Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0004189 Camellia sinensis var. sinensis HOM05D004031 ORTHO05D006678 0.0e+00 1456.4 756 100.0
vmacro22628 Vaccinium macrocarpon HOM05D004031 ORTHO05D006678 0.0e+00 1200.3 794 79.7
Dinv24047 Davidia involucrata HOM05D004031 ORTHO05D006678 0.0e+00 1148.3 722 82.5
Rhsim03G0003600 Rhododendron simsii HOM05D004031 ORTHO05D006678 0.0e+00 1138.6 778 78.7
Hma1.2p1_0124F.1_g058320 Hydrangea macrophylla HOM05D004031 ORTHO05D006678 0.0e+00 1116.7 756 77.5
CiPaw.10G024900 Carya illinoinensis HOM05D004031 ORTHO05D006678 0.0e+00 1107.8 765 75.6
Actinidia32416 Actinidia chinensis HOM05D004031 ORTHO05D006678 0.0e+00 1089.3 737 79.6
Cfa020139 Carpinus fangiana HOM05D004031 ORTHO05D006678 0.0e+00 1079.7 762 74.1
Prupe.7G082700 Prunus persica HOM05D004031 ORTHO05D006678 1.1e-309 1066.2 757 73.6
TAR623G1150 Trochodendron aralioides HOM05D004031 ORTHO05D006678 1.5e-309 1065.8 792 70.6
CiPaw.09G027800 Carya illinoinensis HOM05D004031 ORTHO05D006678 2.5e-309 1065.1 753 73.2
RcHm_v2.0_Chr3g0479121 Rosa chinensis HOM05D004031 ORTHO05D006678 7.4e-309 1063.5 756 73.7
MD12G1054100 Malus domestica HOM05D004031 ORTHO05D006678 1.3e-308 1062.8 762 73.2
MD14G1053000 Malus domestica HOM05D004031 ORTHO05D006678 2.8e-308 1061.6 762 73.4
Dinv16349 Davidia involucrata HOM05D004031 ORTHO05D006678 3.7e-308 1061.2 756 73.5
GSVIVG01033461001 Vitis vinifera HOM05D004031 ORTHO05D006678 1.1e-307 1059.7 756 73.5
Thecc.05G175900 Theobroma cacao HOM05D004031 ORTHO05D006678 1.0e-305 1053.1 758 72.0
Manes.09G038300 Manihot esculenta HOM05D004031 ORTHO05D006678 5.1e-302 1040.8 759 72.1
Potri.016G060500 Populus trichocarpa HOM05D004031 ORTHO05D006678 4.1e-299 1031.2 757 72.3
FvH4_6g21770 Fragaria vesca HOM05D004031 ORTHO05D006678 1.5e-298 1029.2 756 71.7
Gorai.002G155200 Gossypium raimondii HOM05D004031 ORTHO05D006678 1.3e-297 1026.2 753 70.5
Gohir.D01G124700 Gossypium hirsutum HOM05D004031 ORTHO05D006678 6.5e-297 1023.8 753 70.3
Gohir.A01G137300 Gossypium hirsutum HOM05D004031 ORTHO05D006678 2.1e-295 1018.8 753 70.1
Cc06_g15550 Coffea canephora HOM05D004031 ORTHO05D006678 8.8e-294 1013.4 768 69.3
FAN05G0520 Fragaria x ananassa HOM05D004031 ORTHO05D006678 1.3e-292 1009.6 815 67.1
CANSAT64G2464 Cannabis sativa HOM05D004031 ORTHO05D006678 1.2e-290 1003.0 757 69.2
TWI74G0357 Tripterygium wilfordii HOM05D004031 ORTHO05D006678 5.9e-290 1000.7 756 69.2
FAN09G1850 Fragaria x ananassa HOM05D004031 ORTHO05D006678 1.0e-289 1000.0 786 68.3
Oeu057586.3 Olea europaea HOM05D004031 ORTHO05D006678 6.5e-289 997.3 762 67.8
Atru.chr8.1164 Acer truncatum HOM05D004031 ORTHO05D006678 9.4e-288 993.4 762 69.4
Sc13g0002440 Simmondsia chinensis HOM05D004031 ORTHO05D006678 7.9e-287 990.3 756 68.4
Lalb_Chr15g0079131 Lupinus albus HOM05D004031 ORTHO05D006678 1.8e-286 989.2 755 69.5
PGR142G3960 Punica granatum HOM05D004031 ORTHO05D006678 1.1e-285 986.5 754 68.2
Phvul.001G144700 Phaseolus vulgaris HOM05D004031 ORTHO05D006678 2.6e-285 985.3 757 68.8
