Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0004262 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 4.6e-102 374.8 218 100.0
CSS0028083 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 1.0e-98 363.6 218 97.7
Dinv25223 Davidia involucrata HOM05D004742 ORTHO05D005677 8.4e-64 247.7 226 69.0
Actinidia03372 Actinidia chinensis HOM05D004742 ORTHO05D005677 3.0e-53 212.6 235 61.3
Hma1.2p1_0303F.1_g119030 Hydrangea macrophylla HOM05D004742 ORTHO05D005677 5.6e-52 208.4 231 58.0
Actinidia14802 Actinidia chinensis HOM05D004742 ORTHO05D005677 1.3e-51 207.2 225 59.6
CANSAT21G2184 Cannabis sativa HOM05D004742 ORTHO05D005677 6.2e-51 204.9 237 52.7
VMungo1215G1913 Vigna mungo HOM05D004742 ORTHO05D005677 1.8e-50 203.4 234 53.8
CSS0042903 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 3.1e-50 202.6 225 55.1
TPR.G1023 Trifolium pratense HOM05D004742 ORTHO05D005677 5.8e-49 198.4 231 53.2
Thecc.03G226400 Theobroma cacao HOM05D004742 ORTHO05D005677 1.0e-48 197.6 229 56.8
Phvul.002G140700 Phaseolus vulgaris HOM05D004742 ORTHO05D005677 1.1e-47 194.1 234 52.1
Actinidia25968 Actinidia chinensis HOM05D004742 ORTHO05D005677 1.9e-47 193.4 241 56.4
MELO3C027362.2 Cucumis melo HOM05D004742 ORTHO05D005677 4.2e-47 192.2 229 56.8
Lsat_1_v5_gn_3_18001 Lactuca sativa HOM05D004742 ORTHO05D005677 4.2e-47 192.2 248 51.2
CiPaw.11G094200 Carya illinoinensis HOM05D004742 ORTHO05D005677 2.1e-46 189.9 234 59.0
Ca_06086_v3 Cicer arietinum L. HOM05D004742 ORTHO05D005677 2.7e-46 189.5 228 52.2
CsaV3_3G001600 Cucumis sativus L. HOM05D004742 ORTHO05D005677 2.7e-46 189.5 234 54.7
Duzib205G0563 Durio zibethinus HOM05D004742 ORTHO05D005677 3.5e-46 189.1 226 55.8
Nitab4.5_0010403g0010 Nicotiana tabacum HOM05D004742 ORTHO05D005677 3.5e-46 189.1 248 54.0
Cfa012451 Carpinus fangiana HOM05D004742 ORTHO05D005677 4.6e-46 188.7 230 56.1
PGSC0003DMG400017538 Solanum tuberosum HOM05D004742 ORTHO05D005677 6.0e-46 188.3 243 53.5
Nn1g00114 Nelumbo nucifera HOM05D004742 ORTHO05D005677 1.3e-45 187.2 225 53.3
CSS0044674 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 1.8e-45 186.8 212 59.9
COL.COLO4_17015 Corchorus olitorius HOM05D004742 ORTHO05D005677 1.8e-45 186.8 227 56.4
Lalb_Chr09g0325611 Lupinus albus HOM05D004742 ORTHO05D005677 1.8e-45 186.8 234 51.3
Glyma.09G205100 Glycine max HOM05D004742 ORTHO05D005677 2.3e-45 186.4 240 51.2
Solyc08g076870.1 Solanum lycopersicum HOM05D004742 ORTHO05D005677 5.1e-45 185.3 246 53.3
PGR031G2228 Punica granatum HOM05D004742 ORTHO05D005677 6.7e-45 184.9 249 53.8
Sopen08g025400 Solanum pennellii HOM05D004742 ORTHO05D005677 6.7e-45 184.9 248 53.2
