Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0004179 Camellia sinensis var. sinensis HOM05D005017 ORTHO05D006044 5.3e-36 154.1 91 100.0
CSS0030454 Camellia sinensis var. sinensis HOM05D005017 ORTHO05D006044 3.3e-30 134.8 82 98.8
vmacro18822 Vaccinium macrocarpon HOM05D005017 ORTHO05D006044 1.3e-23 112.8 82 81.7
Rhsim08G0231100 Rhododendron simsii HOM05D005017 ORTHO05D006044 1.1e-22 109.8 82 81.7
Actinidia21740 Actinidia chinensis HOM05D005017 ORTHO05D006044 3.7e-21 104.8 82 78.0
Dinv30400 Davidia involucrata HOM05D005017 ORTHO05D006044 6.3e-21 104.0 78 83.3
QL05p015800 Quercus lobata HOM05D005017 ORTHO05D006044 1.4e-20 102.8 76 76.3
CiPaw.01G227300 Carya illinoinensis HOM05D005017 ORTHO05D006044 1.8e-20 102.4 82 74.4
SGA_v2.0_scaffold71G23756 Striga asiatica HOM05D005017 ORTHO05D006044 1.8e-20 102.4 82 78.0
Actinidia32130 Actinidia chinensis HOM05D005017 ORTHO05D006044 5.3e-20 100.9 73 80.8
ClCG09G000540 Citrullus lanatus HOM05D005017 ORTHO05D006044 5.3e-20 100.9 78 78.2
Thecc.06G107700 Theobroma cacao HOM05D005017 ORTHO05D006044 5.9e-19 97.4 78 75.6
COL.COLO4_30606 Corchorus olitorius HOM05D005017 ORTHO05D006044 7.6e-19 97.1 78 76.9
Nn8g38928 Nelumbo nucifera HOM05D005017 ORTHO05D006044 7.6e-19 97.1 82 75.6
Duzib235G0510 Durio zibethinus HOM05D005017 ORTHO05D006044 5.0e-18 94.4 78 74.4
DCAR_026373 Daucus carota HOM05D005017 ORTHO05D006044 8.5e-18 93.6 82 74.4
Potri.001G199500 Populus trichocarpa HOM05D005017 ORTHO05D006044 1.4e-17 92.8 78 73.1
MSTRG.22609 Avicennia marina HOM05D005017 ORTHO05D006044 2.5e-17 92.0 82 70.7
Glyma.07G012600 Glycine max HOM05D005017 ORTHO05D006044 2.5e-17 92.0 78 76.9
MBI01_g27633_MAGBIO Magnolia biondii HOM05D005017 ORTHO05D006044 2.5e-17 92.0 77 72.7
Prupe.3G052700 Prunus persica HOM05D005017 ORTHO05D006044 5.5e-17 90.9 78 73.1
TAR624G0026 Trochodendron aralioides HOM05D005017 ORTHO05D006044 5.5e-17 90.9 82 70.7
VMungo0331G1330 Vigna mungo HOM05D005017 ORTHO05D006044 1.2e-16 89.7 79 74.7
Manes.04G137400 Manihot esculenta HOM05D005017 ORTHO05D006044 1.6e-16 89.4 82 70.7
unitig_0.g2868 Utricularia gibba HOM05D005017 ORTHO05D006044 1.6e-16 89.4 82 70.7
Dinv37934 Davidia involucrata HOM05D005017 ORTHO05D006044 2.7e-16 88.6 82 72.0
Cpa.g.sc663.1 Carica papaya HOM05D005017 ORTHO05D006044 4.6e-16 87.8 83 65.1
MD09G1196300 Malus domestica HOM05D005017 ORTHO05D006044 6.1e-16 87.4 78 71.8
MELO3C024403.2 Cucumis melo HOM05D005017 ORTHO05D006044 7.9e-16 87.0 79 72.2
SGA_v2.0_scaffold45G16987 Striga asiatica HOM05D005017 ORTHO05D006044 7.9e-16 87.0 82 73.2
