 6.9e-28 127.9 197 39.6
BraA04t16610Z Brassica rapa HOM05D002283 ORTHO05D005725 6.9e-28 127.9 197 39.6
BolC3t17747H Brassica oleracea HOM05D002283 ORTHO05D005725 2.6e-27 125.9 188 43.6
BcaC01g03221 Brassica carinata HOM05D002283 ORTHO05D005725 3.4e-27 125.6 188 43.6
C03p54610 Brassica napus HOM05D002283 ORTHO05D005725 3.4e-27 125.6 188 43.6
vmacro14676 Vaccinium macrocarpon HOM05D002283 ORTHO05D005725 4.5e-27 125.2 203 44.3
BraA03t13551Z Brassica rapa HOM05D002283 ORTHO05D005725 5.8e-27 124.8 188 42.0
A03p44220 Brassica napus HOM05D002283 ORTHO05D005725 1.0e-26 124.0 188 42.6
SMO200G0002 Selaginella moellendorffii HOM05D002283 ORTHO05D005725 6.5e-26 121.3 189 38.6
Pp3c19_7220 Physcomitrium patens HOM05D002283 ORTHO05D005725 1.1e-25 120.6 189 37.6
CBR_g16045 Chara braunii HOM05D002283 ORTHO05D005725 1.6e-24 116.7 186 36.6
CDE03G0519 Ceratophyllum demersum HOM05D002283 ORTHO05D005725 2.8e-21 105.9 164 41.5
FvH4_6g36140 Fragaria vesca HOM05D002283 ORTHO05D028407 3.1e-20 102.4 62 80.6
Cre04.g212650 Chlamydomonas reinhardtii HOM05D002283 ORTHO05D005725 2.9e-18 95.9 190 33.7
Gohir.A11G144600 Gossypium hirsutum HOM05D002283 ORTHO05D005725 1.4e-17 93.6 157 39.5
ECA236G3045 Erigeron canadensis HOM05D002283 ORTHO05D035164 2.1e-16 89.7 77 61.0
SMO200G0096 Selaginella moellendorffii HOM05D002283 ORTHO05D005725 2.3e-15 86.3 177 35.6
FAN09G1743 Fragaria x ananassa HOM05D005491 ORTHO05D006973 3.0e-15 85.9 185 34.1
Peaxi162Scf00169g00008 Petunia axillaris HOM05D002283 ORTHO05D005725 8.7e-15 84.3 156 39.1
CARHR085170 Cardamine hirsuta HOM05D002283 ORTHO05D028407 2.5e-14 82.8 86 54.7
MCO01G727 Micromonas commoda HOM05D002283 ORTHO05D005725 9.7e-14 80.9 179 30.7
AUR62008627 Chenopodium quinoa HOM05D002283 ORTHO05D138025 2.2e-13 79.7 102 49.0
PGR083G1673 Punica granatum HOM05D002283 ORTHO05D005725 1.8e-12 76.6 138 39.9
Haze_27366 Corylus avellana HOM05D002283 ORTHO05D005725 6.9e-12 74.7 186 30.6
Haze_03574 Corylus avellana HOM05D002283 ORTHO05D005725 9.0e-12 74.3 163 36.2
PRCOL_00002035 Prasinoderma coloniale HOM05D002283 ORTHO05D005725 7.7e-11 71.2 191 26.7
Gohir.D11G151633 Gossypium hirsutum HOM05D002283 ORTHO05D005725 5.0e-10 68.6 150 38.0
Thhalv10025507m.g Eutrema salsugineum HOM05D002283 ORTHO05D005725 9.4e-09 64.3 139 32.4
Peaxi162Scf02641g00002 Petunia axillaris HOM05D002283 ORTHO05D005725 1.6e-08 63.5 36 77.8
Nitab4.5_0000231g0320 Nicotiana tabacum HOM05D002283 ORTHO05D005725 3.0e-07 59.3 140 37.1
Ca_00627_v3 Cicer arietinum L. HOM05D000073 ORTHO05D000033 3.3e-06 55.8 139 33.1


User provided reference genes

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