Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0004293 Camellia sinensis var. sinensis HOM05D005284 ORTHO05D006609 2.4e-39 164.9 73 100.0
PGR083G0243 Punica granatum HOM05D005284 ORTHO05D006609 1.2e-14 82.8 45 73.3
Rhsim13G0125000 Rhododendron simsii HOM05D005284 ORTHO05D006609 7.8e-14 80.1 39 84.6
Dinv04290 Davidia involucrata HOM05D005284 ORTHO05D006609 1.3e-13 79.3 38 86.8
Dinv04294 Davidia involucrata HOM05D005284 ORTHO05D006609 1.3e-13 79.3 38 86.8
Peaxi162Scf00155g00513 Petunia axillaris HOM05D005284 ORTHO05D006609 1.7e-13 79.0 38 84.2
CSS0000752 Camellia sinensis var. sinensis HOM05D005284 ORTHO05D006609 2.3e-13 78.6 34 97.1
ClCG01G025350 Citrullus lanatus HOM05D005284 ORTHO05D006609 2.3e-13 78.6 39 79.5
MD10G1243300 Malus domestica HOM05D005284 ORTHO05D006609 2.3e-13 78.6 38 84.2
Prupe.4G100600 Prunus persica HOM05D005284 ORTHO05D006609 2.3e-13 78.6 38 84.2
Actinidia29265 Actinidia chinensis HOM05D005284 ORTHO05D006609 3.9e-13 77.8 38 84.2
CANSAT78G1346 Cannabis sativa HOM05D005284 ORTHO05D006609 3.9e-13 77.8 38 84.2
COL.COLO4_26880 Corchorus olitorius HOM05D005284 ORTHO05D006609 5.0e-13 77.4 38 81.6
Dinv23919 Davidia involucrata HOM05D005284 ORTHO05D006609 5.0e-13 77.4 34 94.1
FAN16G1000 Fragaria x ananassa HOM05D005284 ORTHO05D006609 5.0e-13 77.4 38 84.2
Manes.14G126000 Manihot esculenta HOM05D005284 ORTHO05D006609 5.0e-13 77.4 37 86.5
PSO541G1959 Papaver somniferum HOM05D005284 ORTHO05D006609 5.0e-13 77.4 38 86.8
PSO675G4367 Papaver somniferum HOM05D005284 ORTHO05D006609 5.0e-13 77.4 38 86.8
CDE02G0074 Ceratophyllum demersum HOM05D005284 ORTHO05D006609 6.6e-13 77.0 38 78.9
HanXRQChr12g0359761 Helianthus annuus HOM05D005284 ORTHO05D006609 6.6e-13 77.0 37 83.8
Cpa.g.sc489.2 Carica papaya HOM05D005284 ORTHO05D006609 8.6e-13 76.6 38 84.2
CDE05G2614 Ceratophyllum demersum HOM05D005284 ORTHO05D006609 8.6e-13 76.6 38 78.9
MELO3C007049.2 Cucumis melo HOM05D005284 ORTHO05D006609 1.1e-12 76.3 38 78.9
CsaV3_6G052590 Cucumis sativus L. HOM05D005284 ORTHO05D006609 1.1e-12 76.3 38 78.9
FvH4_3g11170 Fragaria vesca HOM05D005284 ORTHO05D006609 1.1e-12 76.3 38 81.6
Gohir.A10G005900 Gossypium hirsutum HOM05D005284 ORTHO05D006609 1.1e-12 76.3 38 78.9
Gohir.D10G005900 Gossypium hirsutum HOM05D005284 ORTHO05D006609 1.1e-12 76.3 38 78.9
Gorai.011G006700 Gossypium raimondii HOM05D005284 ORTHO05D006609 1.1e-12 76.3 38 78.9
QL05p064527 Quercus lobata HOM05D005284 ORTHO05D006609 1.1e-12 76.3 38 81.6
