Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0004272 Camellia sinensis var. sinensis HOM05D005059 ORTHO05D004248 2.8e-46 188.3 100 100.0
Dinv18371 Davidia involucrata HOM05D000126 ORTHO05D000085 2.7e-17 92.0 92 57.6
Nn6g34461 Nelumbo nucifera HOM05D005059 ORTHO05D004248 2.7e-17 92.0 94 54.3
CSS0027903 Camellia sinensis var. sinensis HOM05D008890 ORTHO05D004248 1.3e-16 89.7 95 64.2
Hma1.2p1_1016F.1_g248040 Hydrangea macrophylla HOM05D005059 ORTHO05D004248 1.8e-16 89.4 92 55.4
Nn3g21078 Nelumbo nucifera HOM05D005059 ORTHO05D004248 1.8e-16 89.4 86 57.0
TAR626G0600 Trochodendron aralioides HOM05D005059 ORTHO05D004248 6.7e-16 87.4 93 54.8
TAR624G0872 Trochodendron aralioides HOM05D005059 ORTHO05D004248 3.3e-15 85.1 92 52.2
TAR624G0770 Trochodendron aralioides HOM05D005059 ORTHO05D004248 1.3e-14 83.2 91 52.7
TAR627G0439 Trochodendron aralioides HOM05D005059 ORTHO05D004248 2.1e-14 82.4 93 50.5
Aqoxy4G00224 Aquilegia oxysepala HOM05D005059 ORTHO05D004248 5.8e-12 74.3 87 47.1
Rhsim04G0027000 Rhododendron simsii HOM05D002453 ORTHO05D008746 5.8e-12 74.3 70 55.7
MBI06_g16696_MAGBIO Magnolia biondii HOM05D005059 ORTHO05D004248 7.6e-12 73.9 89 49.4
Dinv15004 Davidia involucrata HOM05D005059 ORTHO05D004248 2.2e-11 72.4 71 54.9
TAR629G2882 Trochodendron aralioides HOM05D005059 ORTHO05D004248 2.2e-11 72.4 83 48.2
QL05p049931 Quercus lobata HOM05D005059 ORTHO05D004248 4.9e-11 71.2 89 47.2
Thecc.06G165400 Theobroma cacao HOM05D005059 ORTHO05D004248 1.9e-10 69.3 95 46.3
CiPaw.09G073100 Carya illinoinensis HOM05D005059 ORTHO05D004248 7.1e-10 67.4 95 42.1
Hma1.2p1_0113F.1_g055120 Hydrangea macrophylla HOM05D005059 ORTHO05D004248 7.1e-10 67.4 92 46.7
Atru.chr10.1568 Acer truncatum HOM05D005059 ORTHO05D004248 9.3e-10 67.0 83 49.4
COL.COLO4_31233 Corchorus olitorius HOM05D005059 ORTHO05D004248 9.3e-10 67.0 95 45.3
Thecc.07G128300 Theobroma cacao HOM05D008890 ORTHO05D004248 1.2e-09 66.6 92 40.2
Gohir.A05G153400 Gossypium hirsutum HOM05D005059 ORTHO05D004248 2.1e-09 65.9 92 46.7
Thecc.07G128100 Theobroma cacao HOM05D008890 ORTHO05D004248 2.1e-09 65.9 93 40.9
Actinidia18806 Actinidia chinensis HOM05D005059 ORTHO05D004248 2.7e-09 65.5 69 55.1
Glyma.08G118500 Glycine max HOM05D005059 ORTHO05D004248 2.7e-09 65.5 88 46.6
CAN.G411.50 Capsicum annuum HOM05D005059 ORTHO05D004248 3.5e-09 65.1 85 48.2
Ciclev10018148m.g Citrus clementina HOM05D005059 ORTHO05D004248 3.5e-09 65.1 92 47.8
Actinidia12585 Actinidia chinensis HOM05D005059 ORTHO05D004248 4.6e-09 64.7 71 53.5
Dinv12752 Davidia involucrata HOM05D005059 ORTHO05D004248 4.6e-09 64.7 57 57.9
Oeu060173.1 Olea europaea HOM05D005059 ORTHO05D004248 4.6e-09 64.7 96 44.8
Dinv32337 Davidia involucrata HOM05D005059 ORTHO05D004248 7.9e-09 63.9 88 45.5
MBI07_g00460_MAGBIO Magnolia biondii HOM05D005059 ORTHO05D004248 7.9e-09 63.9 61 49.2
Haze_06169 Corylus avellana HOM05D005059 ORTHO05D004248 1.0e-08 63.5 97 45.4
Gohir.D05G156000 Gossypium hirsutum HOM05D005059 ORTHO05D004248 1.0e-08 63.5 92 45.7
Gorai.009G160500 Gossypium raimondii HOM05D005059 ORTHO05D004248 1.0e-08 63.5 92 45.7
Oeu043118.1 Olea europaea HOM05D005059 ORTHO05D004248 1.0e-08 63.5 85 50.6
Oeu060178.1 Olea europaea HOM05D005059 ORTHO05D004248 1.0e-08 63.5 96 43.8
MSTRG.13233 Avicennia marina HOM05D005059 ORTHO05D004248 1.3e-08 63.2 88 46.6
Phvul.002G241108 Phaseolus vulgaris HOM05D005059 ORTHO05D004248 1.3e-08 63.2 91 47.3
Lsat_1_v5_gn_7_25601 Lactuca sativa HOM05D005059 ORTHO05D004248 1.8e-08 62.8 84 41.7
Glyma.05G161100 Glycine max HOM05D005059 ORTHO05D004248 2.3e-08 62.4 74 50.0