ClCG10G001520 Citrullus lanatus HOM05D004742 ORTHO05D005677 1.5e-44 183.7 236 54.7
Medtr5g030210 Medicago truncatula HOM05D004742 ORTHO05D005677 1.5e-44 183.7 238 49.6
Medtr5g430370 Medicago truncatula HOM05D004742 ORTHO05D005677 1.5e-44 183.7 238 49.6
Lj3A410T15 Lonicera japonica HOM05D004742 ORTHO05D005677 1.9e-44 183.3 222 55.9
Manes.17G011300 Manihot esculenta HOM05D004742 ORTHO05D005677 1.9e-44 183.3 236 52.5
TWI60G1233 Tripterygium wilfordii HOM05D004742 ORTHO05D005677 1.9e-44 183.3 230 51.3
arahy.Tifrunner.gnm1.ann1.EZQY9P Arachis hypogaea HOM05D004742 ORTHO05D005677 2.5e-44 183.0 232 52.2
arahy.Tifrunner.gnm1.ann1.RMRK9P Arachis hypogaea HOM05D004742 ORTHO05D005677 2.5e-44 183.0 232 52.2
Gohir.A08G156100 Gossypium hirsutum HOM05D004742 ORTHO05D005677 3.3e-44 182.6 224 54.0
Glyma.01G017800 Glycine max HOM05D004742 ORTHO05D005677 9.6e-44 181.0 237 48.9
QL12p005003 Quercus lobata HOM05D004742 ORTHO05D005677 9.6e-44 181.0 227 54.2
CiPaw.12G064300 Carya illinoinensis HOM05D004742 ORTHO05D005677 2.4e-42 176.4 234 53.0
Oeu006253.1 Olea europaea HOM05D004742 ORTHO05D005677 3.1e-42 176.0 220 55.0
Duzib084G1225 Durio zibethinus HOM05D004742 ORTHO05D005677 4.1e-42 175.6 230 51.7
Duzib068G0638 Durio zibethinus HOM05D004742 ORTHO05D005677 5.3e-42 175.3 227 56.4
Rhsim11G0016100 Rhododendron simsii HOM05D004742 ORTHO05D005677 5.3e-42 175.3 168 67.3
Gohir.D08G176700 Gossypium hirsutum HOM05D004742 ORTHO05D005677 2.0e-41 173.3 226 52.2
Gorai.004G184600 Gossypium raimondii HOM05D004742 ORTHO05D005677 2.0e-41 173.3 226 52.2
Duzib084G0476 Durio zibethinus HOM05D004742 ORTHO05D005677 2.6e-41 172.9 230 51.7
Prupe.5G034500 Prunus persica HOM05D004742 ORTHO05D005677 3.4e-41 172.6 245 50.6
TAR374G0395 Trochodendron aralioides HOM05D004742 ORTHO05D005677 5.9e-41 171.8 224 50.0
HanXRQChr17g0536221 Helianthus annuus HOM05D004742 ORTHO05D005677 7.6e-41 171.4 238 52.1
Nitab4.5_0000529g0010 Nicotiana tabacum HOM05D004742 ORTHO05D005677 2.9e-40 169.5 250 51.2
Lj2g0023551 Lotus japonicus HOM05D004742 ORTHO05D005677 6.5e-40 168.3 234 50.4
Gohir.A09G199100 Gossypium hirsutum HOM05D004742 ORTHO05D005677 8.5e-40 167.9 230 46.1
Gohir.A11G030800 Gossypium hirsutum HOM05D004742 ORTHO05D005677 2.5e-39 166.4 228 51.8
Potri.001G141600 Populus trichocarpa HOM05D004742 ORTHO05D005677 5.5e-39 165.2 228 49.6
Haze_08216 Corylus avellana HOM05D004742 ORTHO05D005677 1.2e-38 164.1 230 53.0
Manes.15G188900 Manihot esculenta HOM05D004742 ORTHO05D005677 1.6e-38 163.7 237 47.7
Gorai.006G216900 Gossypium raimondii HOM05D004742 ORTHO05D005677 3.6e-38 162.5 230 51.3
Sabra03G0062000 Salix brachista HOM05D004742 ORTHO05D001134 4.6e-38 162.2 210 44.3
