Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0004191 Camellia sinensis var. sinensis HOM05D006691 ORTHO05D007620 1.2e-33 146.0 77 100.0
CSS0036321 Camellia sinensis var. sinensis HOM05D006691 ORTHO05D007620 7.6e-20 100.1 87 69.0
CSS0048821 Camellia sinensis var. sinensis HOM05D006691 ORTHO05D007620 5.1e-16 87.4 97 58.8
Actinidia00546 Actinidia chinensis HOM05D006691 ORTHO05D007620 4.1e-13 77.8 80 57.5
Ciclev10030122m.g Citrus clementina HOM05D006691 ORTHO05D007620 5.3e-13 77.4 90 53.3
CAN.G1544.5 Capsicum annuum HOM05D006691 ORTHO05D007620 9.1e-13 76.6 84 54.8
Potri.009G119900 Populus trichocarpa HOM05D006691 ORTHO05D007620 9.1e-13 76.6 95 49.5
TWI31G1476 Tripterygium wilfordii HOM05D006691 ORTHO05D007620 9.1e-13 76.6 89 50.6
GSVIVG01023821001 Vitis vinifera HOM05D006691 ORTHO05D007620 1.5e-12 75.9 96 50.0
Nitab4.5_0007454g0010 Nicotiana tabacum HOM05D006691 ORTHO05D007620 2.0e-12 75.5 90 52.2
Solyc01g109895.1 Solanum lycopersicum HOM05D006691 ORTHO05D007620 2.0e-12 75.5 83 53.0
Nitab4.5_0003234g0120 Nicotiana tabacum HOM05D006691 ORTHO05D007620 2.6e-12 75.1 89 51.7
QL11p045203 Quercus lobata HOM05D006691 ORTHO05D007620 4.5e-12 74.3 93 51.6
TAR628G0615 Trochodendron aralioides HOM05D006691 ORTHO05D007620 4.5e-12 74.3 92 48.9
Nitab4.5_0013456g0010 Nicotiana tabacum HOM05D006691 ORTHO05D007620 1.0e-11 73.2 93 51.6
Sopen01g052090 Solanum pennellii HOM05D006691 ORTHO05D007620 1.0e-11 73.2 81 53.1
Peaxi162Scf00016g00429 Petunia axillaris HOM05D006691 ORTHO05D007620 1.3e-11 72.8 96 47.9
Dinv42040 Davidia involucrata HOM05D006691 ORTHO05D007620 2.2e-11 72.0 93 48.4
Thecc.02G080700 Theobroma cacao HOM05D006691 ORTHO05D007620 2.2e-11 72.0 85 54.1
Dinv23490 Davidia involucrata HOM05D006691 ORTHO05D007620 2.9e-11 71.6 93 51.6
PGSC0003DMG400030948 Solanum tuberosum HOM05D006691 ORTHO05D007620 2.9e-11 71.6 82 53.7
TWI79G1416 Tripterygium wilfordii HOM05D006691 ORTHO05D007620 2.9e-11 71.6 90 47.8
Prupe.8G091200 Prunus persica HOM05D006691 ORTHO05D007620 5.0e-11 70.9 93 48.4
Nitab4.5_0001413g0050 Nicotiana tabacum HOM05D006691 ORTHO05D007620 8.5e-11 70.1 94 48.9
TPR.G1848 Trifolium pratense HOM05D006691 ORTHO05D007620 8.5e-11 70.1 92 51.1
Phvul.011G210100 Phaseolus vulgaris HOM05D006691 ORTHO05D007620 1.1e-10 69.7 90 47.8
Lalb_Chr01g0007961 Lupinus albus HOM05D006691 ORTHO05D007620 1.4e-10 69.3 92 47.8
MD05G1061400 Malus domestica HOM05D006691 ORTHO05D007620 1.4e-10 69.3 93 47.3
Eucgr.I01291 Eucalyptus grandis HOM05D006691 ORTHO05D007620 1.9e-10 68.9 94 45.7
Glyma.13G201100 Glycine max HOM05D006691 ORTHO05D007620 1.9e-10 68.9 91 48.4
Medtr8g037800 Medicago truncatula HOM05D006691 ORTHO05D007620 1.9e-10 68.9 92 48.9
MD10G1069300 Malus domestica HOM05D006691 ORTHO05D007620 2.5e-10 68.6 93 48.4
Psat4g192840 Pisum sativum HOM05D006691 ORTHO05D007620 2.5e-10 68.6 89 49.4
Lj1g0004010 Lotus japonicus HOM05D006691 ORTHO05D007620 3.2e-10 68.2 90 47.8
Cc00_g15110 Coffea canephora HOM05D006691 ORTHO05D007620 4.2e-10 67.8 94 47.9
COL.COLO4_25981 Corchorus olitorius HOM05D006691 ORTHO05D007620 4.2e-10 67.8 88 51.1
Manes.11G091700 Manihot esculenta HOM05D006691 ORTHO05D007620 4.2e-10 67.8 90 50.0
RcHm_v2.0_Chr6g0265861 Rosa chinensis HOM05D006691 ORTHO05D007620 4.2e-10 67.8 95 48.4
Migut.B00211 Erythranthe guttata HOM05D006691 ORTHO05D007620 5.5e-10 67.4 87 44.8
FAN15G0999 Fragaria x ananassa HOM05D006691 ORTHO05D007620 5.5e-10 67.4 95 48.4
CANSAT11G0932 Cannabis sativa HOM05D006691 ORTHO05D007620 7.2e-10 67.0 89 43.8
