Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0004194 Camellia sinensis var. sinensis HOM05D007452 ORTHO05D009375 9.6e-89 330.1 163 100.0
vmacro06236 Vaccinium macrocarpon HOM05D007452 ORTHO05D009375 1.6e-35 153.3 120 66.7
Rhsim03G0239200 Rhododendron simsii HOM05D007452 ORTHO05D009375 6.8e-34 147.9 116 67.2
Cc06_g10100 Coffea canephora HOM05D007452 ORTHO05D009375 2.6e-33 146.0 123 61.0
PGSC0003DMG400023982 Solanum tuberosum HOM05D007452 ORTHO05D009375 9.8e-33 144.1 124 62.1
Migut.J01126 Erythranthe guttata HOM05D007452 ORTHO05D009375 1.3e-32 143.7 124 62.1
Nitab4.5_0002165g0070 Nicotiana tabacum HOM05D007452 ORTHO05D009375 2.8e-32 142.5 124 60.5
Nitab4.5_0003331g0020 Nicotiana tabacum HOM05D007452 ORTHO05D009375 3.7e-32 142.1 124 60.5
SalBow6G2888 Salvia bowleyana HOM05D007452 ORTHO05D009375 8.3e-32 141.0 124 61.3
CAN.G645.18 Capsicum annuum HOM05D007452 ORTHO05D009375 1.8e-31 139.8 125 58.4
Dinv41642 Davidia involucrata HOM05D007452 ORTHO05D009375 3.1e-31 139.0 126 59.5
Solyc11g006870.1 Solanum lycopersicum HOM05D007452 ORTHO05D009375 3.1e-31 139.0 124 59.7
Sopen11g002770 Solanum pennellii HOM05D007452 ORTHO05D009375 3.1e-31 139.0 124 59.7
Nitab4.5_0000066g0140 Nicotiana tabacum HOM05D007452 ORTHO05D009375 4.1e-31 138.7 124 58.1
MSTRG.19570 Avicennia marina HOM05D007452 ORTHO05D009375 7.0e-31 137.9 128 58.6
QL02p043240 Quercus lobata HOM05D007452 ORTHO05D009375 7.0e-31 137.9 124 60.5
QL02p044487 Quercus lobata HOM05D007452 ORTHO05D009375 7.0e-31 137.9 124 60.5
SGA_v2.0_scaffold10G05148 Striga asiatica HOM05D007452 ORTHO05D009375 9.1e-31 137.5 124 60.5
GSVIVG01015344001 Vitis vinifera HOM05D007452 ORTHO05D009375 5.9e-30 134.8 128 60.2
FAN26G2311 Fragaria x ananassa HOM05D007452 ORTHO05D009375 1.0e-29 134.0 126 61.9
FAN28G0080 Fragaria x ananassa HOM05D007452 ORTHO05D009375 1.3e-29 133.7 126 61.9
FvH4_1g05720 Fragaria vesca HOM05D007452 ORTHO05D009375 1.7e-29 133.3 126 61.1
FAN26G0145 Fragaria x ananassa HOM05D007452 ORTHO05D009375 1.7e-29 133.3 126 61.9
TWI34G0936 Tripterygium wilfordii HOM05D007452 ORTHO05D009375 1.7e-29 133.3 129 57.4
Lsat_1_v5_gn_5_147400 Lactuca sativa HOM05D007452 ORTHO05D009375 2.9e-29 132.5 122 62.3
unitig_899.g15033 Utricularia gibba HOM05D007452 ORTHO05D009375 5.0e-29 131.7 124 56.5
MD15G1192300 Malus domestica HOM05D007452 ORTHO05D009375 6.6e-29 131.3 127 57.5
Oeu002255.1 Olea europaea HOM05D007452 ORTHO05D009375 6.6e-29 131.3 125 56.8
Prupe.7G224900 Prunus persica HOM05D007452 ORTHO05D009375 6.6e-29 131.3 130 56.9
FAN19G0597 Fragaria x ananassa HOM05D007452 ORTHO05D009375 8.6e-29 131.0 126 60.3
MD02G1057900 Malus domestica HOM05D007452 ORTHO05D009375 1.1e-28 130.6 130 56.2
AUR62021449 Chenopodium quinoa HOM05D007452 ORTHO05D009375 1.5e-28 130.2 128 57.0
Sopen08g027980 Solanum pennellii HOM05D007452 ORTHO05D009375 1.5e-28 130.2 117 57.3