Ciclev10013737m.g Citrus clementina HOM05D004031 ORTHO05D006678 9.7e-285 983.4 752 69.0
Glyma.03G147000 Glycine max HOM05D004031 ORTHO05D006678 2.8e-284 981.9 761 68.6
Glyma.19G150400 Glycine max HOM05D004031 ORTHO05D006678 1.4e-283 979.5 781 67.0
Eucgr.K01855 Eucalyptus grandis HOM05D004031 ORTHO05D006678 7.7e-282 973.8 748 69.1
DCAR_009690 Daucus carota HOM05D004031 ORTHO05D006678 2.2e-281 972.2 778 66.7
Nn7g35952 Nelumbo nucifera HOM05D004031 ORTHO05D006678 1.9e-280 969.1 792 65.5
Ca_08544_v3 Cicer arietinum L. HOM05D004031 ORTHO05D006678 5.5e-280 967.6 756 67.6
MBI13_g29636_MAGBIO Magnolia biondii HOM05D004031 ORTHO05D006678 5.5e-280 967.6 778 66.2
ECA233G4423 Erigeron canadensis HOM05D004031 ORTHO05D006678 2.1e-279 965.7 756 67.5
Sabra16G0063400 Salix brachista HOM05D004031 ORTHO05D006678 2.7e-279 965.3 758 68.7
arahy.Tifrunner.gnm1.ann1.YX753W Arachis hypogaea HOM05D004031 ORTHO05D006678 8.8e-278 960.3 761 66.6
TPR.G13372 Trifolium pratense HOM05D004031 ORTHO05D006678 3.3e-277 958.4 764 67.5
CAN.G454.1 Capsicum annuum HOM05D004031 ORTHO05D006678 6.3e-276 954.1 765 66.3
Lj1g0024200 Lotus japonicus HOM05D004031 ORTHO05D006678 1.4e-275 953.0 760 66.6
HanXRQChr13g0398361 Helianthus annuus HOM05D004031 ORTHO05D006678 3.1e-275 951.8 756 65.7
Medtr7g093740 Medicago truncatula HOM05D004031 ORTHO05D006678 3.1e-275 951.8 757 67.5
Potri.006G195000 Populus trichocarpa HOM05D004031 ORTHO05D006678 1.6e-274 949.5 757 67.5
Nitab4.5_0007281g0010 Nicotiana tabacum HOM05D004031 ORTHO05D006678 4.5e-274 948.0 757 66.2
arahy.Tifrunner.gnm1.ann1.4B2YIP Arachis hypogaea HOM05D004031 ORTHO05D006678 1.7e-273 946.0 788 64.6
MSTRG.19923 Avicennia marina HOM05D004031 ORTHO05D006678 1.7e-273 946.0 753 66.7
Aqoxy1G00041 Aquilegia oxysepala HOM05D004031 ORTHO05D006678 3.8e-273 944.9 758 65.0
Sabra06G0149700 Salix brachista HOM05D004031 ORTHO05D006678 6.5e-273 944.1 757 67.0
EL10Ac3g06876 Beta vulgaris HOM05D004031 ORTHO05D006678 1.9e-272 942.6 751 65.0
Psat3g066880 Pisum sativum HOM05D004031 ORTHO05D006678 1.0e-270 936.8 758 67.2
FAN02G1852 Fragaria x ananassa HOM05D004031 ORTHO05D006678 8.8e-270 933.7 828 62.8
MELO3C009604.2 Cucumis melo HOM05D004031 ORTHO05D006678 3.7e-268 928.3 756 65.3
Sopen03g011490 Solanum pennellii HOM05D004031 ORTHO05D006678 2.0e-266 922.5 758 65.0
AUR62012010 Chenopodium quinoa HOM05D004031 ORTHO05D006678 3.5e-266 921.8 752 64.4
Sed0017241 Sechium edule HOM05D004031 ORTHO05D006678 2.2e-265 919.1 748 65.1
Migut.J01861 Erythranthe guttata HOM05D004031 ORTHO05D006678 7.2e-264 914.1 747 63.1
Haze_20030 Corylus avellana HOM05D004031 ORTHO05D006678 2.7e-263 912.1 927 57.5
SalBow6G5892 Salvia bowleyana HOM05D004031 ORTHO05D006678 2.3e-262 909.1 785 63.2
SGA_v2.0_scaffold105G30510 Striga asiatica HOM05D004031 ORTHO05D006678 2.6e-261 905.6 755 62.9
Lju124A22T15 Lonicera japonica HOM05D004031 ORTHO05D006678 2.4e-259 899.0 757 64.6
Lj1A1132T32 Lonicera japonica HOM05D004031 ORTHO05D006678 2.3e-257 892.5 757 64.5
Lsat_1_v5_gn_6_36500 Lactuca sativa HOM05D004031 ORTHO05D006678 5.0e-257 891.3 763 62.8
