Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0004284 Camellia sinensis var. sinensis HOM05D006823 ORTHO05D008608 1.2e-128 463.4 260 100.0
CSS0029489 Camellia sinensis var. sinensis HOM05D006823 ORTHO05D008608 1.6e-122 443.0 262 90.1
CSS0050046 Camellia sinensis var. sinensis HOM05D006823 ORTHO05D008608 3.2e-110 402.1 262 87.4
Actinidia17264 Actinidia chinensis HOM05D006823 ORTHO05D008608 6.2e-90 334.7 262 75.2
Rhsim04G0097800 Rhododendron simsii HOM05D006823 ORTHO05D008608 6.9e-89 331.3 265 74.3
Dinv24090 Davidia involucrata HOM05D006823 ORTHO05D008608 1.1e-86 323.9 263 71.1
FAN09G2832 Fragaria x ananassa HOM05D006823 ORTHO05D008608 9.0e-81 304.3 241 70.5
FvH4_6g22650 Fragaria vesca HOM05D006823 ORTHO05D008608 1.2e-80 303.9 261 67.4
FAN14G3816 Fragaria x ananassa HOM05D006823 ORTHO05D008608 1.0e-79 300.8 262 66.8
FAN14G5352 Fragaria x ananassa HOM05D006823 ORTHO05D008608 2.9e-79 299.3 262 66.8
ClCG10G017400 Citrullus lanatus HOM05D006823 ORTHO05D008608 3.8e-79 298.9 266 67.7
Manes.08G045100 Manihot esculenta HOM05D006823 ORTHO05D008608 3.8e-79 298.9 245 70.2
Nn7g36040 Nelumbo nucifera HOM05D006823 ORTHO05D008608 6.5e-79 298.1 264 65.2
CsaV3_3G038970 Cucumis sativus L. HOM05D006823 ORTHO05D008608 1.9e-78 296.6 263 66.9
FAN05G5147 Fragaria x ananassa HOM05D006823 ORTHO05D008608 4.2e-78 295.4 243 68.7
Atru.chr8.1064 Acer truncatum HOM05D006823 ORTHO05D008608 9.3e-78 294.3 263 65.4
Gohir.D09G123300 Gossypium hirsutum HOM05D006823 ORTHO05D008608 9.3e-78 294.3 262 67.6
Duzib093G0556 Durio zibethinus HOM05D006823 ORTHO05D008608 1.2e-77 293.9 265 67.9
Gorai.006G141900 Gossypium raimondii HOM05D006823 ORTHO05D008608 2.1e-77 293.1 262 67.6
GSVIVG01033521001 Vitis vinifera HOM05D006823 ORTHO05D008608 6.0e-77 291.6 246 68.3
Thecc.05G168800 Theobroma cacao HOM05D006823 ORTHO05D008608 1.8e-76 290.0 242 71.1
TWI74G0728 Tripterygium wilfordii HOM05D006823 ORTHO05D008608 3.0e-76 289.3 247 69.6
DCAR_013557 Daucus carota HOM05D006823 ORTHO05D008608 8.7e-76 287.7 245 67.3
Potri.016G048600 Populus trichocarpa HOM05D006823 ORTHO05D008608 4.3e-75 285.4 267 64.0
Sed0007671 Sechium edule HOM05D006823 ORTHO05D008608 4.3e-75 285.4 263 65.4
MD14G1060400 Malus domestica HOM05D006823 ORTHO05D008608 9.7e-75 284.3 248 68.1
Prupe.7G074100 Prunus persica HOM05D006823 ORTHO05D008608 3.7e-74 282.3 249 67.5
Lsat_1_v5_gn_8_75541 Lactuca sativa HOM05D006823 ORTHO05D008608 8.2e-74 281.2 251 68.1
THA.LOC104802464 Tarenaya hassleriana HOM05D006823 ORTHO05D008608 2.4e-73 279.6 267 63.7
CANSAT64G2950 Cannabis sativa HOM05D006823 ORTHO05D008608 5.3e-73 278.5 250 68.4