HanXRQChr10g0318511 Helianthus annuus HOM05D007452 ORTHO05D009375 1.9e-28 129.8 124 60.5
PGR102G0901 Punica granatum HOM05D007452 ORTHO05D009375 1.9e-28 129.8 127 55.1
MELO3C024705.2 Cucumis melo HOM05D007452 ORTHO05D009375 2.5e-28 129.4 130 55.4
COL.COLO4_34802 Corchorus olitorius HOM05D007452 ORTHO05D009375 1.2e-27 127.1 128 53.9
DCAR_012055 Daucus carota HOM05D007452 ORTHO05D009375 1.2e-27 127.1 124 61.3
Potri.018G084400 Populus trichocarpa HOM05D007452 ORTHO05D009375 1.2e-27 127.1 130 56.2
RcHm_v2.0_Chr2g0091331 Rosa chinensis HOM05D007452 ORTHO05D009375 1.2e-27 127.1 125 60.8
Thecc.09G105200 Theobroma cacao HOM05D007452 ORTHO05D009375 1.6e-27 126.7 128 54.7
Peaxi162Scf00539g00066 Petunia axillaris HOM05D007452 ORTHO05D009375 2.8e-27 125.9 138 50.0
Sabra18G0072700 Salix brachista HOM05D007452 ORTHO05D009375 2.8e-27 125.9 129 56.6
Aqoxy7G01521 Aquilegia oxysepala HOM05D007452 ORTHO05D009375 3.6e-27 125.6 124 56.5
PSO210G5570 Papaver somniferum HOM05D007452 ORTHO05D009375 3.6e-27 125.6 125 53.6
Gohir.D06G063500 Gossypium hirsutum HOM05D007452 ORTHO05D009375 4.7e-27 125.2 134 52.2
Sed0023851 Sechium edule HOM05D007452 ORTHO05D009375 6.1e-27 124.8 130 54.6
Ciclev10009852m.g Citrus clementina HOM05D007452 ORTHO05D009375 1.0e-26 124.0 120 55.0
CiPaw.04G161200 Carya illinoinensis HOM05D007452 ORTHO05D009375 1.4e-26 123.6 131 54.2
ClCG06G008870 Citrullus lanatus HOM05D007452 ORTHO05D009375 2.3e-26 122.9 115 59.1
Gorai.010G074100 Gossypium raimondii HOM05D007452 ORTHO05D009375 2.3e-26 122.9 130 52.3
Duzib187G0798 Durio zibethinus HOM05D007452 ORTHO05D009375 3.0e-26 122.5 122 54.9
Haze_25788 Corylus avellana HOM05D007452 ORTHO05D009375 4.0e-26 122.1 128 53.1
Manes.03G024500 Manihot esculenta HOM05D007452 ORTHO05D009375 4.0e-26 122.1 121 54.5
A02p05660 Brassica napus HOM05D007452 ORTHO05D009375 5.2e-26 121.7 136 50.7
TAR636G3481 Trochodendron aralioides HOM05D007452 ORTHO05D009375 5.2e-26 121.7 124 55.6
BraA02t05518Z Brassica rapa HOM05D007452 ORTHO05D009375 6.8e-26 121.3 135 49.6
Atru.chr7.1416 Acer truncatum HOM05D007452 ORTHO05D009375 1.2e-25 120.6 137 49.6
Eucgr.C01281 Eucalyptus grandis HOM05D007452 ORTHO05D009375 1.5e-25 120.2 125 53.6
Gohir.A06G065000 Gossypium hirsutum HOM05D007452 ORTHO05D009375 1.5e-25 120.2 130 51.5
Nn2g11650 Nelumbo nucifera HOM05D007452 ORTHO05D009375 1.5e-25 120.2 125 54.4
BcaC03g13689 Brassica carinata HOM05D007452 ORTHO05D009375 2.6e-25 119.4 131 51.1
BNapus_Darmor_BZH_scaffold_38p02290 Brassica napus HOM05D007452 ORTHO05D009375 2.6e-25 119.4 131 51.1
Ah.09g230860 Amaranthus hybridus HOM05D007452 ORTHO05D009375 7.5e-25 117.9 126 54.8
AT5G19570 Arabidopsis thaliana HOM05D007452 ORTHO05D009375 9.8e-25 117.5 131 50.4
HPP92_008140 Vanilla planifolia HOM05D007452 ORTHO05D009375 1.3e-24 117.1 124 50.8
Thhalv10014912m.g Eutrema salsugineum HOM05D007452 ORTHO05D009375 1.7e-24 116.7 132 50.8
