Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0004178 Camellia sinensis var. sinensis HOM05D005588 ORTHO05D006615 5.0e-205 717.6 380 100.0
Actinidia11175 Actinidia chinensis HOM05D005588 ORTHO05D006615 3.8e-152 542.0 364 77.7
Actinidia24397 Actinidia chinensis HOM05D005588 ORTHO05D006615 8.7e-149 530.8 364 76.4
Rhsim06G0125900 Rhododendron simsii HOM05D005588 ORTHO05D006615 3.2e-143 512.3 332 78.0
Dinv17600 Davidia involucrata HOM05D005588 ORTHO05D006615 1.9e-140 503.1 338 78.1
Thecc.02G311800 Theobroma cacao HOM05D005588 ORTHO05D006615 2.6e-137 492.7 338 74.6
Duzib248G1275 Durio zibethinus HOM05D005588 ORTHO05D006615 1.3e-136 490.3 332 73.5
Duzib251G0713 Durio zibethinus HOM05D005588 ORTHO05D006615 9.3e-135 484.2 333 73.6
TAR629G1265 Trochodendron aralioides HOM05D005588 ORTHO05D006615 1.9e-132 476.5 363 67.2
TWI53G2090 Tripterygium wilfordii HOM05D005588 ORTHO05D006615 2.5e-132 476.1 332 72.0
GSVIVG01010179001 Vitis vinifera HOM05D005588 ORTHO05D006615 3.4e-129 465.7 337 72.7
Gohir.A13G026000 Gossypium hirsutum HOM05D005588 ORTHO05D006615 7.4e-124 448.0 340 67.6
Ciclev10032024m.g Citrus clementina HOM05D005588 ORTHO05D006615 2.1e-123 446.4 332 67.5
Gorai.013G027800 Gossypium raimondii HOM05D005588 ORTHO05D006615 1.8e-122 443.4 340 67.1
Manes.11G109700 Manihot esculenta HOM05D005588 ORTHO05D006615 6.9e-122 441.4 327 68.2
Potri.007G070600 Populus trichocarpa HOM05D005588 ORTHO05D006615 3.2e-119 432.6 332 63.9
Aqoxy3G04274 Aquilegia oxysepala HOM05D005588 ORTHO05D006615 9.3e-119 431.0 334 69.5
Prupe.1G345600 Prunus persica HOM05D005588 ORTHO05D006615 1.2e-118 430.6 341 63.3
Lj6C721G15 Lonicera japonica HOM05D005588 ORTHO05D006615 2.1e-118 429.9 341 66.3
TAR371G0486 Trochodendron aralioides HOM05D005588 ORTHO05D006615 2.3e-117 426.4 363 60.1
Lj3C851G4 Lonicera japonica HOM05D005588 ORTHO05D006615 6.7e-117 424.9 334 63.5
MSTRG.11941 Avicennia marina HOM05D005588 ORTHO05D006615 1.1e-116 424.1 331 65.3
Nitab4.5_0000139g0120 Nicotiana tabacum HOM05D005588 ORTHO05D006615 5.7e-116 421.8 336 64.3
PSO063G5510 Papaver somniferum HOM05D005588 ORTHO05D006615 9.7e-116 421.0 332 64.2
Cc11_g00190 Coffea canephora HOM05D005588 ORTHO05D006615 2.2e-115 419.9 352 65.1
VMungo0251G1670 Vigna mungo HOM05D005588 ORTHO05D006615 2.8e-115 419.5 332 62.0
CANSAT64G0248 Cannabis sativa HOM05D005588 ORTHO05D006615 6.3e-115 418.3 324 64.5
RcHm_v2.0_Chr4g0446471 Rosa chinensis HOM05D005588 ORTHO05D006615 3.1e-114 416.0 339 60.5
Eucgr.G02567 Eucalyptus grandis HOM05D005588 ORTHO05D006615 5.3e-114 415.2 334 63.8
Phvul.003G006600 Phaseolus vulgaris HOM05D005588 ORTHO05D006615 5.3e-114 415.2 334 62.3
PSO782G2071 Papaver somniferum HOM05D005588 ORTHO05D006615 1.2e-113 414.1 332 63.3
HanXRQChr13g0388111 Helianthus annuus HOM05D005588 ORTHO05D006615 2.0e-113 413.3 339 61.1
PGSC0003DMG400032559 Solanum tuberosum HOM05D005588 ORTHO05D006615 2.0e-113 413.3 365 58.9
CsaV3_3G031490 Cucumis sativus L. HOM05D005588 ORTHO05D006615 4.5e-113 412.1 333 63.4
