Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0004187 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D022117 1.0e-46 189.5 82 100.0
CSS0032793 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D022117 1.0e-46 189.5 82 100.0
CSS0009798 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D022117 5.8e-42 173.7 87 89.7
Actinidia37536 Actinidia chinensis HOM05D004940 ORTHO05D007805 5.8e-34 147.1 105 65.7
Rhsim13G0038600 Rhododendron simsii HOM05D004940 ORTHO05D007805 9.9e-34 146.4 87 78.2
Cc01_g18010 Coffea canephora HOM05D004940 ORTHO05D007805 1.7e-33 145.6 87 78.2
TAR362G0048 Trochodendron aralioides HOM05D004940 ORTHO05D007805 3.8e-33 144.4 87 77.0
vmacro02697 Vaccinium macrocarpon HOM05D004940 ORTHO05D007805 3.8e-33 144.4 87 77.0
TWI12G0664 Tripterygium wilfordii HOM05D004940 ORTHO05D007805 4.9e-33 144.1 87 77.0
Aqoxy5G00176 Aquilegia oxysepala HOM05D004940 ORTHO05D007805 1.4e-32 142.5 87 75.9
Dinv16378 Davidia involucrata HOM05D004940 ORTHO05D007805 1.9e-32 142.1 87 75.9
MD05G1192400 Malus domestica HOM05D004940 ORTHO05D007805 2.4e-32 141.7 86 75.6
TWI75G1829 Tripterygium wilfordii HOM05D004940 ORTHO05D007805 3.2e-32 141.4 87 75.9
GSVIVG01028386001 Vitis vinifera HOM05D004940 ORTHO05D007805 3.2e-32 141.4 87 74.7
Nn1g02898 Nelumbo nucifera HOM05D004940 ORTHO05D007805 4.2e-32 141.0 87 77.0
PSO764G0099 Papaver somniferum HOM05D004940 ORTHO05D007805 4.2e-32 141.0 87 74.7
PSO832G3423 Papaver somniferum HOM05D004940 ORTHO05D007805 4.2e-32 141.0 87 74.7
SalBow4G0784 Salvia bowleyana HOM05D004940 ORTHO05D007805 4.2e-32 141.0 87 73.6
Sc24g0003690 Simmondsia chinensis HOM05D004940 ORTHO05D007805 9.3e-32 139.8 87 73.6
Migut.D00459 Erythranthe guttata HOM05D004940 ORTHO05D007805 1.6e-31 139.0 87 73.6
Lj1g0003710 Lotus japonicus HOM05D004940 ORTHO05D007805 1.6e-31 139.0 87 73.6
Oeu028892.3 Olea europaea HOM05D004940 ORTHO05D007805 1.6e-31 139.0 87 73.6
MSTRG.18341 Avicennia marina HOM05D004940 ORTHO05D007805 2.7e-31 138.3 87 73.6
EL10Ac7g17647 Beta vulgaris HOM05D004940 ORTHO05D007805 2.7e-31 138.3 87 73.6
HPP92_012808 Vanilla planifolia HOM05D004940 ORTHO05D007805 3.5e-31 137.9 87 73.6
AUR62025474 Chenopodium quinoa HOM05D004940 ORTHO05D007805 4.6e-31 137.5 87 73.6
HanXRQChr04g0111301 Helianthus annuus HOM05D004940 ORTHO05D007805 6.0e-31 137.1 87 73.6
Lalb_Chr01g0019571 Lupinus albus HOM05D004940 ORTHO05D007805 6.0e-31 137.1 87 73.6
Gohir.D08G056200 Gossypium hirsutum HOM05D004940 ORTHO05D007805 7.8e-31 136.7 87 73.6
Gorai.004G057300 Gossypium raimondii HOM05D004940 ORTHO05D007805 7.8e-31 136.7 87 73.6
QL09p040550 Quercus lobata HOM05D004940 ORTHO05D007805 7.8e-31 136.7 86 70.9
CAN.G1270.3 Capsicum annuum HOM05D004940 ORTHO05D007805 1.0e-30 136.3 87 71.3
Medtr7g098010 Medicago truncatula HOM05D004940 ORTHO05D007805 1.0e-30 136.3 87 73.6
AUR62008763 Chenopodium quinoa HOM05D004940 ORTHO05D007805 1.3e-30 136.0 87 73.6
Glyma.19G166800 Glycine max HOM05D004940 ORTHO05D007805 1.3e-30 136.0 87 72.4
CiPaw.03G268400 Carya illinoinensis HOM05D004940 ORTHO05D007805 2.3e-30 135.2 87 70.1