BcaB05g23392 Brassica carinata HOM05D007452 ORTHO05D009375 2.2e-24 116.3 135 48.1
CDE02G1573 Ceratophyllum demersum HOM05D007452 ORTHO05D009375 2.2e-24 116.3 131 49.6
Cfa003221 Carpinus fangiana HOM05D007452 ORTHO05D009375 2.8e-24 115.9 124 51.6
Glyma.08G035800 Glycine max HOM05D007452 ORTHO05D009375 2.8e-24 115.9 122 53.3
CARHR193330 Cardamine hirsuta HOM05D007452 ORTHO05D009375 3.7e-24 115.5 130 50.8
Lalb_Chr05g0223071 Lupinus albus HOM05D007452 ORTHO05D009375 6.3e-24 114.8 120 51.7
BolC2t06971H Brassica oleracea HOM05D007452 ORTHO05D009375 1.4e-23 113.6 133 48.9
Ca_17318_v3 Cicer arietinum L. HOM05D007452 ORTHO05D009375 5.4e-23 111.7 125 50.4
AL6G31080 Arabidopsis lyrata HOM05D007452 ORTHO05D009375 7.0e-23 111.3 132 47.7
Phvul.002G311100 Phaseolus vulgaris HOM05D007452 ORTHO05D009375 1.2e-22 110.5 122 50.8
Aa31LG5G13720 Aethionema arabicum HOM05D007452 ORTHO05D009375 1.6e-22 110.2 117 48.7
Psat7g014560 Pisum sativum HOM05D007452 ORTHO05D009375 3.5e-22 109.0 125 48.8
HanXRQChr03g0087651 Helianthus annuus HOM05D007452 ORTHO05D009375 7.8e-22 107.8 120 55.0
Glyma.05G228800 Glycine max HOM05D007452 ORTHO05D009375 1.0e-21 107.5 135 45.9
Medtr8g102920 Medicago truncatula HOM05D007452 ORTHO05D009375 1.0e-21 107.5 123 49.6
THA.LOC104799068 Tarenaya hassleriana HOM05D007452 ORTHO05D009375 1.7e-21 106.7 129 48.8
THA.LOC104808980 Tarenaya hassleriana HOM05D007452 ORTHO05D009375 1.7e-21 106.7 129 48.8
MBI04_g14927_MAGBIO Magnolia biondii HOM05D007452 ORTHO05D009375 2.9e-21 105.9 114 50.9
EL10Ac8g18425 Beta vulgaris HOM05D007452 ORTHO05D009375 8.6e-21 104.4 125 48.8
ATR0315G055 Amborella trichopoda HOM05D007452 ORTHO05D009375 2.5e-20 102.8 125 51.2
Carub.0006s1792 Capsella rubella HOM05D007452 ORTHO05D009375 4.3e-20 102.1 132 44.7
Os05g0188300 Oryza sativa ssp. japonica HOM05D007452 ORTHO05D009375 5.6e-20 101.7 123 48.0
Sc08g0007740 Simmondsia chinensis HOM05D007452 ORTHO05D009375 5.2e-18 95.1 126 46.8
CiPaw.08G085300 Carya illinoinensis HOM05D007452 ORTHO05D009375 5.8e-17 91.7 116 48.3
Zm00001eb089090 Zea mays HOM05D007452 ORTHO05D009375 7.5e-17 91.3 120 45.0
CsaV3_1G020810 Cucumis sativus L. HOM05D007452 ORTHO05D009375 3.7e-16 89.0 100 51.0
SEGI_20837 Sequoiadendron giganteum HOM05D007452 ORTHO05D009375 1.0e-13 80.9 125 41.6
HanXRQChr02g0047631 Helianthus annuus HOM05D007452 ORTHO05D009375 1.1e-12 77.4 102 50.0
Cfa001992 Carpinus fangiana HOM05D007452 ORTHO05D009375 6.2e-11 71.6 95 43.2
Pp3c5_13600 Physcomitrium patens HOM05D007452 ORTHO05D009375 1.4e-10 70.5 121 38.0
SMO119G0523 Selaginella moellendorffii HOM05D007452 ORTHO05D009375 1.8e-10 70.1 117 36.8
Mapoly0005s0019 Marchantia polymorpha HOM05D007452 ORTHO05D009375 8.3e-08 61.2 122 33.6
AagrBONN_evm.TU.Sc2ySwM_117.3226 Anthoceros agrestis HOM05D007452 ORTHO05D009375 9.2e-07 57.8 141 32.6


User provided reference genes

Program Settings