Psat2g136480 Pisum sativum HOM05D004742 ORTHO05D005677 6.1e-38 161.8 234 47.0
Gorai.007G032300 Gossypium raimondii HOM05D004742 ORTHO05D005677 1.0e-37 161.0 224 45.5
Potri.003G092700 Populus trichocarpa HOM05D004742 ORTHO05D005677 1.0e-37 161.0 227 48.5
Rhsim07G0128300 Rhododendron simsii HOM05D004742 ORTHO05D005677 1.0e-37 161.0 227 46.3
Ah.12g055130 Amaranthus hybridus HOM05D004742 ORTHO05D005677 2.3e-37 159.8 224 46.4
EL10Ac5g12098 Beta vulgaris HOM05D004742 ORTHO05D005677 2.3e-37 159.8 224 48.7
Gohir.D11G029500 Gossypium hirsutum HOM05D004742 ORTHO05D005677 2.3e-37 159.8 224 49.1
FAN08G0406 Fragaria x ananassa HOM05D004742 ORTHO05D005677 3.0e-37 159.5 242 43.4
MD06G1035300 Malus domestica HOM05D004742 ORTHO05D005677 3.0e-37 159.5 248 47.2
FAN04G2756 Fragaria x ananassa HOM05D004742 ORTHO05D005677 6.7e-37 158.3 241 41.9
MD16G1273500 Malus domestica HOM05D004742 ORTHO05D005677 6.7e-37 158.3 248 46.8
FAN13G2654 Fragaria x ananassa HOM05D004742 ORTHO05D005677 1.1e-36 157.5 241 42.3
FvH4_5g22200 Fragaria vesca HOM05D004742 ORTHO05D005677 1.5e-36 157.1 242 43.0
Gohir.D09G193400 Gossypium hirsutum HOM05D004742 ORTHO05D005677 1.5e-36 157.1 230 50.0
Hma1.2p1_0574F.1_g181490 Hydrangea macrophylla HOM05D004742 ORTHO05D005677 3.3e-36 156.0 266 42.5
FAN18G2180 Fragaria x ananassa HOM05D004742 ORTHO05D005677 5.7e-36 155.2 241 44.4
TAR636G0473 Trochodendron aralioides HOM05D004742 ORTHO05D005677 7.4e-36 154.8 224 46.0
CSS0009789 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 1.6e-35 153.7 97 79.4
SalBow6G3311 Salvia bowleyana HOM05D004742 ORTHO05D005677 2.2e-35 153.3 235 43.4
RcHm_v2.0_Chr7g0209881 Rosa chinensis HOM05D004742 ORTHO05D005677 6.3e-35 151.8 244 45.5
Atru.chr6.1683 Acer truncatum HOM05D004742 ORTHO05D005677 1.4e-34 150.6 221 46.6
Ciclev10016629m.g Citrus clementina HOM05D004742 ORTHO05D005677 3.1e-34 149.4 232 49.6
TAR629G2541 Trochodendron aralioides HOM05D004742 ORTHO05D005677 6.9e-34 148.3 153 57.5
Migut.E00942 Erythranthe guttata HOM05D004742 ORTHO05D005677 7.7e-33 144.8 230 41.3
MSTRG.12162 Avicennia marina HOM05D004742 ORTHO05D005677 6.5e-32 141.7 228 39.0
HanXRQChr06g0167541 Helianthus annuus HOM05D004742 ORTHO05D005677 1.1e-31 141.0 230 39.6
DCAR_032208 Daucus carota HOM05D004742 ORTHO05D005677 4.2e-31 139.0 218 41.3
Lsat_1_v5_gn_6_421 Lactuca sativa HOM05D004742 ORTHO05D005677 7.2e-31 138.3 244 41.8
THA.LOC104814447 Tarenaya hassleriana HOM05D004742 ORTHO05D005677 1.2e-30 137.5 229 37.6
Lalb_Chr16g0381321 Lupinus albus HOM05D004742 ORTHO05D005677 2.1e-30 136.7 216 46.8
