Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0004298 Camellia sinensis var. sinensis HOM05D007881 ORTHO05D009922 1.2e-33 146.0 75 100.0
Actinidia03288 Actinidia chinensis HOM05D007881 ORTHO05D009922 2.6e-20 101.7 70 75.7
vmacro10404 Vaccinium macrocarpon HOM05D007881 ORTHO05D009922 5.7e-20 100.5 75 72.0
TAR362G1041 Trochodendron aralioides HOM05D007881 ORTHO05D009922 2.7e-14 81.6 69 59.4
Nn7g37671 Nelumbo nucifera HOM05D007881 ORTHO05D009922 8.0e-14 80.1 66 59.1
Sc16g0010420 Simmondsia chinensis HOM05D003813 ORTHO05D004557 1.8e-13 79.0 71 50.7
Ciclev10033256m.g Citrus clementina HOM05D007881 ORTHO05D009922 2.3e-13 78.6 64 57.8
CAN.G217.11 Capsicum annuum HOM05D007881 ORTHO05D009922 1.2e-12 76.3 73 50.7
Manes.12G005400 Manihot esculenta HOM05D007881 ORTHO05D009922 1.2e-12 76.3 66 54.5
Cc09_g03690 Coffea canephora HOM05D007881 ORTHO05D009922 2.6e-12 75.1 77 48.1
COL.COLO4_38031 Corchorus olitorius HOM05D007881 ORTHO05D009922 3.4e-12 74.7 61 63.9
CiPaw.07G080900 Carya illinoinensis HOM05D007881 ORTHO05D009922 4.4e-12 74.3 64 53.1
AUR62000305 Chenopodium quinoa HOM05D007881 ORTHO05D009922 4.4e-12 74.3 74 48.6
Gohir.A05G392600 Gossypium hirsutum HOM05D007881 ORTHO05D009922 5.7e-12 73.9 59 64.4
Gohir.D04G024500 Gossypium hirsutum HOM05D007881 ORTHO05D009922 5.7e-12 73.9 59 64.4
Gorai.012G027000 Gossypium raimondii HOM05D007881 ORTHO05D009922 5.7e-12 73.9 59 64.4
Prupe.6G361800 Prunus persica HOM05D007881 ORTHO05D009922 5.7e-12 73.9 77 46.8
Solyc04g056425.1 Solanum lycopersicum HOM05D007881 ORTHO05D009922 5.7e-12 73.9 56 60.7
Sopen04g025320 Solanum pennellii HOM05D000039 ORTHO05D000366 5.7e-12 73.9 73 50.7
Eucgr.B01417 Eucalyptus grandis HOM05D007881 ORTHO05D009922 7.5e-12 73.6 68 52.9
AUR62006650 Chenopodium quinoa HOM05D007881 ORTHO05D009922 1.3e-11 72.8 65 56.9
Thecc.05G194300 Theobroma cacao HOM05D007881 ORTHO05D009922 1.3e-11 72.8 59 57.6
Nitab4.5_0000083g0100 Nicotiana tabacum HOM05D007881 ORTHO05D009922 1.7e-11 72.4 63 52.4
CARHR005530 Cardamine hirsuta HOM05D007881 ORTHO05D009922 2.2e-11 72.0 46 67.4
QL12p018644 Quercus lobata HOM05D007881 ORTHO05D009922 2.2e-11 72.0 74 48.6
Atru.chr6.1889 Acer truncatum HOM05D007881 ORTHO05D009922 2.8e-11 71.6 69 56.5
Oeu034791.1 Olea europaea HOM05D007881 ORTHO05D009922 3.7e-11 71.2 68 50.0
AL1G15960 Arabidopsis lyrata HOM05D007881 ORTHO05D009922 4.8e-11 70.9 59 55.9
PGR119G1449 Punica granatum HOM05D007881 ORTHO05D009922 8.3e-11 70.1 67 49.3
Potri.012G134200 Populus trichocarpa HOM05D007881 ORTHO05D009922 1.1e-10 69.7 44 70.5
Sp1g04830 Schrenkiella parvula HOM05D007881 ORTHO05D009922 1.1e-10 69.7 44 68.2
THA.LOC109117253 Tarenaya hassleriana HOM05D007881 ORTHO05D009922 1.1e-10 69.7 43 69.8
AT1G06010 Arabidopsis thaliana HOM05D007881 ORTHO05D009922 1.4e-10 69.3 67 49.3
HanXRQChr16g0510911 Helianthus annuus HOM05D007881 ORTHO05D009922 1.4e-10 69.3 44 65.9
Nitab4.5_0001435g0080 Nicotiana tabacum HOM05D007881 ORTHO05D009922 1.8e-10 68.9 73 45.2
Peaxi162Scf00048g00055 Petunia axillaris HOM05D007881 ORTHO05D009922 1.8e-10 68.9 65 50.8
Carub.0001s0535 Capsella rubella HOM05D007881 ORTHO05D009922 2.4e-10 68.6 79 45.6
Sabra15G0148100 Salix brachista HOM05D007881 ORTHO05D009922 2.4e-10 68.6 45 66.7
SalBow1G5699 Salvia bowleyana HOM05D007881 ORTHO05D009922 2.4e-10 68.6 60 48.3
ECA232G2986 Erigeron canadensis HOM05D005940 ORTHO05D007027 3.1e-10 68.2 45 60.0
FvH4_6g00460 Fragaria vesca HOM05D007881 ORTHO05D009922 3.1e-10 68.2 44 63.6
FAN02G0717 Fragaria x ananassa HOM05D007881 ORTHO05D009922 4.1e-10 67.8 44 61.4