RcHm_v2.0_Chr3g0480211 Rosa chinensis HOM05D006823 ORTHO05D008608 5.3e-73 278.5 243 66.7
Ciclev10012490m.g Citrus clementina HOM05D006823 ORTHO05D008608 6.9e-73 278.1 261 62.8
PSO384G3045 Papaver somniferum HOM05D006823 ORTHO05D008608 9.0e-73 277.7 245 65.7
Phvul.007G258100 Phaseolus vulgaris HOM05D006823 ORTHO05D008608 9.0e-73 277.7 245 64.5
Glyma.02G177100 Glycine max HOM05D006823 ORTHO05D008608 1.5e-72 276.9 245 64.1
Lj5g0012941 Lotus japonicus HOM05D006823 ORTHO05D008608 3.4e-72 275.8 266 63.2
HanXRQChr05g0132841 Helianthus annuus HOM05D006823 ORTHO05D008608 7.6e-72 274.6 250 68.0
Sabra16G0052300 Salix brachista HOM05D006823 ORTHO05D008608 1.0e-71 274.2 268 62.3
CiPaw.09G031900 Carya illinoinensis HOM05D006823 ORTHO05D008608 1.3e-71 273.9 245 65.7
FAN02G3510 Fragaria x ananassa HOM05D006823 ORTHO05D008608 2.2e-71 273.1 245 67.3
arahy.Tifrunner.gnm1.ann1.DD58DK Arachis hypogaea HOM05D006823 ORTHO05D008608 2.9e-71 272.7 242 63.2
PSO339G6540 Papaver somniferum HOM05D006823 ORTHO05D008608 2.9e-71 272.7 248 64.9
Medtr1g053570 Medicago truncatula HOM05D006823 ORTHO05D008608 1.1e-70 270.8 266 56.8
Psat1g009680 Pisum sativum HOM05D006823 ORTHO05D008608 2.5e-70 269.6 246 61.4
Ca_12095_v3 Cicer arietinum L. HOM05D006823 ORTHO05D008608 7.2e-70 268.1 261 59.4
EL10Ac3g06941 Beta vulgaris HOM05D006823 ORTHO05D008608 9.3e-70 267.7 271 58.7
COL.COLO4_36138 Corchorus olitorius HOM05D006823 ORTHO05D008608 9.3e-70 267.7 242 63.2
CSS0035925 Camellia sinensis var. sinensis HOM05D006823 ORTHO05D008608 2.1e-69 266.5 154 93.5
CDE04G3233 Ceratophyllum demersum HOM05D006823 ORTHO05D008608 2.7e-69 266.2 244 65.2
TPR.G24279 Trifolium pratense HOM05D006823 ORTHO05D008608 4.6e-69 265.4 266 54.9
Ca_26114_v3 Cicer arietinum L. HOM05D006823 ORTHO05D008608 1.3e-68 263.8 261 59.0
Hund19193 Selenicereus undatus HOM05D006823 ORTHO05D008608 3.9e-68 262.3 270 60.0
TAR623G1194 Trochodendron aralioides HOM05D006823 ORTHO05D008608 3.9e-68 262.3 261 64.4
MSTRG.19895 Avicennia marina HOM05D006823 ORTHO05D008608 1.1e-67 260.8 241 63.1
Sp5g04810 Schrenkiella parvula HOM05D006823 ORTHO05D008608 1.5e-67 260.4 245 62.9
Thhalv10006171m.g Eutrema salsugineum HOM05D006823 ORTHO05D008608 1.9e-67 260.0 245 62.9
AL5G39560 Arabidopsis lyrata HOM05D006823 ORTHO05D008608 2.5e-67 259.6 266 59.4
CARHR168210 Cardamine hirsuta HOM05D006823 ORTHO05D008608 2.5e-67 259.6 245 62.4
arahy.Tifrunner.gnm1.ann1.F8HZ0X Arachis hypogaea HOM05D006823 ORTHO05D008608 3.3e-67 259.2 242 62.0
Lj2A371G33 Lonicera japonica HOM05D006823 ORTHO05D008608 4.3e-67 258.8 244 66.4