Cc08_g02870 Coffea canephora HOM05D004742 ORTHO05D005677 3.0e-29 132.9 260 45.8
Eucgr.D02205 Eucalyptus grandis HOM05D004742 ORTHO05D005677 5.1e-29 132.1 237 40.1
THA.LOC104812742 Tarenaya hassleriana HOM05D004742 ORTHO05D005677 8.8e-29 131.3 227 40.1
Sed0001883 Sechium edule HOM05D004742 ORTHO05D005677 1.5e-28 130.6 237 46.8
DCAR_008263 Daucus carota HOM05D004742 ORTHO05D005677 4.8e-27 125.6 249 41.0
Aa31LG9G15210 Aethionema arabicum HOM05D004742 ORTHO05D005677 5.3e-26 122.1 229 37.1
Nitab4.5_0008566g0010 Nicotiana tabacum HOM05D004742 ORTHO05D005677 5.3e-26 122.1 220 39.5
TAR375G0192 Trochodendron aralioides HOM05D004742 ORTHO05D005677 5.3e-26 122.1 149 49.7
EL10Ac5g12097 Beta vulgaris HOM05D004742 ORTHO05D005677 9.1e-26 121.3 216 42.1
SGA_v2.0_scaffold6G03142 Striga asiatica HOM05D004742 ORTHO05D005677 7.7e-25 118.2 222 38.3
Thhalv10008795m.g Eutrema salsugineum HOM05D004742 ORTHO05D005677 2.2e-24 116.7 226 37.2
CARHR032080 Cardamine hirsuta HOM05D004742 ORTHO05D005677 2.9e-24 116.3 226 38.9
Aqoxy3G02336 Aquilegia oxysepala HOM05D004742 ORTHO05D005677 3.8e-24 115.9 254 43.7
Sp4g17420 Schrenkiella parvula HOM05D004742 ORTHO05D005677 6.5e-24 115.2 236 36.4
Thhalv10017262m.g Eutrema salsugineum HOM05D004742 ORTHO05D005677 1.6e-22 110.5 226 37.2
Aa31LG2G13280 Aethionema arabicum HOM05D004742 ORTHO05D005677 2.7e-22 109.8 227 42.3
AT1G32690 Arabidopsis thaliana HOM05D004742 ORTHO05D005677 2.7e-22 109.8 223 39.5
SGA_v2.0_scaffold20G09271 Striga asiatica HOM05D004742 ORTHO05D005677 6.1e-22 108.6 227 36.6
AL1G46920 Arabidopsis lyrata HOM05D004742 ORTHO05D005677 1.4e-21 107.5 223 38.6
DCAR_004297 Daucus carota HOM05D004742 ORTHO05D005677 1.4e-21 107.5 243 34.2
Carub.0001s3103 Capsella rubella HOM05D004742 ORTHO05D005677 2.3e-21 106.7 220 42.7
HanXRQChr12g0360911 Helianthus annuus HOM05D004742 ORTHO05D005677 3.0e-21 106.3 235 32.8
BcaB03g13715 Brassica carinata HOM05D004742 ORTHO05D005677 8.8e-21 104.8 219 38.4
BcaC02g11593 Brassica carinata HOM05D004742 ORTHO05D005677 8.8e-21 104.8 219 37.9
A05p24650 Brassica napus HOM05D004742 ORTHO05D005677 8.8e-21 104.8 219 41.1
BraA05t21351Z Brassica rapa HOM05D004742 ORTHO05D005677 8.8e-21 104.8 219 41.1
A05p10550 Brassica napus HOM05D004742 ORTHO05D005677 1.1e-20 104.4 211 38.4
BraA05t19993Z Brassica rapa HOM05D004742 ORTHO05D005677 1.1e-20 104.4 211 38.4
Carub.0004s1689 Capsella rubella HOM05D004742 ORTHO05D005677 2.0e-20 103.6 220 35.5
C04p13600 Brassica napus HOM05D004742 ORTHO05D005677 1.3e-19 100.9 214 36.0
AL4G31210 Arabidopsis lyrata HOM05D004742 ORTHO05D005677 1.7e-19 100.5 217 35.9
CARHR129360 Cardamine hirsuta HOM05D004742 ORTHO05D005677 2.2e-19 100.1 220 35.5
