Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0004303 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 2.5e-276 954.9 519 100.0
CSS0034769 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 1.2e-273 946.0 519 95.4
CSS0028284 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 3.6e-222 775.0 423 93.6
Rhsim08G0000400 Rhododendron simsii HOM05D005286 ORTHO05D006348 1.5e-204 716.5 466 77.7
Actinidia16523 Actinidia chinensis HOM05D005286 ORTHO05D006348 4.4e-204 714.9 471 78.1
vmacro18685 Vaccinium macrocarpon HOM05D005286 ORTHO05D006348 1.1e-202 710.3 469 77.2
Thecc.01G137300 Theobroma cacao HOM05D005286 ORTHO05D006348 3.6e-198 695.3 476 74.8
CSS0025452 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 2.3e-197 692.6 474 77.6
Gohir.A12G085400 Gossypium hirsutum HOM05D005286 ORTHO05D006348 2.4e-194 682.6 474 74.1
Ciclev10000962m.g Citrus clementina HOM05D005286 ORTHO05D006348 3.5e-193 678.7 469 74.6
Gohir.D12G083400 Gossypium hirsutum HOM05D005286 ORTHO05D006348 4.6e-193 678.3 476 73.7
CiPaw.03G118000 Carya illinoinensis HOM05D005286 ORTHO05D006348 7.8e-193 677.6 458 74.9
Duzib147G1331 Durio zibethinus HOM05D005286 ORTHO05D006348 3.9e-192 675.2 495 70.7
Lj4A421T8 Lonicera japonica HOM05D005286 ORTHO05D006348 1.5e-191 673.3 462 74.7
GSVIVG01022340001 Vitis vinifera HOM05D005286 ORTHO05D006348 4.3e-191 671.8 470 74.5
TAR625G0087 Trochodendron aralioides HOM05D005286 ORTHO05D006348 6.2e-190 667.9 472 73.1
Hma1.2p1_3117F.1_g332810 Hydrangea macrophylla HOM05D005286 ORTHO05D006348 8.1e-190 667.5 491 71.9
Gorai.008G094500 Gossypium raimondii HOM05D005286 ORTHO05D006348 1.4e-189 666.8 490 71.4
QL10p041275 Quercus lobata HOM05D005286 ORTHO05D006348 1.4e-189 666.8 460 74.8
Duzib187G0999 Durio zibethinus HOM05D005286 ORTHO05D006348 1.8e-189 666.4 473 72.5
Atru.chr4.988 Acer truncatum HOM05D005286 ORTHO05D006348 2.2e-187 659.4 478 71.3
MSTRG.23499 Avicennia marina HOM05D005286 ORTHO05D006348 2.2e-187 659.4 469 73.6
Prupe.4G274700 Prunus persica HOM05D005286 ORTHO05D006348 6.4e-187 657.9 460 72.8
Cfa021278 Carpinus fangiana HOM05D005286 ORTHO05D006348 4.2e-186 655.2 471 73.7
ECA248G0233 Erigeron canadensis HOM05D005286 ORTHO05D006348 1.6e-185 653.3 468 71.6
Peaxi162Scf00151g00811 Petunia axillaris HOM05D005286 ORTHO05D006348 7.8e-185 651.0 498 67.9
Solyc12g088020.1 Solanum lycopersicum HOM05D005286 ORTHO05D006348 1.7e-184 649.8 474 69.0
FvH4_1g24860 Fragaria vesca HOM05D005286 ORTHO05D006348 5.1e-184 648.3 467 70.0
FAN19G2916 Fragaria x ananassa HOM05D005286 ORTHO05D006348 5.1e-184 648.3 467 70.0
MD15G1135000 Malus domestica HOM05D005286 ORTHO05D006348 5.1e-184 648.3 471 72.4
Sopen12g030050 Solanum pennellii HOM05D005286 ORTHO05D006348 5.1e-184 648.3 474 69.2
PGSC0003DMG400045338 Solanum tuberosum HOM05D005286 ORTHO05D006348 5.1e-184 648.3 474 69.8
Migut.H00797 Erythranthe guttata HOM05D005286 ORTHO05D006348 1.1e-183 647.1 474 70.7
Manes.12G159000 Manihot esculenta HOM05D005286 ORTHO05D006348 1.1e-183 647.1 470 71.7
SGA_v2.0_scaffold189G40378 Striga asiatica HOM05D005286 ORTHO05D006348 1.5e-183 646.7 456 73.9
HanXRQChr01g0017141 Helianthus annuus HOM05D005286 ORTHO05D006348 1.9e-183 646.4 472 71.0