Oeu061362.1 Olea europaea HOM05D005059 ORTHO05D004248 2.3e-08 62.4 92 44.6
PGSC0003DMG400028485 Solanum tuberosum HOM05D005059 ORTHO05D004248 2.3e-08 62.4 95 41.1
Sopen02g021130 Solanum pennellii HOM05D005059 ORTHO05D004248 5.1e-08 61.2 83 41.0
TAR627G0061 Trochodendron aralioides HOM05D005059 ORTHO05D004248 5.1e-08 61.2 87 43.7
Sabra04G0040600 Salix brachista HOM05D005059 ORTHO05D004248 6.7e-08 60.8 52 57.7
CSS0038855 Camellia sinensis var. sinensis HOM05D005059 ORTHO05D004248 8.7e-08 60.5 89 40.4
Nitab4.5_0000788g0070 Nicotiana tabacum HOM05D005059 ORTHO05D004248 8.7e-08 60.5 91 41.8
Oeu040922.1 Olea europaea HOM05D005059 ORTHO05D004248 1.1e-07 60.1 85 48.2
Duzib213G0742 Durio zibethinus HOM05D008890 ORTHO05D004248 1.5e-07 59.7 95 45.3
Potri.004G061300 Populus trichocarpa HOM05D005059 ORTHO05D004248 1.9e-07 59.3 100 41.0
CARHR028610 Cardamine hirsuta HOM05D005059 ORTHO05D004248 3.3e-07 58.5 97 39.2
Prupe.4G067000 Prunus persica HOM05D005059 ORTHO05D004248 3.3e-07 58.5 97 40.2
TWI53G1149 Tripterygium wilfordii HOM05D005059 ORTHO05D004248 3.3e-07 58.5 98 41.8
FAN16G0464 Fragaria x ananassa HOM05D005059 ORTHO05D004248 4.3e-07 58.2 99 41.4
Thecc.07G128200 Theobroma cacao HOM05D008890 ORTHO05D004248 4.3e-07 58.2 93 39.8
CiPaw.10G061800 Carya illinoinensis HOM05D005059 ORTHO05D004248 5.7e-07 57.8 87 44.8
CDE02G4707 Ceratophyllum demersum HOM05D001096 ORTHO05D001629 5.7e-07 57.8 83 38.6
FAN21G0043 Fragaria x ananassa HOM05D005059 ORTHO05D004248 5.7e-07 57.8 99 41.4
FAN25G1124 Fragaria x ananassa HOM05D005059 ORTHO05D004248 5.7e-07 57.8 99 41.4
BcaB03g13892 Brassica carinata HOM05D005059 ORTHO05D004248 7.4e-07 57.4 97 40.2
Gorai.010G161500 Gossypium raimondii HOM05D005059 ORTHO05D004248 9.6e-07 57.0 93 45.2
SalBow7G3765 Salvia bowleyana HOM05D005059 ORTHO05D004248 9.6e-07 57.0 95 41.1
DCAR_005145 Daucus carota HOM05D005059 ORTHO05D004248 1.6e-06 56.2 49 49.0
FvH4_3g07300 Fragaria vesca HOM05D005059 ORTHO05D004248 1.6e-06 56.2 99 40.4
Duzib213G0473 Durio zibethinus HOM05D008890 ORTHO05D004248 2.1e-06 55.8 95 42.1
PGR042G3020 Punica granatum HOM05D005059 ORTHO05D004248 2.1e-06 55.8 95 41.1
SalBow8G0022 Salvia bowleyana HOM05D005059 ORTHO05D004248 2.1e-06 55.8 54 51.9
Cfa000656 Carpinus fangiana HOM05D005059 ORTHO05D004248 2.8e-06 55.5 99 42.4
FAN11G2282 Fragaria x ananassa HOM05D005059 ORTHO05D004248 2.8e-06 55.5 99 40.4
A07p10740 Brassica napus HOM05D005059 ORTHO05D004248 3.7e-06 55.1 97 38.1
BraA07t28869Z Brassica rapa HOM05D005059 ORTHO05D004248 3.7e-06 55.1 97 38.1
Migut.H01411 Erythranthe guttata HOM05D005059 ORTHO05D004248 3.7e-06 55.1 90 38.9
Gohir.D06G138900 Gossypium hirsutum HOM05D005059 ORTHO05D004248 3.7e-06 55.1 93 45.2
MD00G1009200 Malus domestica HOM05D005059 ORTHO05D004248 3.7e-06 55.1 95 40.0
MD00G1221100 Malus domestica HOM05D005059 ORTHO05D004248 3.7e-06 55.1 95 40.0
Manes.17G059300 Manihot esculenta HOM05D005059 ORTHO05D004248 3.7e-06 55.1 101 38.6
AT1G29290 Arabidopsis thaliana HOM05D005059 ORTHO05D004248 4.8e-06 54.7 95 38.9
Thhalv10009585m.g Eutrema salsugineum HOM05D005059 ORTHO05D004248 4.8e-06 54.7 98 37.8
Cc02_g15600 Coffea canephora HOM05D005059 ORTHO05D004248 6.2e-06 54.3 98 39.8
Gohir.A01G049200 Gossypium hirsutum HOM05D008890 ORTHO05D004248 8.2e-06 53.9 96 42.7
Lj4g0014521 Lotus japonicus HOM05D005059 ORTHO05D004248 8.2e-06 53.9 97 42.3
Manes.16G042800 Manihot esculenta HOM05D005059 ORTHO05D004248 8.2e-06 53.9 99 38.4


User provided reference genes

Program Settings