MBI07_g18994_MAGBIO Magnolia biondii HOM05D004940 ORTHO05D007805 3.9e-30 134.4 87 72.4
Cpa.g.sc165.41 Carica papaya HOM05D004940 ORTHO05D007805 5.1e-30 134.0 87 69.0
RcHm_v2.0_Chr6g0287291 Rosa chinensis HOM05D004940 ORTHO05D007805 6.6e-30 133.7 87 71.3
Sabra14G0144700 Salix brachista HOM05D004940 ORTHO05D007805 6.6e-30 133.7 87 70.1
Potri.014G195500 Populus trichocarpa HOM05D004940 ORTHO05D007805 8.7e-30 133.3 87 70.1
Lsat_1_v5_gn_8_92240 Lactuca sativa HOM05D004940 ORTHO05D007805 1.1e-29 132.9 87 71.3
Thecc.01G253300 Theobroma cacao HOM05D004940 ORTHO05D007805 1.1e-29 132.9 87 71.3
Migut.N02221 Erythranthe guttata HOM05D004940 ORTHO05D007805 1.5e-29 132.5 87 71.3
Eucgr.A01366 Eucalyptus grandis HOM05D004940 ORTHO05D007805 1.5e-29 132.5 87 67.8
MD10G1178900 Malus domestica HOM05D004940 ORTHO05D007805 1.5e-29 132.5 86 69.8
TPR.G9192 Trifolium pratense HOM05D004940 ORTHO05D007805 1.5e-29 132.5 87 70.1
FvH4_2g20890 Fragaria vesca HOM05D004940 ORTHO05D007805 1.9e-29 132.1 87 71.3
FAN20G1599 Fragaria x ananassa HOM05D004940 ORTHO05D007805 1.9e-29 132.1 84 72.6
FAN27G1261 Fragaria x ananassa HOM05D004940 ORTHO05D007805 1.9e-29 132.1 87 71.3
Psat3g055720 Pisum sativum HOM05D004940 ORTHO05D007805 2.5e-29 131.7 87 70.1
Solyc09g072710.4 Solanum lycopersicum HOM05D004940 ORTHO05D007805 2.5e-29 131.7 87 69.0
PGR031G0691 Punica granatum HOM05D004940 ORTHO05D007805 4.3e-29 131.0 87 67.8
arahy.Tifrunner.gnm1.ann1.N1VHSE Arachis hypogaea HOM05D004940 ORTHO05D007805 5.6e-29 130.6 86 69.8
arahy.Tifrunner.gnm1.ann1.YK26R7 Arachis hypogaea HOM05D004940 ORTHO05D007805 5.6e-29 130.6 86 69.8
ECA236G4817 Erigeron canadensis HOM05D004940 ORTHO05D007805 9.6e-29 129.8 87 71.3
Phvul.001G163200 Phaseolus vulgaris HOM05D004940 ORTHO05D007805 9.6e-29 129.8 87 67.8
Sopen09g028520 Solanum pennellii HOM05D004940 ORTHO05D007805 9.6e-29 129.8 87 67.8
VMungo1383G2176 Vigna mungo HOM05D004940 ORTHO05D007805 9.6e-29 129.8 87 67.8
Duzib138G0347 Durio zibethinus HOM05D004940 ORTHO05D007805 2.8e-28 128.3 87 67.8
Atru.chr5.1783 Acer truncatum HOM05D004940 ORTHO05D007805 4.8e-28 127.5 87 67.8
Atru.chr5.1786 Acer truncatum HOM05D004940 ORTHO05D007805 4.8e-28 127.5 87 67.8
DCAR_000927 Daucus carota HOM05D004940 ORTHO05D007805 6.2e-28 127.1 87 66.7
Zm00001eb258680 Zea mays HOM05D004940 ORTHO05D007805 6.2e-28 127.1 87 70.1
CsaV3_3G028180 Cucumis sativus L. HOM05D004940 ORTHO05D007805 8.1e-28 126.7 87 66.7
CANSAT01G2138 Cannabis sativa HOM05D004940 ORTHO05D007805 1.4e-27 125.9 87 67.8
SEGI_08888 Sequoiadendron giganteum HOM05D004940 ORTHO05D007805 1.4e-27 125.9 87 67.8
Sed0008536 Sechium edule HOM05D004940 ORTHO05D007805 5.3e-27 124.0 87 65.5
THA.LOC104826048 Tarenaya hassleriana HOM05D004940 ORTHO05D007805 2.0e-26 122.1 85 67.1
Ciclev10019263m.g Citrus clementina HOM05D004940 ORTHO05D007805 3.4e-26 121.3 87 63.2
Sp1g02850 Schrenkiella parvula HOM05D004940 ORTHO05D007805 3.4e-26 121.3 87 66.7
Aa31LG1G20810 Aethionema arabicum HOM05D004940 ORTHO05D007805 4.5e-26 120.9 87 66.7