ClCG04G002290 Citrullus lanatus HOM05D005286 ORTHO05D006348 5.6e-183 644.8 465 71.4
Lj1g0003788 Lotus japonicus HOM05D003519 ORTHO05D004443 5.6e-183 644.8 478 70.3
RcHm_v2.0_Chr2g0122521 Rosa chinensis HOM05D005286 ORTHO05D006348 7.3e-183 644.4 475 69.9
Oeu037874.1 Olea europaea HOM05D005286 ORTHO05D006348 9.6e-183 644.0 471 70.7
Lsat_1_v5_gn_1_78000 Lactuca sativa HOM05D005286 ORTHO05D006348 1.3e-182 643.7 458 71.8
Aqoxy5G02419 Aquilegia oxysepala HOM05D005286 ORTHO05D006348 1.6e-182 643.3 471 70.7
FAN23G2334 Fragaria x ananassa HOM05D005286 ORTHO05D006348 2.8e-182 642.5 476 68.9
Ca_16981_v3 Cicer arietinum L. HOM05D005286 ORTHO05D006348 6.2e-182 641.3 483 70.2
Potri.007G101600 Populus trichocarpa HOM05D005286 ORTHO05D006348 6.2e-182 641.3 470 71.1
TWI75G1712 Tripterygium wilfordii HOM05D005286 ORTHO05D006348 4.0e-181 638.6 474 70.3
MELO3C008897.2 Cucumis melo HOM05D005286 ORTHO05D006348 5.3e-181 638.3 445 72.1
FAN26G1990 Fragaria x ananassa HOM05D005286 ORTHO05D006348 9.0e-181 637.5 467 69.2
FAN28G1250 Fragaria x ananassa HOM05D005286 ORTHO05D006348 1.5e-180 636.7 467 68.7
Sabra07G0083800 Salix brachista HOM05D005286 ORTHO05D006348 2.0e-180 636.3 470 70.2
Nn1g08960 Nelumbo nucifera HOM05D005286 ORTHO05D006348 2.6e-180 636.0 440 72.3
Sed0025698 Sechium edule HOM05D005286 ORTHO05D006348 1.3e-179 633.6 443 73.1
CsaV3_4G030380 Cucumis sativus L. HOM05D005286 ORTHO05D006348 4.9e-179 631.7 445 71.2
Glyma.06G155750 Glycine max HOM05D005286 ORTHO05D006348 6.4e-179 631.3 468 69.2
PGR119G0364 Punica granatum HOM05D005286 ORTHO05D006348 1.4e-178 630.2 485 66.6
VMungo1309G1016 Vigna mungo HOM05D005286 ORTHO05D006348 1.9e-178 629.8 481 68.0
TPR.G33580 Trifolium pratense HOM05D005286 ORTHO05D006348 5.4e-178 628.2 456 70.8
Cc07_g21020 Coffea canephora HOM05D005286 ORTHO05D006348 2.7e-177 625.9 472 69.1
CANSAT35G0194 Cannabis sativa HOM05D005286 ORTHO05D006348 3.5e-177 625.5 463 70.2
Lalb_Chr23g0272691 Lupinus albus HOM05D005286 ORTHO05D006348 3.0e-176 622.5 472 69.5
CAN.G1104.7 Capsicum annuum HOM05D005286 ORTHO05D006348 6.6e-176 621.3 472 67.6
arahy.Tifrunner.gnm1.ann1.7K8RK5 Arachis hypogaea HOM05D005286 ORTHO05D006348 8.7e-176 620.9 480 67.3
arahy.Tifrunner.gnm1.ann1.ZN9YLD Arachis hypogaea HOM05D005286 ORTHO05D006348 1.5e-175 620.2 480 67.1
Nitab4.5_0000954g0020 Nicotiana tabacum HOM05D005286 ORTHO05D006348 2.5e-175 619.4 466 69.1
THA.LOC104819345 Tarenaya hassleriana HOM05D005286 ORTHO05D006348 2.5e-175 619.4 463 68.5
AL8G41150 Arabidopsis lyrata HOM05D005286 ORTHO05D006348 5.6e-175 618.2 470 67.0
Sc09g0002230 Simmondsia chinensis HOM05D005286 ORTHO05D006348 7.4e-175 617.8 471 67.1
BcaB02g09762 Brassica carinata HOM05D005286 ORTHO05D006348 9.6e-175 617.5 465 67.7
EL10Ac4g09623 Beta vulgaris HOM05D005286 ORTHO05D006348 5.3e-173 611.7 508 61.8
Carub.0008s2471 Capsella rubella HOM05D005286 ORTHO05D006348 5.3e-173 611.7 470 66.4
CARHR277830 Cardamine hirsuta HOM05D005286 ORTHO05D006348 5.3e-173 611.7 463 66.3
Medtr3g096675 Medicago truncatula HOM05D005286 ORTHO05D006348 2.6e-172 609.4 465 68.4