Carub.0005s2475 Capsella rubella HOM05D006823 ORTHO05D008608 5.7e-67 258.5 243 59.3
vmacro09107 Vaccinium macrocarpon HOM05D006823 ORTHO05D008608 1.3e-66 257.3 221 71.0
AT3G57910 Arabidopsis thaliana HOM05D006823 ORTHO05D008608 3.7e-66 255.8 266 58.6
Solyc11g065380.2 Solanum lycopersicum HOM05D006823 ORTHO05D008608 3.7e-66 255.8 243 63.4
Eucgr.K01827 Eucalyptus grandis HOM05D006823 ORTHO05D008608 6.3e-66 255.0 267 61.4
A07p23720 Brassica napus HOM05D002947 ORTHO05D003447 8.2e-66 254.6 247 61.5
BraA07t30025Z Brassica rapa HOM05D006823 ORTHO05D008608 1.8e-65 253.4 247 61.1
C06p24950 Brassica napus HOM05D002947 ORTHO05D003447 2.4e-65 253.1 246 61.4
BcaC08g44877 Brassica carinata HOM05D006823 ORTHO05D008608 6.9e-65 251.5 246 61.0
BolC6t37647H Brassica oleracea HOM05D002947 ORTHO05D003447 6.9e-65 251.5 246 61.0
Glyma.10G091300 Glycine max HOM05D006823 ORTHO05D008608 1.2e-64 250.8 264 55.3
BcaB02g07567 Brassica carinata HOM05D006823 ORTHO05D008608 2.0e-64 250.0 246 60.2
MBI01_g24371_MAGBIO Magnolia biondii HOM05D006823 ORTHO05D008608 2.6e-64 249.6 275 57.5
SGA_v2.0_scaffold69G23076 Striga asiatica HOM05D006823 ORTHO05D008608 4.5e-64 248.8 262 58.4
Lalb_Chr10g0091151 Lupinus albus HOM05D006823 ORTHO05D008608 1.0e-63 247.7 249 57.0
PGSC0003DMG401029997 Solanum tuberosum HOM05D006823 ORTHO05D008608 2.5e-62 243.0 243 61.7
arahy.Tifrunner.gnm1.ann1.R1CCT6 Arachis hypogaea HOM05D006823 ORTHO05D008608 5.5e-62 241.9 209 64.6
unitig_26.g9037 Utricularia gibba HOM05D006823 ORTHO05D008608 2.1e-61 240.0 241 58.9
Aa31LG10G12620 Aethionema arabicum HOM05D006823 ORTHO05D008608 3.6e-61 239.2 246 59.8
CSS0008909 Camellia sinensis var. sinensis HOM05D006823 ORTHO05D008608 6.1e-61 238.4 150 82.7
Nitab4.5_0003572g0020 Nicotiana tabacum HOM05D006823 ORTHO05D008608 1.8e-60 236.9 246 58.9
Haze_19965 Corylus avellana HOM05D006823 ORTHO05D008608 6.7e-60 235.0 245 61.2
CSS0018235 Camellia sinensis var. sinensis HOM05D006823 ORTHO05D008608 1.1e-59 234.2 160 83.8
Nitab4.5_0000016g0280 Nicotiana tabacum HOM05D006823 ORTHO05D008608 1.5e-59 233.8 245 58.0
Sc25g0005140 Simmondsia chinensis HOM05D006823 ORTHO05D008608 3.3e-59 232.6 244 59.4
arahy.Tifrunner.gnm1.ann1.R3LTDD Arachis hypogaea HOM05D006823 ORTHO05D008608 6.3e-58 228.4 219 61.6
CAN.G717.3 Capsicum annuum HOM05D006823 ORTHO05D008608 8.2e-58 228.0 226 63.3
MELO3C009640.2 Cucumis melo HOM05D006823 ORTHO05D008608 1.4e-57 227.3 224 66.5
HPP92_015470 Vanilla planifolia HOM05D006823 ORTHO05D008608 5.9e-56 221.9 244 56.1
Migut.J01822 Erythranthe guttata HOM05D006823 ORTHO05D008608 1.1e-54 217.6 243 57.2
Gohir.A09G127050 Gossypium hirsutum HOM05D006823 ORTHO05D008608 1.1e-54 217.6 203 61.6