Medtr4g074600 Medicago truncatula HOM05D005588 ORTHO05D006615 5.9e-113 411.8 333 63.1
Sopen04g004500 Solanum pennellii HOM05D005588 ORTHO05D006615 7.7e-113 411.4 333 61.9
arahy.Tifrunner.gnm1.ann1.HXF7IN Arachis hypogaea HOM05D005588 ORTHO05D006615 1.3e-112 410.6 331 60.7
Glyma.09G281400 Glycine max HOM05D005588 ORTHO05D006615 1.3e-112 410.6 338 61.5
Lsat_1_v5_gn_3_33621 Lactuca sativa HOM05D005588 ORTHO05D006615 1.3e-112 410.6 370 56.5
MBI03_g24016_MAGBIO Magnolia biondii HOM05D005588 ORTHO05D006615 1.3e-112 410.6 338 64.2
Nitab4.5_0002392g0080 Nicotiana tabacum HOM05D005588 ORTHO05D006615 1.7e-112 410.2 336 63.1
Nitab4.5_0002113g0130 Nicotiana tabacum HOM05D005588 ORTHO05D006615 5.0e-112 408.7 374 55.3
TPR.G32342 Trifolium pratense HOM05D005588 ORTHO05D006615 5.0e-112 408.7 328 63.7
Psat6g098600 Pisum sativum HOM05D005588 ORTHO05D006615 1.1e-111 407.5 337 64.7
Atru.chr11.1235 Acer truncatum HOM05D005588 ORTHO05D006615 7.2e-111 404.8 332 61.4
MELO3C024032.2 Cucumis melo HOM05D005588 ORTHO05D006615 1.2e-110 404.1 333 63.1
ECA233G4991 Erigeron canadensis HOM05D005588 ORTHO05D006615 6.1e-110 401.7 339 60.5
Carub.0003s1840 Capsella rubella HOM05D005588 ORTHO05D006615 1.4e-109 400.6 342 61.7
CARHR094000 Cardamine hirsuta HOM05D005588 ORTHO05D006615 1.8e-109 400.2 339 61.1
Glyma.20G004400 Glycine max HOM05D005588 ORTHO05D006615 2.3e-109 399.8 338 60.4
Sp3g16690 Schrenkiella parvula HOM05D005588 ORTHO05D006615 3.9e-109 399.1 340 61.2
Solyc04g009380.3 Solanum lycopersicum HOM05D005588 ORTHO05D006615 5.1e-109 398.7 353 58.6
BcaB04g18995 Brassica carinata HOM05D005588 ORTHO05D006615 8.8e-109 397.9 339 60.8
AL3G31930 Arabidopsis lyrata HOM05D005588 ORTHO05D006615 1.1e-108 397.5 342 60.2
Medtr1g036390 Medicago truncatula HOM05D005588 ORTHO05D006615 1.5e-108 397.1 328 63.7
Lalb_Chr04g0258921 Lupinus albus HOM05D005588 ORTHO05D006615 3.3e-108 396.0 333 61.6
BcaC01g03687 Brassica carinata HOM05D005588 ORTHO05D006615 4.3e-108 395.6 339 60.2
C03p49620 Brassica napus HOM05D005588 ORTHO05D006615 4.3e-108 395.6 339 60.2
PGR142G3609 Punica granatum HOM05D005588 ORTHO05D006615 5.7e-108 395.2 330 61.5
THA.LOC104820416 Tarenaya hassleriana HOM05D005588 ORTHO05D006615 7.4e-108 394.8 336 61.6
ECA246G5122 Erigeron canadensis HOM05D005588 ORTHO05D006615 9.7e-108 394.4 339 59.9
BolC3t17260H Brassica oleracea HOM05D005588 ORTHO05D006615 1.3e-107 394.0 337 60.2
AT3G18620 Arabidopsis thaliana HOM05D005588 ORTHO05D006615 2.2e-107 393.3 342 59.9
A03p40750 Brassica napus HOM05D005588 ORTHO05D006615 2.8e-107 392.9 336 60.4
BraA03t13232Z Brassica rapa HOM05D005588 ORTHO05D006615 3.7e-107 392.5 336 60.4
Migut.A00690 Erythranthe guttata HOM05D005588 ORTHO05D006615 1.5e-105 387.1 337 58.5
SGA_v2.0_scaffold173G39109 Striga asiatica HOM05D005588 ORTHO05D006615 2.0e-105 386.7 330 60.0
FvH4_4g36750 Fragaria vesca HOM05D005588 ORTHO05D006615 2.9e-104 382.9 339 59.3
FAN17G1536 Fragaria x ananassa HOM05D005588 ORTHO05D006615 2.9e-104 382.9 339 59.3