Potri.007G101700 Populus trichocarpa HOM05D005286 ORTHO05D006348 2.6e-172 609.4 468 66.9
Phvul.009G154600 Phaseolus vulgaris HOM05D005286 ORTHO05D006348 4.5e-172 608.6 471 67.9
Sp2g26980 Schrenkiella parvula HOM05D005286 ORTHO05D006348 4.5e-172 608.6 463 65.7
AT5G63910 Arabidopsis thaliana HOM05D005286 ORTHO05D006348 5.8e-172 608.2 463 66.5
Hund21799 Selenicereus undatus HOM05D005286 ORTHO05D006348 7.6e-172 607.8 480 64.2
BcaC01g02644 Brassica carinata HOM05D005286 ORTHO05D006348 1.7e-171 606.7 467 66.2
A06p30530 Brassica napus HOM05D005286 ORTHO05D006348 2.2e-171 606.3 467 65.7
BraA06t26002Z Brassica rapa HOM05D005286 ORTHO05D006348 2.2e-171 606.3 467 65.7
C03p62500 Brassica napus HOM05D005286 ORTHO05D006348 3.8e-171 605.5 466 66.1
BolC3t18507H Brassica oleracea HOM05D005286 ORTHO05D006348 3.8e-171 605.5 466 66.1
Aa31LG1G17980 Aethionema arabicum HOM05D005286 ORTHO05D006348 1.4e-170 603.6 465 66.2
Ah.06g191030 Amaranthus hybridus HOM05D005286 ORTHO05D006348 4.6e-169 598.6 474 65.0
PSO170G0528 Papaver somniferum HOM05D005286 ORTHO05D006348 7.4e-167 591.3 460 66.3
THA.LOC104818420 Tarenaya hassleriana HOM05D005286 ORTHO05D006348 7.1e-162 574.7 501 60.7
Thhalv10004131m.g Eutrema salsugineum HOM05D005286 ORTHO05D006348 9.6e-159 564.3 470 63.4
MBI06_g35210_MAGBIO Magnolia biondii HOM05D005286 ORTHO05D006348 1.1e-157 560.8 544 57.4
ATR0138G018 Amborella trichopoda HOM05D005286 ORTHO05D006348 1.8e-157 560.1 464 65.1
Nn5g28436 Nelumbo nucifera HOM05D005286 ORTHO05D006348 5.3e-157 558.5 460 65.0
AUR62006858 Chenopodium quinoa HOM05D005286 ORTHO05D006348 1.5e-156 557.0 425 65.9
Eucgr.I00123 Eucalyptus grandis HOM05D005286 ORTHO05D006348 1.5e-156 557.0 509 59.5
AUR62000514 Chenopodium quinoa HOM05D005286 ORTHO05D006348 3.4e-156 555.8 425 65.6
HPP92_011629 Vanilla planifolia HOM05D005286 ORTHO05D006348 4.6e-153 545.4 468 60.7
COL.COLO4_35813 Corchorus olitorius HOM05D005286 ORTHO05D006348 6.7e-152 541.6 474 61.6
Gohir.D12G083401 Gossypium hirsutum HOM05D005286 ORTHO05D006348 1.5e-151 540.4 372 73.7
Nitab4.5_0000432g0040 Nicotiana tabacum HOM05D005286 ORTHO05D006348 2.2e-147 526.6 466 62.4
Sabra07G0083900 Salix brachista HOM05D005286 ORTHO05D006348 1.8e-144 516.9 387 67.7
DCAR_019994 Daucus carota HOM05D005286 ORTHO05D006348 5.3e-141 505.4 471 59.4
Zm00001eb434510 Zea mays HOM05D005286 ORTHO05D006348 6.9e-141 505.0 444 60.1
Hund07236 Selenicereus undatus HOM05D005286 ORTHO05D006348 6.5e-139 498.4 392 63.0
SMO119G0327 Selaginella moellendorffii HOM05D005286 ORTHO05D006348 1.8e-125 453.8 470 53.4
Psat5g059680 Pisum sativum HOM05D005286 ORTHO05D006348 1.2e-124 451.1 332 70.5
Mapoly0032s0088 Marchantia polymorpha HOM05D005286 ORTHO05D006348 5.5e-122 442.2 447 52.8
CSS0038762 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 5.2e-120 435.6 265 96.6
Hma1.2p1_0310F.1_g121020 Hydrangea macrophylla HOM05D005286 ORTHO05D006348 1.6e-105 387.5 231 82.7
CSS0007937 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 3.0e-104 383.3 204 92.6
QL10p041264 Quercus lobata HOM05D005286 ORTHO05D006348 5.2e-104 382.5 259 74.1
Haze_10873 Corylus avellana HOM05D005286 ORTHO05D006348 1.7e-91 340.9 290 65.2