CANSAT56G3588 Cannabis sativa HOM05D005017 ORTHO05D006044 1.0e-15 86.7 83 71.1
MD17G1177100 Malus domestica HOM05D005017 ORTHO05D006044 1.8e-15 85.9 78 69.2
Cc04_g02270 Coffea canephora HOM05D005017 ORTHO05D006044 2.3e-15 85.5 78 71.8
Sed0003007 Sechium edule HOM05D005017 ORTHO05D006044 2.3e-15 85.5 77 71.4
CsaV3_7G034910 Cucumis sativus L. HOM05D005017 ORTHO05D006044 3.0e-15 85.1 79 70.9
Gohir.A02G116100 Gossypium hirsutum HOM05D005017 ORTHO05D006044 3.0e-15 85.1 78 70.5
Ciclev10026315m.g Citrus clementina HOM05D005017 ORTHO05D006044 5.1e-15 84.3 81 69.1
FAN14G3976 Fragaria x ananassa HOM05D005017 ORTHO05D006044 1.1e-14 83.2 79 70.9
Hma1.2p1_0679F.1_g202290 Hydrangea macrophylla HOM05D005017 ORTHO05D006044 1.9e-14 82.4 82 63.4
PGR102G3241 Punica granatum HOM05D005017 ORTHO05D006044 1.9e-14 82.4 79 70.9
Atru.chr1.3634 Acer truncatum HOM05D005017 ORTHO05D006044 2.5e-14 82.0 77 70.1
ATR0789G068 Amborella trichopoda HOM05D005017 ORTHO05D006044 2.5e-14 82.0 70 68.6
Phvul.010G142100 Phaseolus vulgaris HOM05D005017 ORTHO05D006044 2.5e-14 82.0 79 73.4
GSVIVG01016892001 Vitis vinifera HOM05D005017 ORTHO05D006044 4.3e-14 81.3 82 67.1
Gohir.D03G057100 Gossypium hirsutum HOM05D005017 ORTHO05D006044 5.7e-14 80.9 76 68.4
Gorai.003G060200 Gossypium raimondii HOM05D005017 ORTHO05D006044 5.7e-14 80.9 76 68.4
Ca_23294_v3 Cicer arietinum L. HOM05D005017 ORTHO05D006044 1.7e-13 79.3 78 70.5
Migut.I00995 Erythranthe guttata HOM05D005017 ORTHO05D006044 1.7e-13 79.3 70 75.7
Nitab4.5_0004848g0030 Nicotiana tabacum HOM05D005017 ORTHO05D006044 1.7e-13 79.3 76 69.7
Lsat_1_v5_gn_1_36441 Lactuca sativa HOM05D005017 ORTHO05D006044 2.2e-13 79.0 78 69.2
arahy.Tifrunner.gnm1.ann1.TCAK26 Arachis hypogaea HOM05D005017 ORTHO05D006044 6.3e-13 77.4 78 61.5
arahy.Tifrunner.gnm1.ann1.ZK2LT4 Arachis hypogaea HOM05D005017 ORTHO05D006044 6.3e-13 77.4 78 61.5
Gohir.D05G135550 Gossypium hirsutum HOM05D005017 ORTHO05D006044 8.2e-13 77.0 49 75.5
BcaB07g33629 Brassica carinata HOM05D005017 ORTHO05D006044 1.4e-12 76.3 74 71.6
AT1G51730 Arabidopsis thaliana HOM05D005017 ORTHO05D006044 1.8e-12 75.9 78 69.2
Lalb_Chr01g0013321 Lupinus albus HOM05D005017 ORTHO05D006044 1.8e-12 75.9 84 66.7
Oeu052818.1 Olea europaea HOM05D005017 ORTHO05D006044 2.4e-12 75.5 82 65.9
Potri.001G193700 Populus trichocarpa HOM05D005017 ORTHO05D006044 2.4e-12 75.5 78 65.4
Sp1g38370 Schrenkiella parvula HOM05D005017 ORTHO05D006044 3.1e-12 75.1 79 67.1
PGSC0003DMG401002511 Solanum tuberosum HOM05D005017 ORTHO05D006044 3.1e-12 75.1 76 67.1