Lsat_1_v5_gn_8_32400 Lactuca sativa HOM05D005588 ORTHO05D006615 2.9e-104 382.9 339 58.7
FAN07G0754 Fragaria x ananassa HOM05D005588 ORTHO05D006615 7.2e-103 378.3 339 58.7
Lalb_Chr17g0338031 Lupinus albus HOM05D005588 ORTHO05D006615 7.9e-102 374.8 333 60.7
Sed0008330 Sechium edule HOM05D005588 ORTHO05D006615 7.9e-102 374.8 333 58.9
Lj2g0013630 Lotus japonicus HOM05D005588 ORTHO05D006615 1.0e-101 374.4 313 60.4
HanXRQChr17g0540781 Helianthus annuus HOM05D005588 ORTHO05D006615 1.4e-101 374.0 339 59.3
MD16G1000700 Malus domestica HOM05D005588 ORTHO05D006615 3.0e-101 372.9 340 58.5
arahy.Tifrunner.gnm1.ann1.J0Y6Y5 Arachis hypogaea HOM05D005588 ORTHO05D006615 1.1e-100 370.9 351 55.6
Aa31LG8G5470 Aethionema arabicum HOM05D005588 ORTHO05D006615 7.4e-100 368.2 339 55.8
AUR62017670 Chenopodium quinoa HOM05D005588 ORTHO05D006615 9.1e-98 361.3 364 53.3
BcaC05g28591 Brassica carinata HOM05D005588 ORTHO05D006615 1.0e-96 357.8 337 55.8
C05p46980 Brassica napus HOM05D005588 ORTHO05D006615 1.0e-96 357.8 337 55.8
BolC5t33427H Brassica oleracea HOM05D005588 ORTHO05D006615 1.0e-96 357.8 337 55.8
BcaB06g25914 Brassica carinata HOM05D005588 ORTHO05D006615 6.5e-96 355.1 337 55.8
A05p30990 Brassica napus HOM05D005588 ORTHO05D006615 1.1e-95 354.4 337 55.8
CiPaw.09G164500 Carya illinoinensis HOM05D005588 ORTHO05D006615 1.1e-95 354.4 264 66.3
BraA05t21941Z Brassica rapa HOM05D005588 ORTHO05D006615 2.5e-95 353.2 337 55.5
TPR.G8237 Trifolium pratense HOM05D005588 ORTHO05D006615 2.5e-95 353.2 287 64.1
Gohir.D13G024600 Gossypium hirsutum HOM05D005588 ORTHO05D006615 5.5e-95 352.1 263 70.0
Sc10g0006750 Simmondsia chinensis HOM05D005588 ORTHO05D006615 1.2e-94 350.9 333 57.7
Zm00001eb433550 Zea mays HOM05D005588 ORTHO05D006615 2.1e-94 350.1 331 55.0
EL10Ac9g22925 Beta vulgaris HOM05D005588 ORTHO05D006615 8.8e-93 344.7 334 56.9
SalBow1G0039 Salvia bowleyana HOM05D005588 ORTHO05D006615 2.6e-92 343.2 333 56.5
arahy.Tifrunner.gnm1.ann1.8S5M3J Arachis hypogaea HOM05D005588 ORTHO05D006615 1.3e-91 340.9 335 58.5
Zm00001eb066460 Zea mays HOM05D005588 ORTHO05D006615 3.7e-91 339.3 331 54.1
arahy.Tifrunner.gnm1.ann1.7Y84RT Arachis hypogaea HOM05D005588 ORTHO05D006615 4.8e-91 339.0 335 58.2
CAN.G624.25 Capsicum annuum HOM05D005588 ORTHO05D006615 7.0e-90 335.1 283 62.5
HPP92_024425 Vanilla planifolia HOM05D005588 ORTHO05D006615 5.9e-89 332.0 330 52.1
Peaxi162Scf00363g00733 Petunia axillaris HOM05D005588 ORTHO05D006615 8.5e-88 328.2 338 52.4
Thhalv10021331m.g Eutrema salsugineum HOM05D005588 ORTHO05D006615 2.0e-81 307.0 268 61.9
Nitab4.5_0007261g0090 Nicotiana tabacum HOM05D005588 ORTHO05D006615 1.0e-80 304.7 340 48.8
Psat7g173520 Pisum sativum HOM05D005588 ORTHO05D006615 6.5e-80 302.0 271 60.5
Gorai.009G328100 Gossypium raimondii HOM05D005588 ORTHO05D006615 1.9e-79 300.4 244 63.5
Sabra07G0059300 Salix brachista HOM05D005588 ORTHO05D006615 1.2e-78 297.7 260 60.8
Hund00348 Selenicereus undatus HOM05D005588 ORTHO05D006615 2.7e-78 296.6 330 52.1