Cpa.g.sc37.7 Carica papaya HOM05D005286 ORTHO05D006348 3.9e-91 339.7 269 68.4
Dinv24561 Davidia involucrata HOM05D005286 ORTHO05D006348 1.9e-90 337.4 201 81.1
Dinv15529 Davidia involucrata HOM05D005286 ORTHO05D006348 5.6e-90 335.9 202 80.2
SEGI_22884 Sequoiadendron giganteum HOM05D005286 ORTHO05D006348 2.1e-89 334.0 238 67.6
SEGI_35897 Sequoiadendron giganteum HOM05D005286 ORTHO05D006348 2.1e-89 334.0 238 67.6
AagrBONN_evm.TU.Sc2ySwM_362.2029 Anthoceros agrestis HOM05D005286 ORTHO05D006348 7.5e-87 325.5 327 53.5
Pp3c3_10560 Physcomitrium patens HOM05D005286 ORTHO05D006348 3.6e-81 306.6 322 50.6
Dinv24565 Davidia involucrata HOM05D005286 ORTHO05D006348 4.1e-77 293.1 207 71.0
unitig_748.g8003 Utricularia gibba HOM05D005286 ORTHO05D006348 1.2e-76 291.6 240 64.2
CBR_g8546 Chara braunii HOM05D005286 ORTHO05D006348 1.2e-73 281.6 332 46.1
DCAR_000205 Daucus carota HOM05D005286 ORTHO05D006348 2.1e-73 280.8 186 74.2
unitig_748.g8002 Utricularia gibba HOM05D005286 ORTHO05D006348 1.7e-70 271.2 187 71.1
QL10p041267 Quercus lobata HOM05D005286 ORTHO05D006348 7.1e-69 265.8 211 66.8
CDE08G1426 Ceratophyllum demersum HOM05D005286 ORTHO05D006348 7.8e-68 262.3 228 60.1
Oeu039334.1 Olea europaea HOM05D005286 ORTHO05D006348 5.6e-66 256.1 178 73.0
CSS0025385 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 4.6e-60 236.5 252 56.7
Cpa.g.sc37.6 Carica papaya HOM05D005286 ORTHO05D006348 6.9e-56 222.6 157 70.7
RcHm_v2.0_Chr6g0261231 Rosa chinensis HOM05D005286 ORTHO05D006348 5.8e-55 219.5 169 65.1
CDE08G1664 Ceratophyllum demersum HOM05D005286 ORTHO05D006348 6.2e-49 199.5 163 62.6
Nitab4.5_0004530g0050 Nicotiana tabacum HOM05D005286 ORTHO05D006348 7.9e-44 182.6 142 65.5
CBR_g864 Chara braunii HOM05D005286 ORTHO05D006348 6.7e-43 179.5 418 30.4
Nitab4.5_0008592g0010 Nicotiana tabacum HOM05D005286 ORTHO05D006348 2.3e-35 154.5 119 66.4
PRCOL_00003919 Prasinoderma coloniale HOM05D005286 ORTHO05D006348 3.1e-32 144.1 482 31.1
SEGI_37681 Sequoiadendron giganteum HOM05D005286 ORTHO05D006348 1.5e-31 141.7 139 54.7
Os04g0692800 Oryza sativa ssp. japonica HOM05D005286 ORTHO05D006348 6.1e-28 129.8 146 47.9
Nitab4.5_0008217g0010 Nicotiana tabacum HOM05D005286 ORTHO05D006348 2.2e-25 121.3 99 58.6
Glyma.04G210301 Glycine max HOM05D005286 ORTHO05D006348 3.0e-19 100.9 55 87.3
Hma1.2p1_0310F.1_g121040 Hydrangea macrophylla HOM05D005286 ORTHO05D006348 1.5e-18 98.6 61 77.0
Cre10.g425200 Chlamydomonas reinhardtii HOM05D005286 ORTHO05D006348 6.5e-14 83.2 152 39.5
Nitab4.5_0002142g0070 Nicotiana tabacum HOM05D005286 ORTHO05D006348 2.7e-12 77.8 66 60.6
Peaxi162Scf00151g00815 Petunia axillaris HOM05D005286 ORTHO05D006348 3.6e-12 77.4 79 50.6
CBR_g8549 Chara braunii HOM05D005286 ORTHO05D006348 8.0e-12 76.3 295 29.5
Oeu039336.1 Olea europaea HOM05D001574 ORTHO05D006348 5.2e-11 73.6 57 56.1
Nitab4.5_0005379g0060 Nicotiana tabacum HOM05D005286 ORTHO05D006348 1.5e-10 72.0 93 47.3
SalBow2G0549 Salvia bowleyana HOM05D002652 ORTHO05D002739 9.7e-10 69.3 69 62.3
Peaxi162Scf00151g00817 Petunia axillaris HOM05D005286 ORTHO05D006348 5.0e-06 57.0 43 67.4


User provided reference genes

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