Hma1.2p1_0066F.1_g036140 Hydrangea macrophylla HOM05D006691 ORTHO05D007620 1.6e-09 65.9 89 52.8
Manes.04G087299 Manihot esculenta HOM05D006691 ORTHO05D007620 2.1e-09 65.5 91 44.0
FAN20G2766 Fragaria x ananassa HOM05D006691 ORTHO05D007620 2.7e-09 65.1 95 47.4
FAN27G2049 Fragaria x ananassa HOM05D006691 ORTHO05D007620 2.7e-09 65.1 95 48.4
CiPaw.05G069300 Carya illinoinensis HOM05D006691 ORTHO05D007620 4.6e-09 64.3 36 77.8
CiPaw.05G069400 Carya illinoinensis HOM05D006691 ORTHO05D007620 4.6e-09 64.3 36 77.8
Gohir.A03G196700 Gossypium hirsutum HOM05D006691 ORTHO05D007620 4.6e-09 64.3 81 50.6
Lj3g0013236 Lotus japonicus HOM05D006691 ORTHO05D007620 4.6e-09 64.3 88 48.9
Gorai.005G245800 Gossypium raimondii HOM05D006691 ORTHO05D007620 6.1e-09 63.9 81 50.6
Duzib248G1522 Durio zibethinus HOM05D006691 ORTHO05D007620 1.4e-08 62.8 83 49.4
ClCG11G004170 Citrullus lanatus HOM05D006691 ORTHO05D007620 1.8e-08 62.4 71 52.1
CiPaw.05G069100 Carya illinoinensis HOM05D006691 ORTHO05D007620 2.3e-08 62.0 36 77.8
FvH4_2g09570 Fragaria vesca HOM05D006691 ORTHO05D007620 2.3e-08 62.0 95 46.3
FAN24G2625 Fragaria x ananassa HOM05D006691 ORTHO05D007620 2.3e-08 62.0 95 46.3
Peaxi162Scf00684g00234 Petunia axillaris HOM05D006691 ORTHO05D007620 2.3e-08 62.0 82 52.4
arahy.Tifrunner.gnm1.ann1.43WB82 Arachis hypogaea HOM05D006691 ORTHO05D007620 3.0e-08 61.6 87 48.3
MELO3C023320.2 Cucumis melo HOM05D006691 ORTHO05D007620 3.0e-08 61.6 83 43.4
Gohir.D02G217900 Gossypium hirsutum HOM05D006691 ORTHO05D007620 3.0e-08 61.6 81 49.4
Gorai.013G035000 Gossypium raimondii HOM05D006691 ORTHO05D007620 3.9e-08 61.2 82 43.9
Gohir.A13G032600 Gossypium hirsutum HOM05D006691 ORTHO05D007620 6.7e-08 60.5 79 44.3
AL3G52540 Arabidopsis lyrata HOM05D006691 ORTHO05D007620 1.1e-07 59.7 84 42.9
CiPaw.06G132900 Carya illinoinensis HOM05D006691 ORTHO05D007620 1.1e-07 59.7 93 45.2
Gohir.D13G030800 Gossypium hirsutum HOM05D006691 ORTHO05D007620 1.1e-07 59.7 82 42.7
SalBow6G5689 Salvia bowleyana HOM05D006691 ORTHO05D007620 1.1e-07 59.7 91 42.9
PSO675G5127 Papaver somniferum HOM05D006691 ORTHO05D007620 1.5e-07 59.3 33 78.8
Aqoxy5G01556 Aquilegia oxysepala HOM05D006691 ORTHO05D007620 2.0e-07 58.9 93 45.2
AT2G16385 Arabidopsis thaliana HOM05D006691 ORTHO05D007620 2.0e-07 58.9 82 43.9
Glyma.12G235600 Glycine max HOM05D006691 ORTHO05D007620 2.0e-07 58.9 33 78.8
PSO591G0314 Papaver somniferum HOM05D006691 ORTHO05D007620 2.0e-07 58.9 101 45.5
CsaV3_2G015000 Cucumis sativus L. HOM05D006691 ORTHO05D007620 2.6e-07 58.5 83 44.6
THA.LOC104819621 Tarenaya hassleriana HOM05D006691 ORTHO05D007620 2.6e-07 58.5 89 39.3
Duzib132G0715 Durio zibethinus HOM05D006691 ORTHO05D007620 4.4e-07 57.8 84 45.2
Sed0023451 Sechium edule HOM05D006691 ORTHO05D007620 9.7e-07 56.6 97 42.3
HanXRQChr04g0127791 Helianthus annuus HOM05D006691 ORTHO05D007620 1.3e-06 56.2 93 41.9
Lsat_1_v5_gn_7_91560 Lactuca sativa HOM05D006691 ORTHO05D007620 1.3e-06 56.2 33 75.8
Hund06253 Selenicereus undatus HOM05D006691 ORTHO05D007620 1.3e-06 56.2 93 38.7
arahy.Tifrunner.gnm1.ann1.D742FH Arachis hypogaea HOM05D006691 ORTHO05D007620 1.7e-06 55.8 34 70.6
MBI10_g00752_MAGBIO Magnolia biondii HOM05D006691 ORTHO05D007620 1.7e-06 55.8 33 75.8
DCAR_001560 Daucus carota HOM05D006691 ORTHO05D007620 3.7e-06 54.7 86 45.3
Carub.0007s0568 Capsella rubella HOM05D006691 ORTHO05D007620 4.8e-06 54.3 83 39.8
Rhsim05G0071400 Rhododendron simsii HOM05D006691 ORTHO05D007620 6.3e-06 53.9 88 40.9


User provided reference genes

Program Settings