TPR.G8766 Trifolium pratense HOM05D005017 ORTHO05D006044 3.1e-12 75.1 78 67.9
Eucgr.F03103 Eucalyptus grandis HOM05D005017 ORTHO05D006044 4.1e-12 74.7 78 69.2
CAN.G1668.3 Capsicum annuum HOM05D005017 ORTHO05D006044 5.3e-12 74.3 76 67.1
Medtr8g015590 Medicago truncatula HOM05D005017 ORTHO05D006044 6.9e-12 73.9 78 66.7
Nitab4.5_0006071g0010 Nicotiana tabacum HOM05D005017 ORTHO05D006044 9.1e-12 73.6 71 70.4
Glyma.08G196300 Glycine max HOM05D005017 ORTHO05D006044 1.2e-11 73.2 78 69.2
Solyc03g121310.2 Solanum lycopersicum HOM05D005017 ORTHO05D006044 1.2e-11 73.2 76 65.8
Sopen03g040120 Solanum pennellii HOM05D005017 ORTHO05D006044 1.2e-11 73.2 76 65.8
Hma1.2p1_0679F.1_g202280 Hydrangea macrophylla HOM05D005017 ORTHO05D006044 2.0e-11 72.4 78 62.8
AL1G59670 Arabidopsis lyrata HOM05D005017 ORTHO05D006044 2.6e-11 72.0 82 65.9
Aqoxy2G03852 Aquilegia oxysepala HOM05D005017 ORTHO05D006044 3.4e-11 71.6 76 67.1
Lj3g0014772 Lotus japonicus HOM05D005017 ORTHO05D006044 3.4e-11 71.6 80 65.0
FAN02G2875 Fragaria x ananassa HOM05D005017 ORTHO05D006044 4.5e-11 71.2 79 65.8
HanXRQChr04g0095781 Helianthus annuus HOM05D005017 ORTHO05D006044 4.5e-11 71.2 81 65.4
Lalb_Chr04g0263111 Lupinus albus HOM05D005017 ORTHO05D006044 5.9e-11 70.9 84 63.1
Psat4g194480 Pisum sativum HOM05D005017 ORTHO05D006044 5.9e-11 70.9 79 67.1
FvH4_6g32940 Fragaria vesca HOM05D005017 ORTHO05D006044 7.7e-11 70.5 79 64.6
Gohir.A05G133633 Gossypium hirsutum HOM05D005017 ORTHO05D006044 7.7e-11 70.5 48 70.8
RcHm_v2.0_Chr2g0142451 Rosa chinensis HOM05D005017 ORTHO05D006044 7.7e-11 70.5 79 65.8
THA.LOC104817935 Tarenaya hassleriana HOM05D005017 ORTHO05D006044 7.7e-11 70.5 82 61.0
ECA247G1989 Erigeron canadensis HOM05D005017 ORTHO05D006044 1.0e-10 70.1 77 66.2
FAN05G4929 Fragaria x ananassa HOM05D005017 ORTHO05D006044 1.0e-10 70.1 79 64.6
FAN09G3568 Fragaria x ananassa HOM05D005017 ORTHO05D006044 1.0e-10 70.1 79 64.6
Atru.chr1.3630 Acer truncatum HOM05D005017 ORTHO05D006044 2.2e-10 68.9 70 68.6
Os01g0558300 Oryza sativa ssp. japonica HOM05D005017 ORTHO05D006044 2.2e-10 68.9 74 64.9
Thhalv10011475m.g Eutrema salsugineum HOM05D005017 ORTHO05D006044 2.9e-10 68.6 79 62.0
TWI79G0337 Tripterygium wilfordii HOM05D005017 ORTHO05D006044 2.9e-10 68.6 74 68.9
BolC6t36489H Brassica oleracea HOM05D005017 ORTHO05D006044 5.0e-10 67.8 75 65.3
HPP92_023230 Vanilla planifolia HOM05D005017 ORTHO05D006044 5.0e-10 67.8 73 65.8
Aa31LG10G3080 Aethionema arabicum HOM05D005017 ORTHO05D006044 6.5e-10 67.4 78 59.0
Gorai.009G139400 Gossypium raimondii HOM05D005017 ORTHO05D006044 6.5e-10 67.4 43 74.4