AT1G04010 Arabidopsis thaliana HOM05D004940 ORTHO05D007805 5.8e-26 120.6 87 65.5
BcaC05g24475 Brassica carinata HOM05D004940 ORTHO05D007805 5.8e-26 120.6 87 65.5
BcaC07g42217 Brassica carinata HOM05D004940 ORTHO05D007805 5.8e-26 120.6 87 65.5
A09p68080 Brassica napus HOM05D004940 ORTHO05D007805 5.8e-26 120.6 87 65.5
C08p52520 Brassica napus HOM05D004940 ORTHO05D007805 5.8e-26 120.6 87 65.5
BolC5t29011H Brassica oleracea HOM05D004940 ORTHO05D007805 5.8e-26 120.6 87 65.5
BolC8t52779H Brassica oleracea HOM05D004940 ORTHO05D007805 5.8e-26 120.6 87 65.5
BraA09t42143Z Brassica rapa HOM05D004940 ORTHO05D007805 5.8e-26 120.6 87 65.5
BraA10t42520Z Brassica rapa HOM05D004940 ORTHO05D007805 5.8e-26 120.6 87 65.5
Carub.0001s0317 Capsella rubella HOM05D004940 ORTHO05D007805 5.8e-26 120.6 87 65.5
Thhalv10007051m.g Eutrema salsugineum HOM05D004940 ORTHO05D007805 5.8e-26 120.6 87 65.5
AL1G13620 Arabidopsis lyrata HOM05D004940 ORTHO05D007805 7.6e-26 120.2 87 65.5
CARHR003360 Cardamine hirsuta HOM05D004940 ORTHO05D007805 7.6e-26 120.2 87 65.5
A10p02520 Brassica napus HOM05D004940 ORTHO05D007805 3.8e-25 117.9 106 56.6
C05p02330 Brassica napus HOM05D004940 ORTHO05D007805 3.8e-25 117.9 107 56.1
CSS0021031 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D007805 1.2e-23 112.8 62 83.9
Haze_24676 Corylus avellana HOM05D004940 ORTHO05D007805 1.3e-22 109.4 80 65.0
Hund05470 Selenicereus undatus HOM05D004940 ORTHO05D007805 3.7e-20 101.3 53 77.4
SMO137G0189 Selaginella moellendorffii HOM05D004940 ORTHO05D007805 6.2e-20 100.5 87 55.2
FAN15G2608 Fragaria x ananassa HOM05D004940 ORTHO05D007805 1.1e-19 99.8 62 74.2
Glyma.03G165500 Glycine max HOM05D004940 ORTHO05D007805 2.4e-19 98.6 51 78.4
Nitab4.5_0002389g0100 Nicotiana tabacum HOM05D004940 ORTHO05D007805 2.4e-19 98.6 56 73.2
Nitab4.5_0003295g0190 Nicotiana tabacum HOM05D004940 ORTHO05D007805 2.4e-19 98.6 56 73.2
Mapoly0023s0070 Marchantia polymorpha HOM05D004940 ORTHO05D007805 3.1e-19 98.2 80 58.8
AagrBONN_evm.TU.Sc2ySwM_344.1925 Anthoceros agrestis HOM05D004940 ORTHO05D007805 6.9e-19 97.1 88 55.7
Manes.12G035200 Manihot esculenta HOM05D004940 ORTHO05D007805 6.9e-19 97.1 51 76.5
FAN24G3024 Fragaria x ananassa HOM05D004940 ORTHO05D007805 1.2e-18 96.3 62 72.6
Ca_08723_v3 Cicer arietinum L. HOM05D004940 ORTHO05D007805 4.5e-18 94.4 52 75.0
Pp3c16_20320 Physcomitrium patens HOM05D004940 ORTHO05D007805 1.7e-17 92.4 88 53.4
CSS0050068 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D022117 3.8e-17 91.3 87 57.5
Duzib133G0552 Durio zibethinus HOM05D004940 ORTHO05D007805 7.1e-16 87.0 51 68.6
SMO137G0113 Selaginella moellendorffii HOM05D004940 ORTHO05D007805 2.7e-15 85.1 87 50.6
Phvul.008G143913 Phaseolus vulgaris HOM05D004940 ORTHO05D022117 1.0e-14 83.2 85 51.8
ATR0736G200 Amborella trichopoda HOM05D004940 ORTHO05D007805 1.1e-13 79.7 42 81.0
ClCG07G001250 Citrullus lanatus HOM05D004940 ORTHO05D007805 1.1e-08 63.2 84 44.0
CSS0034361 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 3.0e-06 55.1 64 48.4


User provided reference genes

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