Migut.F02122 Erythranthe guttata HOM05D007881 ORTHO05D009922 5.3e-10 67.4 69 43.5
Cpa.g.sc9.142 Carica papaya HOM05D007881 ORTHO05D009922 7.0e-10 67.0 72 51.4
Thhalv10009243m.g Eutrema salsugineum HOM05D007881 ORTHO05D009922 7.0e-10 67.0 72 50.0
Lsat_1_v5_gn_1_127981 Lactuca sativa HOM05D007881 ORTHO05D009922 7.0e-10 67.0 44 63.6
Potri.015G136500 Populus trichocarpa HOM05D007881 ORTHO05D009922 9.1e-10 66.6 44 65.9
RcHm_v2.0_Chr3g0447831 Rosa chinensis HOM05D007881 ORTHO05D009922 9.1e-10 66.6 40 65.0
FAN09G3126 Fragaria x ananassa HOM05D007881 ORTHO05D009922 1.6e-09 65.9 44 61.4
MD04G1245200 Malus domestica HOM05D007881 ORTHO05D009922 1.6e-09 65.9 76 42.1
TWI36G1222 Tripterygium wilfordii HOM05D007881 ORTHO05D009922 1.6e-09 65.9 61 49.2
arahy.Tifrunner.gnm1.ann1.X7CW9T Arachis hypogaea HOM05D007881 ORTHO05D009922 2.7e-09 65.1 62 45.2
EL10Ac4g09960 Beta vulgaris HOM05D007881 ORTHO05D009922 2.7e-09 65.1 67 49.3
A08p36200 Brassica napus HOM05D007881 ORTHO05D009922 2.7e-09 65.1 75 46.7
BcaC07g36818 Brassica carinata HOM05D007881 ORTHO05D009922 3.5e-09 64.7 40 67.5
BolC8t47025H Brassica oleracea HOM05D007881 ORTHO05D009922 3.5e-09 64.7 40 67.5
BraA08t35524Z Brassica rapa HOM05D007881 ORTHO05D009922 3.5e-09 64.7 40 67.5
MD12G1086700 Malus domestica HOM05D007881 ORTHO05D009922 3.5e-09 64.7 71 42.3
HPP92_003553 Vanilla planifolia HOM05D007881 ORTHO05D009922 3.5e-09 64.7 51 56.9
arahy.Tifrunner.gnm1.ann1.FFCC7D Arachis hypogaea HOM05D007881 ORTHO05D009922 4.5e-09 64.3 62 45.2
ClCG03G010640 Citrullus lanatus HOM05D007881 ORTHO05D009922 4.5e-09 64.3 44 56.8
CDE02G1687 Ceratophyllum demersum HOM05D007881 ORTHO05D009922 5.9e-09 63.9 60 50.0
MELO3C010052.2 Cucumis melo HOM05D007881 ORTHO05D009922 5.9e-09 63.9 45 57.8
CsaV3_1G044490 Cucumis sativus L. HOM05D007881 ORTHO05D009922 5.9e-09 63.9 45 57.8
ATR0215G006 Amborella trichopoda HOM05D007881 ORTHO05D009922 7.7e-09 63.5 55 52.7
Phvul.005G031800 Phaseolus vulgaris HOM05D007881 ORTHO05D009922 1.0e-08 63.2 46 60.9
Lalb_Chr25g0282841 Lupinus albus HOM05D007881 ORTHO05D009922 1.3e-08 62.8 43 65.1
BcaC07g42091 Brassica carinata HOM05D007881 ORTHO05D009922 1.7e-08 62.4 36 75.0
A09p67190 Brassica napus HOM05D007881 ORTHO05D009922 1.7e-08 62.4 36 75.0
C08p51460 Brassica napus HOM05D000559 ORTHO05D009922 1.7e-08 62.4 36 75.0
BolC8t52672H Brassica oleracea HOM05D007881 ORTHO05D009922 1.7e-08 62.4 36 75.0
DCAR_007684 Daucus carota HOM05D007881 ORTHO05D009922 1.7e-08 62.4 40 67.5
Glyma.11G151200 Glycine max HOM05D007881 ORTHO05D009922 1.7e-08 62.4 37 75.7
Medtr3g032520 Medicago truncatula HOM05D007881 ORTHO05D009922 1.7e-08 62.4 41 61.0
GSVIVG01019086001 Vitis vinifera HOM05D007881 ORTHO05D009922 1.7e-08 62.4 54 53.7
Lj3g0003474 Lotus japonicus HOM05D007881 ORTHO05D009922 2.2e-08 62.0 44 56.8
Zm00001eb067480 Zea mays HOM05D007881 ORTHO05D009922 3.8e-08 61.2 67 43.3
Psat5g211080 Pisum sativum HOM05D007881 ORTHO05D009922 5.0e-08 60.8 68 42.6
Aqoxy3G03631 Aquilegia oxysepala HOM05D007881 ORTHO05D009922 8.5e-08 60.1 40 60.0
MBI17_g00966_MAGBIO Magnolia biondii HOM05D007881 ORTHO05D009922 8.5e-08 60.1 46 56.5
PGSC0003DMG400007262 Solanum tuberosum HOM05D007881 ORTHO05D009922 1.1e-07 59.7 99 37.4
Psat5g210160 Pisum sativum HOM05D007881 ORTHO05D009922 2.5e-07 58.5 68 41.2
arahy.Tifrunner.gnm1.ann1.FG2V1D Arachis hypogaea HOM05D007881 ORTHO05D009922 3.2e-07 58.2 44 56.8
Sed0019316 Sechium edule HOM05D007881 ORTHO05D009922 2.1e-06 55.5 38 57.9


User provided reference genes

Program Settings