VMungo1383G1586 Vigna mungo HOM05D004031 ORTHO05D006678 1.2e-255 886.7 700 67.9
PSO339G3947 Papaver somniferum HOM05D004031 ORTHO05D006678 7.0e-251 870.9 777 59.8
PSO384G3799 Papaver somniferum HOM05D004031 ORTHO05D006678 2.8e-247 859.0 767 60.5
ATR0598G228 Amborella trichopoda HOM05D004031 ORTHO05D006678 4.7e-247 858.2 775 57.8
AUR62015326 Chenopodium quinoa HOM05D004031 ORTHO05D006678 5.8e-245 851.3 699 64.1
THA.LOC104799283 Tarenaya hassleriana HOM05D004031 ORTHO05D006678 1.4e-238 830.1 757 59.6
HPP92_024784 Vanilla planifolia HOM05D004031 ORTHO05D006678 1.1e-232 810.4 780 56.9
AT3G12010 Arabidopsis thaliana HOM05D004031 ORTHO05D006678 2.3e-225 786.2 741 57.4
Carub.0003s1135 Capsella rubella HOM05D004031 ORTHO05D006678 1.5e-224 783.5 751 57.3
CARHR086570 Cardamine hirsuta HOM05D004031 ORTHO05D006678 5.6e-224 781.6 738 57.6
FAN14G1892 Fragaria x ananassa HOM05D004031 ORTHO05D006678 6.8e-222 774.6 649 64.7
Sp3g10240 Schrenkiella parvula HOM05D004031 ORTHO05D006678 1.3e-220 770.4 751 56.6
Aa31LG3G5440 Aethionema arabicum HOM05D004031 ORTHO05D006678 1.1e-219 767.3 744 55.4
BcaB04g18697 Brassica carinata HOM05D004031 ORTHO05D006678 1.4e-219 766.9 757 55.9
BcaC01g04064 Brassica carinata HOM05D004031 ORTHO05D006678 7.1e-219 764.6 758 55.4
Sed0010020 Sechium edule HOM05D004031 ORTHO05D006678 3.5e-218 762.3 761 56.9
Os10g0400900 Oryza sativa ssp. japonica HOM05D004031 ORTHO05D006678 4.3e-216 755.4 742 53.2
C03p45440 Brassica napus HOM05D004031 ORTHO05D006678 4.2e-211 738.8 758 54.7
BolC3t16811H Brassica oleracea HOM05D004031 ORTHO05D006678 5.6e-208 728.4 787 52.4
CDE05G0445 Ceratophyllum demersum HOM05D004031 ORTHO05D006678 7.3e-208 728.0 749 53.9
Solyc03g053010.4 Solanum lycopersicum HOM05D004031 ORTHO05D006678 9.6e-208 727.6 628 63.7
Hma1.2p1_0124F.1_g058310 Hydrangea macrophylla HOM05D004031 ORTHO05D006678 1.0e-201 707.6 434 82.5
A03p37440 Brassica napus HOM05D004031 ORTHO05D006678 2.3e-201 706.4 756 53.2
Pp3c6_28540 Physcomitrium patens HOM05D004031 ORTHO05D006678 1.5e-189 667.2 748 48.3
QL07p024699 Quercus lobata HOM05D004031 ORTHO05D006678 7.9e-186 654.8 512 70.1
Mapoly0005s0167 Marchantia polymorpha HOM05D004031 ORTHO05D006678 1.5e-181 640.6 835 45.4
Peaxi162Scf00463g00518 Petunia axillaris HOM05D004031 ORTHO05D006678 6.5e-180 635.2 620 59.0
BcaC05g29296 Brassica carinata HOM05D004031 ORTHO05D006678 1.2e-178 630.9 764 48.8
C05p55790 Brassica napus HOM05D004031 ORTHO05D006678 1.2e-178 630.9 764 48.8
BolC5t34246H Brassica oleracea HOM05D004031 ORTHO05D006678 1.2e-178 630.9 764 48.8
CsaV3_3G038610 Cucumis sativus L. HOM05D004031 ORTHO05D006678 1.0e-177 627.9 544 63.1
unitig_21.g20577 Utricularia gibba HOM05D004031 ORTHO05D006678 8.8e-177 624.8 708 50.0
BraA03t12904Z Brassica rapa HOM05D004031 ORTHO05D006678 1.8e-174 617.1 720 50.0
AL3G23620 Arabidopsis lyrata HOM05D004031 ORTHO05D006678 1.2e-173 614.4 611 57.0
Nitab4.5_0000009g0250 Nicotiana tabacum HOM05D004031 ORTHO05D006678 2.1e-170 603.6 500 66.0
ClCG10G017700 Citrullus lanatus HOM05D004031 ORTHO05D006678 1.0e-164 584.7 399 73.7