Gohir.A05G307500 Gossypium hirsutum HOM05D005588 ORTHO05D006615 1.8e-77 293.9 264 56.4
Os04g0674450 Oryza sativa ssp. japonica HOM05D005588 ORTHO05D006615 2.2e-75 287.0 292 53.4
ClCG10G011870 Citrullus lanatus HOM05D005588 ORTHO05D006615 1.2e-73 281.2 382 45.0
AUR62015207 Chenopodium quinoa HOM05D005588 ORTHO05D006615 3.5e-73 279.6 364 46.4
QL03p043796 Quercus lobata HOM05D005588 ORTHO05D006615 3.5e-73 279.6 166 76.5
TWI74G1417 Tripterygium wilfordii HOM05D005588 ORTHO05D006615 2.5e-71 273.5 166 75.9
ATR0626G258 Amborella trichopoda HOM05D005588 ORTHO05D006615 2.8e-70 270.0 338 48.8
Peaxi162Scf01172g00038 Petunia axillaris HOM05D005588 ORTHO05D006615 2.3e-69 266.9 341 46.6
CDE05G3190 Ceratophyllum demersum HOM05D005588 ORTHO05D006615 5.6e-63 245.7 205 62.9
MD13G1007300 Malus domestica HOM05D005588 ORTHO05D006615 2.1e-62 243.8 184 61.4
Sed0002544 Sechium edule HOM05D005588 ORTHO05D006615 6.8e-61 238.8 166 67.5
Gohir.D05G307832 Gossypium hirsutum HOM05D005588 ORTHO05D006615 1.3e-59 234.6 166 66.3
vmacro12413 Vaccinium macrocarpon HOM05D005588 ORTHO05D006615 5.0e-56 222.6 149 72.5
SalBow8G1527 Salvia bowleyana HOM05D005588 ORTHO05D006615 3.1e-53 213.4 331 40.5
Pp3c16_1360 Physcomitrium patens HOM05D005588 ORTHO05D006615 5.8e-52 209.1 326 36.8
Mapoly0055s0077 Marchantia polymorpha HOM05D005588 ORTHO05D006615 1.1e-50 204.9 321 36.4
Haze_19909 Corylus avellana HOM05D005588 ORTHO05D006615 7.0e-50 202.2 276 45.7
SMO146G0139 Selaginella moellendorffii HOM05D005588 ORTHO05D006615 7.8e-49 198.7 300 41.3
Pp3c13_19220 Physcomitrium patens HOM05D005588 ORTHO05D006615 1.7e-48 197.6 335 35.8
COL.COLO4_27672 Corchorus olitorius HOM05D005588 ORTHO05D006615 3.0e-48 196.8 163 59.5
SEGI_36505 Sequoiadendron giganteum HOM05D005588 ORTHO05D006615 2.5e-47 193.7 162 55.6
Nn4g24927 Nelumbo nucifera HOM05D005588 ORTHO05D006615 5.6e-47 192.6 281 44.8
MD13G1007400 Malus domestica HOM05D005588 ORTHO05D006615 5.2e-37 159.5 158 53.8
AagrBONN_evm.TU.Sc2ySwM_228.4026 Anthoceros agrestis HOM05D005588 ORTHO05D006615 2.6e-36 157.1 168 45.2
Ca_27076_v3 Cicer arietinum L. HOM05D005588 ORTHO05D006615 1.7e-35 154.5 94 73.4
TWI74G1107 Tripterygium wilfordii HOM05D005588 ORTHO05D006615 2.3e-32 144.1 107 66.4
DCAR_030400 Daucus carota HOM05D005588 ORTHO05D006615 4.8e-30 136.3 158 50.0
CBR_g50402 Chara braunii HOM05D005588 ORTHO05D006615 1.5e-23 114.8 261 31.4
Cpa.g.sc63.2 Carica papaya HOM05D007631 ORTHO05D009566 3.1e-21 107.1 109 61.5
Os06g0308900 Oryza sativa ssp. japonica HOM05D005588 ORTHO05D006615 3.1e-21 107.1 76 63.2
FAN12G1938 Fragaria x ananassa HOM05D005588 ORTHO05D006615 2.6e-20 104.0 72 63.9
AagrBONN_evm.TU.Sc2ySwM_362.2362 Anthoceros agrestis HOM05D005588 ORTHO05D006615 2.1e-17 94.4 81 45.7
SEGI_31391 Sequoiadendron giganteum HOM05D005588 ORTHO05D006615 4.2e-10 70.1 114 35.1
ATR0618G212 Amborella trichopoda HOM05D005588 ORTHO05D006615 1.5e-07 61.6 67 49.3


User provided reference genes

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