Cfa003607 Carpinus fangiana HOM05D005017 ORTHO05D006044 1.1e-09 66.6 77 50.6
Aa31csc1849G10 Aethionema arabicum HOM05D005017 ORTHO05D006044 1.4e-09 66.2 78 55.1
BcaC08g43934 Brassica carinata HOM05D005017 ORTHO05D006044 2.5e-09 65.5 76 63.2
A05p19400 Brassica napus HOM05D005017 ORTHO05D006044 2.5e-09 65.5 76 63.2
A06p02280 Brassica napus HOM05D005017 ORTHO05D006044 2.5e-09 65.5 78 66.7
C06p13290 Brassica napus HOM05D005017 ORTHO05D006044 2.5e-09 65.5 76 63.2
BraA05t20844Z Brassica rapa HOM05D005017 ORTHO05D006044 2.5e-09 65.5 76 63.2
Haze_15918 Corylus avellana HOM05D005017 ORTHO05D006044 2.5e-09 65.5 43 72.1
BcaC01g01293 Brassica carinata HOM05D005017 ORTHO05D006044 3.2e-09 65.1 75 64.0
C03p90280 Brassica napus HOM05D005017 ORTHO05D006044 3.2e-09 65.1 75 64.0
BolC3t21350H Brassica oleracea HOM05D005017 ORTHO05D006044 3.2e-09 65.1 75 64.0
BraA08t32293Z Brassica rapa HOM05D005017 ORTHO05D006044 3.2e-09 65.1 75 64.0
Zm00001eb162290 Zea mays HOM05D005017 ORTHO05D006044 4.2e-09 64.7 75 65.3
Zm00001eb356680 Zea mays HOM05D005017 ORTHO05D006044 4.2e-09 64.7 76 63.2
Ah.01g016970 Amaranthus hybridus HOM05D005017 ORTHO05D006044 7.2e-09 63.9 82 57.3
A08p02530 Brassica napus HOM05D005017 ORTHO05D006044 1.2e-08 63.2 75 62.7
Carub.0001s4060 Capsella rubella HOM05D005017 ORTHO05D006044 1.6e-08 62.8 79 58.2
CBR_g78883 Chara braunii HOM05D005017 ORTHO05D006044 2.1e-08 62.4 76 44.7
PSO210G2569 Papaver somniferum HOM05D005017 ORTHO05D006044 2.1e-08 62.4 78 59.0
SalBow6G5092 Salvia bowleyana HOM05D005017 ORTHO05D006044 2.7e-08 62.0 72 55.6
TWI31G0253 Tripterygium wilfordii HOM05D005017 ORTHO05D006044 3.6e-08 61.6 74 68.9
ECA234G0069 Erigeron canadensis HOM05D005017 ORTHO05D006044 6.1e-08 60.8 77 53.2
CARHR041890 Cardamine hirsuta HOM05D005017 ORTHO05D006044 1.4e-07 59.7 78 59.0
CDE05G2485 Ceratophyllum demersum HOM05D005017 ORTHO05D006044 1.8e-07 59.3 71 63.4
HanXRQChr12g0360701 Helianthus annuus HOM05D005017 ORTHO05D006044 1.8e-07 59.3 73 50.7
Lsat_1_v5_gn_5_133981 Lactuca sativa HOM05D005017 ORTHO05D006044 1.8e-07 59.3 74 62.2
Ah.01g004460 Amaranthus hybridus HOM05D005017 ORTHO05D006044 2.3e-07 58.9 82 54.9
SEGI_04320 Sequoiadendron giganteum HOM05D005017 ORTHO05D006044 1.5e-06 56.2 77 55.8
EL10Ac9g21132 Beta vulgaris HOM05D005017 ORTHO05D006044 2.0e-06 55.8 69 63.8
Mapoly0076s0035 Marchantia polymorpha HOM05D005017 ORTHO05D006044 3.3e-06 55.1 75 56.0
SMO300G0020 Selaginella moellendorffii HOM05D005017 ORTHO05D006044 5.7e-06 54.3 72 56.9


User provided reference genes

Program Settings