Nitab4.5_0006434g0030 Nicotiana tabacum HOM05D004742 ORTHO05D005677 2.8e-19 99.8 208 34.6
BolC4t22951H Brassica oleracea HOM05D004742 ORTHO05D005677 4.8e-19 99.0 213 35.7
Sp1g28270 Schrenkiella parvula HOM05D004742 ORTHO05D005677 8.2e-19 98.2 226 33.2
HPP92_014611 Vanilla planifolia HOM05D004742 ORTHO05D005677 8.2e-19 98.2 150 44.7
HPP92_020967 Vanilla planifolia HOM05D004742 ORTHO05D005677 8.2e-19 98.2 129 48.1
BolC3t19547H Brassica oleracea HOM05D004742 ORTHO05D005677 5.3e-18 95.5 227 32.6
AT2G35200 Arabidopsis thaliana HOM05D004742 ORTHO05D005677 7.0e-18 95.1 219 34.7
AUR62018706 Chenopodium quinoa HOM05D004742 ORTHO05D005677 9.1e-18 94.7 223 35.9
BcaC01g01725 Brassica carinata HOM05D004742 ORTHO05D005677 1.2e-17 94.4 225 32.9
C03p72460 Brassica napus HOM05D004742 ORTHO05D005677 1.2e-17 94.4 225 32.9
BcaC05g27832 Brassica carinata HOM05D004742 ORTHO05D005677 1.6e-17 94.0 222 35.1
C05p38300 Brassica napus HOM05D004742 ORTHO05D005677 1.6e-17 94.0 222 35.1
BolC5t32562H Brassica oleracea HOM05D004742 ORTHO05D005677 1.6e-17 94.0 222 35.1
MBI04_g25303_MAGBIO Magnolia biondii HOM05D004742 ORTHO05D005677 4.5e-17 92.4 208 35.6
Lj8P301T9 Lonicera japonica HOM05D004742 ORTHO05D005677 5.9e-17 92.0 135 44.4
CDE06G1944 Ceratophyllum demersum HOM05D003296 ORTHO05D003720 8.5e-16 88.2 145 40.0
PSO210G7694 Papaver somniferum HOM05D004742 ORTHO05D005677 8.5e-16 88.2 248 33.1
Solyc08g005090.2 Solanum lycopersicum HOM05D004742 ORTHO05D005677 5.5e-15 85.5 121 39.7
Sopen08g001110 Solanum pennellii HOM05D004742 ORTHO05D005677 5.5e-15 85.5 121 41.3
MBI04_g46668_MAGBIO Magnolia biondii HOM05D004742 ORTHO05D005677 1.2e-14 84.3 198 34.3
Peaxi162Scf00045g00023 Petunia axillaris HOM05D004742 ORTHO05D005677 2.1e-14 83.6 149 36.2
PGSC0003DMG400017843 Solanum tuberosum HOM05D004742 ORTHO05D005677 2.1e-14 83.6 123 40.7
ECA233G6051 Erigeron canadensis HOM05D007880 ORTHO05D003386 8.0e-14 81.6 126 46.8
CDE11G0293 Ceratophyllum demersum HOM05D004742 ORTHO05D005677 8.2e-11 71.6 205 27.3
Zm00001eb251250 Zea mays HOM05D004742 ORTHO05D005677 8.2e-11 71.6 118 43.2
ATR0665G540 Amborella trichopoda HOM05D004742 ORTHO05D005677 1.1e-10 71.2 242 33.5
Os02g0693000 Oryza sativa ssp. japonica HOM05D004742 ORTHO05D005677 8.5e-08 61.6 119 38.7
CDE03G0209 Ceratophyllum demersum HOM05D004742 ORTHO05D005677 5.5e-07 58.9 150 33.3
CSS0045744 Camellia sinensis var. sinensis HOM05D004568 ORTHO05D005343 2.7e-06 56.6 150 30.7
Os04g0591300 Oryza sativa ssp. japonica HOM05D004742 ORTHO05D005677 2.7e-06 56.6 39 56.4


User provided reference genes

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