RcHm_v2.0_Chr5g0018081 Rosa chinensis HOM05D005284 ORTHO05D006609 1.1e-12 76.3 38 81.6
Sc04g0004240 Simmondsia chinensis HOM05D005284 ORTHO05D006609 1.1e-12 76.3 38 78.9
Cfa000771 Carpinus fangiana HOM05D005284 ORTHO05D006609 1.5e-12 75.9 38 81.6
AUR62033057 Chenopodium quinoa HOM05D005284 ORTHO05D006609 1.5e-12 75.9 38 81.6
Ciclev10016195m.g Citrus clementina HOM05D005284 ORTHO05D006609 1.5e-12 75.9 38 78.9
MD05G1265300 Malus domestica HOM05D005284 ORTHO05D006609 1.5e-12 75.9 38 78.9
Nn7g37791 Nelumbo nucifera HOM05D005284 ORTHO05D006609 1.5e-12 75.9 36 88.9
Nitab4.5_0000100g0010 Nicotiana tabacum HOM05D005284 ORTHO05D006609 1.5e-12 75.9 38 81.6
Potri.011G157500 Populus trichocarpa HOM05D005284 ORTHO05D006609 1.5e-12 75.9 38 81.6
TWI38G1381 Tripterygium wilfordii HOM05D005284 ORTHO05D006609 1.5e-12 75.9 38 81.6
TAR626G0222 Trochodendron aralioides HOM05D005284 ORTHO05D006609 1.5e-12 75.9 38 84.2
EL10Ac9g22329 Beta vulgaris HOM05D005284 ORTHO05D006609 1.9e-12 75.5 38 78.9
ECA234G4512 Erigeron canadensis HOM05D005284 ORTHO05D006609 1.9e-12 75.5 37 81.1
vmacro03466 Vaccinium macrocarpon HOM05D005284 ORTHO05D006609 1.9e-12 75.5 38 81.6
Atru.chr10.695 Acer truncatum HOM05D005284 ORTHO05D006609 2.5e-12 75.1 38 78.9
Carub.0008s0404 Capsella rubella HOM05D005284 ORTHO05D006609 2.5e-12 75.1 38 81.6
CiPaw.09G147600 Carya illinoinensis HOM05D005284 ORTHO05D006609 2.5e-12 75.1 38 81.6
Eucgr.D01014 Eucalyptus grandis HOM05D005284 ORTHO05D006609 2.5e-12 75.1 38 78.9
CARHR178630 Cardamine hirsuta HOM05D005284 ORTHO05D006609 3.3e-12 74.7 38 81.6
Migut.M01924 Erythranthe guttata HOM05D005284 ORTHO05D006609 3.3e-12 74.7 38 78.9
Thhalv10000956m.g Eutrema salsugineum HOM05D005284 ORTHO05D006609 3.3e-12 74.7 38 81.6
Lj2C336G9 Lonicera japonica HOM05D005284 ORTHO05D006609 3.3e-12 74.7 36 86.1
Phvul.002G201500 Phaseolus vulgaris HOM05D005284 ORTHO05D006609 3.3e-12 74.7 38 76.3
Solyc02g021700.4 Solanum lycopersicum HOM05D005284 ORTHO05D006609 3.3e-12 74.7 38 78.9
Sopen02g006280 Solanum pennellii HOM05D005284 ORTHO05D006609 3.3e-12 74.7 38 78.9
PGSC0003DMG400015105 Solanum tuberosum HOM05D005284 ORTHO05D006609 3.3e-12 74.7 38 78.9
THA.LOC104812070 Tarenaya hassleriana HOM05D005284 ORTHO05D006609 3.3e-12 74.7 38 81.6
arahy.Tifrunner.gnm1.ann1.06Y4PY Arachis hypogaea HOM05D005284 ORTHO05D006609 4.3e-12 74.3 34 85.3
DCAR_000834 Daucus carota HOM05D005284 ORTHO05D006609 4.3e-12 74.3 38 81.6
Lsat_1_v5_gn_5_75320 Lactuca sativa HOM05D005284 ORTHO05D006609 4.3e-12 74.3 37 83.8