Zm00001eb048600 Zea mays HOM05D004031 ORTHO05D006678 6.5e-164 582.0 598 52.0
SMO143G0277 Selaginella moellendorffii HOM05D004031 ORTHO05D006678 1.7e-156 557.4 741 43.7
Aa31LG3G5500 Aethionema arabicum HOM05D004031 ORTHO05D006678 2.0e-152 543.9 444 62.6
Thhalv10020623m.g Eutrema salsugineum HOM05D004031 ORTHO05D006678 2.0e-144 517.3 549 54.8
SEGI_16646 Sequoiadendron giganteum HOM05D004031 ORTHO05D006678 2.1e-122 444.1 573 46.8
QL07p024684 Quercus lobata HOM05D004031 ORTHO05D006678 2.7e-117 427.2 260 79.6
SHI31751 Sapria himalayana HOM05D004031 ORTHO05D006678 3.3e-107 393.7 539 47.3
Psat7g023080 Pisum sativum HOM05D004031 ORTHO05D006678 1.5e-83 315.1 354 50.3
Cpa.g.c40176 Carica papaya HOM05D004031 ORTHO05D006678 1.8e-81 308.1 233 69.5
CSS0030127 Camellia sinensis var. sinensis HOM05D004031 ORTHO05D006678 2.5e-78 297.7 161 91.3
Cpa.g.sc85.42 Carica papaya HOM05D004031 ORTHO05D006678 1.2e-77 295.4 194 70.6
TAR623G0223 Trochodendron aralioides HOM05D004031 ORTHO05D006678 1.3e-71 275.4 173 77.5
CSS0049250 Camellia sinensis var. sinensis HOM05D004031 ORTHO05D006678 6.7e-60 236.5 118 100.0
CSS0030002 Camellia sinensis var. sinensis HOM05D004031 ORTHO05D006678 3.8e-55 220.7 114 98.2
Peaxi162Scf00463g00519 Petunia axillaris HOM05D004031 ORTHO05D006678 5.7e-51 206.8 142 68.3
Solyc03g053000.4 Solanum lycopersicum HOM05D004031 ORTHO05D006678 1.3e-50 205.7 168 60.7
SHI31745 Sapria himalayana HOM05D004031 ORTHO05D006678 4.2e-46 190.7 143 60.8
Nitab4.5_0000009g0260 Nicotiana tabacum HOM05D004031 ORTHO05D011186 4.7e-45 187.2 131 67.2
Psat4g142720 Pisum sativum HOM05D003784 ORTHO05D004345 9.4e-38 162.9 130 64.6
CBR_g44463 Chara braunii HOM05D000019 ORTHO05D000002 6.3e-34 150.2 157 45.9
PRCOL_00003629 Prasinoderma coloniale HOM05D004031 ORTHO05D006678 5.9e-32 143.7 706 23.8
Psat4g142800 Pisum sativum HOM05D003784 ORTHO05D004345 1.7e-31 142.1 174 51.7
CBR_g32657 Chara braunii HOM05D004031 ORTHO05D006678 3.8e-31 141.0 226 35.8
Aa31LG3G5510 Aethionema arabicum HOM05D004031 ORTHO05D006678 7.5e-27 126.7 91 65.9
BcaB06g25555 Brassica carinata HOM05D004031 ORTHO05D006678 1.3e-26 125.9 99 62.6
Nn3g18463 Nelumbo nucifera HOM05D004031 ORTHO05D006678 2.4e-25 121.7 74 81.1
Cre08.g370250 Chlamydomonas reinhardtii HOM05D004031 ORTHO05D006678 2.8e-21 108.2 549 22.8
C05p55850 Brassica napus HOM05D004031 ORTHO05D006678 5.2e-20 104.0 90 52.2
BolC5t34254H Brassica oleracea HOM05D004031 ORTHO05D006678 5.2e-20 104.0 90 52.2
CBR_g32659 Chara braunii HOM05D001409 ORTHO05D001511 5.9e-16 90.5 154 34.4
MCO13G277 Micromonas commoda HOM05D004031 ORTHO05D006678 1.3e-15 89.4 322 28.9
Nn2g13219 Nelumbo nucifera HOM05D004031 ORTHO05D006678 1.7e-10 72.4 46 76.1
Hund07844 Selenicereus undatus HOM05D004031 ORTHO05D006678 2.9e-10 71.6 62 62.9
SHI31749 Sapria himalayana HOM05D003430 ORTHO05D004809 9.2e-09 66.6 58 53.4
SHI31750 Sapria himalayana HOM05D003430 ORTHO05D014065 5.0e-07 60.8 70 48.6


User provided reference genes

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