arahy.Tifrunner.gnm1.ann1.HB0B2V Arachis hypogaea HOM05D006823 ORTHO05D008608 1.4e-54 217.2 241 56.8
Sopen11g025160 Solanum pennellii HOM05D006823 ORTHO05D008608 7.2e-54 214.9 243 58.0
ECA236G4823 Erigeron canadensis HOM05D006823 ORTHO05D000001 1.6e-53 213.8 238 57.6
ATR0605G325 Amborella trichopoda HOM05D006823 ORTHO05D008608 1.8e-52 210.3 206 61.7
AUR62024323 Chenopodium quinoa HOM05D006823 ORTHO05D008608 6.7e-52 208.4 262 49.2
AUR62012062 Chenopodium quinoa HOM05D006823 ORTHO05D008608 3.3e-51 206.1 262 48.9
Cc00_g14630 Coffea canephora HOM05D006823 ORTHO05D008608 1.3e-50 204.1 246 56.5
VMungo0720G1016 Vigna mungo HOM05D006823 ORTHO05D008608 3.7e-50 202.6 187 58.3
CSS0004878 Camellia sinensis var. sinensis HOM05D006823 ORTHO05D008608 2.4e-49 199.9 118 98.3
CSS0021268 Camellia sinensis var. sinensis HOM05D006823 ORTHO05D008608 2.4e-49 199.9 118 98.3
Aqoxy1G00161 Aquilegia oxysepala HOM05D006823 ORTHO05D008608 5.9e-48 195.3 179 59.2
Zm00001eb035020 Zea mays HOM05D006823 ORTHO05D008608 2.9e-47 193.0 251 45.4
SEGI_05037 Sequoiadendron giganteum HOM05D006823 ORTHO05D008608 1.5e-43 180.6 245 42.9
Os08g0509500 Oryza sativa ssp. japonica HOM05D006823 ORTHO05D008608 2.8e-42 176.4 246 50.8
FvH4_6g22250 Fragaria vesca HOM05D006823 ORTHO05D008608 6.3e-42 175.3 153 62.7
Mapoly0104s0025 Marchantia polymorpha HOM05D006823 ORTHO05D008608 1.4e-36 157.5 255 39.2
Pp3c21_14790 Physcomitrium patens HOM05D006823 ORTHO05D008608 2.4e-33 146.7 267 41.6
arahy.Tifrunner.gnm1.ann1.WS1HM8 Arachis hypogaea HOM05D006823 ORTHO05D008608 1.4e-28 131.0 116 62.9
AagrBONN_evm.TU.Sc2ySwM_369.80 Anthoceros agrestis HOM05D006823 ORTHO05D008608 8.9e-28 128.3 244 38.5
Zm00001eb106730 Zea mays HOM05D006823 ORTHO05D008608 7.0e-25 118.6 161 45.3
arahy.Tifrunner.gnm1.ann1.ZK4YW6 Arachis hypogaea HOM05D006823 ORTHO05D008608 5.0e-23 112.5 220 39.5
SMO145G0064 Selaginella moellendorffii HOM05D006823 ORTHO05D008608 9.5e-22 108.2 245 35.5
Zm00001eb092000 Zea mays HOM05D006823 ORTHO05D008608 1.3e-15 87.8 161 38.5
CBR_g4860 Chara braunii HOM05D006823 ORTHO05D008608 5.0e-15 85.9 330 27.9
arahy.Tifrunner.gnm1.ann1.V1GDUY Arachis hypogaea HOM05D006823 ORTHO05D008608 1.1e-14 84.7 71 62.0
Cpa.g.sc85.85 Carica papaya HOM05D006823 ORTHO05D008608 2.0e-11 73.9 45 71.1
Zm00001eb385990 Zea mays HOM05D006823 ORTHO05D008608 8.3e-10 68.6 132 39.4
Peaxi162Scf00258g00118 Petunia axillaris HOM05D006823 ORTHO05D008608 4.1e-09 66.2 57 57.9
Zm00001eb116260 Zea mays HOM05D006823 ORTHO05D008608 1.2e-08 64.7 109 39.4


User provided reference genes

Program Settings