Lalb_Chr12g0208701 Lupinus albus HOM05D005284 ORTHO05D006609 4.3e-12 74.3 38 76.3
Nitab4.5_0000607g0120 Nicotiana tabacum HOM05D005284 ORTHO05D006609 4.3e-12 74.3 36 83.3
Sabra11G0142700 Salix brachista HOM05D005284 ORTHO05D006609 4.3e-12 74.3 38 78.9
SGA_v2.0_scaffold1G00293 Striga asiatica HOM05D006189 ORTHO05D007765 4.3e-12 74.3 39 71.8
Aa31LG9G8740 Aethionema arabicum HOM05D005284 ORTHO05D006609 5.6e-12 73.9 39 76.9
Aqoxy1G01504 Aquilegia oxysepala HOM05D005284 ORTHO05D006609 5.6e-12 73.9 38 76.3
Aqoxy1G01508 Aquilegia oxysepala HOM05D005284 ORTHO05D006609 5.6e-12 73.9 38 76.3
CAN.G39.30 Capsicum annuum HOM05D005284 ORTHO05D006609 5.6e-12 73.9 38 78.9
AUR62042202 Chenopodium quinoa HOM05D005284 ORTHO05D006609 5.6e-12 73.9 34 88.2
Cc08_g07170 Coffea canephora HOM05D005284 ORTHO05D006609 5.6e-12 73.9 38 78.9
HPP92_000943 Vanilla planifolia HOM05D005284 ORTHO05D006609 5.6e-12 73.9 38 81.6
GSVIVG01021778001 Vitis vinifera HOM05D005284 ORTHO05D006609 5.6e-12 73.9 38 76.3
Sed0002797 Sechium edule HOM05D005284 ORTHO05D006609 7.3e-12 73.6 38 76.3
Thecc.06G009000 Theobroma cacao HOM05D005284 ORTHO05D006609 7.3e-12 73.6 34 85.3
Ca_18306_v3 Cicer arietinum L. HOM05D005284 ORTHO05D006609 9.5e-12 73.2 38 71.1
FAN21G1306 Fragaria x ananassa HOM05D005284 ORTHO05D006609 9.5e-12 73.2 38 78.9
Medtr4g094452 Medicago truncatula HOM05D005284 ORTHO05D006609 9.5e-12 73.2 38 71.1
Psat7g094280 Pisum sativum HOM05D005284 ORTHO05D006609 9.5e-12 73.2 38 71.1
AT5G44450 Arabidopsis thaliana HOM05D005284 ORTHO05D006609 1.2e-11 72.8 38 78.9
MSTRG.7559 Avicennia marina HOM05D005284 ORTHO05D006609 1.2e-11 72.8 38 78.9
Lj4g0006881 Lotus japonicus HOM05D005284 ORTHO05D006609 1.2e-11 72.8 38 73.7
TPR.G23781 Trifolium pratense HOM05D005284 ORTHO05D006609 1.2e-11 72.8 38 71.1
VMungo0251G0080 Vigna mungo HOM05D005284 ORTHO05D006609 1.2e-11 72.8 38 73.7
Duzib235G1425 Durio zibethinus HOM05D005284 ORTHO05D006609 2.1e-11 72.0 34 82.4
Ah.01g003600 Amaranthus hybridus HOM05D005284 ORTHO05D006609 2.8e-11 71.6 38 73.7
BcaB07g30944 Brassica carinata HOM05D005284 ORTHO05D006609 2.8e-11 71.6 38 78.9
BcaC04g21829 Brassica carinata HOM05D005284 ORTHO05D006609 2.8e-11 71.6 38 78.9
C09p26950 Brassica napus HOM05D005284 ORTHO05D006609 2.8e-11 71.6 38 78.9
BolC9t55580H Brassica oleracea HOM05D005284 ORTHO05D006609 2.8e-11 71.6 38 78.9
FAN25G2940 Fragaria x ananassa HOM05D005284 ORTHO05D006609 2.8e-11 71.6 38 76.3
Sp2g09280 Schrenkiella parvula HOM05D005284 ORTHO05D006609 2.8e-11 71.6 38 78.9
Thecc.06G010000 Theobroma cacao HOM05D005284 ORTHO05D006609 3.6e-11 71.2 34 82.4
Glyma.08G079300 Glycine max HOM05D005284 ORTHO05D006609 4.7e-11 70.9 38 71.1
Oeu000506.1 Olea europaea HOM05D005284 ORTHO05D006609 4.7e-11 70.9 34 79.4
unitig_748.g7349 Utricularia gibba HOM05D005284 ORTHO05D006609 4.7e-11 70.9 37 75.7
CARHR114890 Cardamine hirsuta HOM05D005284 ORTHO05D006609 6.1e-11 70.5 38 78.9
AL8G15400 Arabidopsis lyrata HOM05D005284 ORTHO05D006609 1.0e-10 69.7 38 76.3
A09p21140 Brassica napus HOM05D005284 ORTHO05D006609 1.0e-10 69.7 38 76.3
BraA09t37720Z Brassica rapa HOM05D005284 ORTHO05D006609 1.0e-10 69.7 38 76.3
SEGI_24201 Sequoiadendron giganteum HOM05D005284 ORTHO05D006609 1.0e-10 69.7 37 75.7
Zm00001eb059610 Zea mays HOM05D005284 ORTHO05D006609 1.0e-10 69.7 38 71.1
AagrBONN_evm.TU.Sc2ySwM_344.3509 Anthoceros agrestis HOM05D005284 ORTHO05D006609 1.4e-10 69.3 33 84.8
BcaC06g31615 Brassica carinata HOM05D005284 ORTHO05D006609 1.4e-10 69.3 38 76.3
A06p47190 Brassica napus HOM05D005284 ORTHO05D006609 1.4e-10 69.3 38 76.3
BraA06t27590Z Brassica rapa HOM05D005284 ORTHO05D006609 1.4e-10 69.3 38 76.3
MBI18_g27137_MAGBIO Magnolia biondii HOM05D005284 ORTHO05D006609 1.4e-10 69.3 38 73.7
SMO364G0300 Selaginella moellendorffii HOM05D005284 ORTHO05D006609 1.4e-10 69.3 35 80.0
Glyma.05G124100 Glycine max HOM05D005284 ORTHO05D006609 2.3e-10 68.6 38 68.4
Os03g0780900 Oryza sativa ssp. japonica HOM05D005284 ORTHO05D006609 2.3e-10 68.6 38 68.4
SalBow8G0467 Salvia bowleyana HOM05D005284 ORTHO05D006609 2.3e-10 68.6 34 76.5
Aa31LG2G17800 Aethionema arabicum HOM05D005284 ORTHO05D006609 3.1e-10 68.2 34 79.4
ATR0763G041 Amborella trichopoda HOM05D005284 ORTHO05D006609 3.1e-10 68.2 34 76.5
Glyma.04G136150 Glycine max HOM05D005284 ORTHO05D006609 3.1e-10 68.2 34 76.5
SalBow3G1375 Salvia bowleyana HOM05D005284 ORTHO05D006609 3.1e-10 68.2 34 76.5
BcaC06g34553 Brassica carinata HOM05D005284 ORTHO05D006609 6.8e-10 67.0 38 73.7
C07p27240 Brassica napus HOM05D005284 ORTHO05D006609 6.8e-10 67.0 38 73.7
BolC7t43252H Brassica oleracea HOM05D005284 ORTHO05D006609 6.8e-10 67.0 38 73.7
MCO11G684 Micromonas commoda HOM05D005284 ORTHO05D006609 1.2e-09 66.2 35 65.7
CBR_g19259 Chara braunii HOM05D005284 ORTHO05D006609 1.1e-07 59.7 31 71.0
Mapoly0083s0001 Marchantia polymorpha HOM05D005284 ORTHO05D006609 1.9e-07 58.9 34 67.6


User provided reference genes

Program Settings