Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0004159 Camellia sinensis var. sinensis HOM05D006884 ORTHO05D008604 0.0e+00 1328.9 691 100.0
Actinidia07119 Actinidia chinensis HOM05D006884 ORTHO05D008604 0.0e+00 1097.4 677 82.6
vmacro03180 Vaccinium macrocarpon HOM05D006884 ORTHO05D008604 1.4e-311 1072.4 687 81.2
Hma1.2p1_0071F.1_g038150 Hydrangea macrophylla HOM05D006884 ORTHO05D008604 9.5e-295 1016.5 680 76.5
Cfa011353 Carpinus fangiana HOM05D006884 ORTHO05D008604 1.1e-290 1003.0 677 75.8
QL01p023227 Quercus lobata HOM05D006884 ORTHO05D008604 1.2e-289 999.6 678 75.5
GSVIVG01025156001 Vitis vinifera HOM05D006884 ORTHO05D008604 4.3e-287 991.1 677 75.2
Duzib168G2304 Durio zibethinus HOM05D006884 ORTHO05D008604 9.5e-287 989.9 680 74.9
Haze_23897 Corylus avellana HOM05D006884 ORTHO05D008604 3.0e-285 984.9 721 71.3
COL.COLO4_05186 Corchorus olitorius HOM05D006884 ORTHO05D008604 2.4e-282 975.3 679 73.9
CiPaw.13G108400 Carya illinoinensis HOM05D006884 ORTHO05D008604 1.0e-280 969.9 678 72.3
Atru.chr3.3680 Acer truncatum HOM05D006884 ORTHO05D008604 8.6e-280 966.8 678 72.0
Lj2C1032T7 Lonicera japonica HOM05D006884 ORTHO05D008604 4.3e-279 964.5 708 72.6
DCAR_018827 Daucus carota HOM05D006884 ORTHO05D008604 2.8e-278 961.8 675 73.2
Manes.04G024400 Manihot esculenta HOM05D006884 ORTHO05D008604 1.2e-276 956.4 678 72.1
Gohir.D13G225000 Gossypium hirsutum HOM05D006884 ORTHO05D008604 8.6e-272 940.3 681 71.1
Gorai.013G255800 Gossypium raimondii HOM05D006884 ORTHO05D008604 8.6e-272 940.3 681 71.1
Oeu005901.1 Olea europaea HOM05D006884 ORTHO05D008604 2.5e-271 938.7 699 70.2
Gohir.A13G221000 Gossypium hirsutum HOM05D006884 ORTHO05D008604 8.1e-270 933.7 681 70.5
Prupe.6G097500 Prunus persica HOM05D006884 ORTHO05D008604 3.1e-269 931.8 678 71.8
TAR369G0310 Trochodendron aralioides HOM05D006884 ORTHO05D008604 1.5e-268 929.5 680 70.6
Cc01_g11430 Coffea canephora HOM05D006884 ORTHO05D008604 4.4e-268 927.9 673 70.6
TWI38G0581 Tripterygium wilfordii HOM05D006884 ORTHO05D008604 1.6e-265 919.5 683 69.7
Peaxi162Scf00351g00322 Petunia axillaris HOM05D006884 ORTHO05D008604 8.6e-264 913.7 691 68.7
CANSAT54G0393 Cannabis sativa HOM05D006884 ORTHO05D008604 2.5e-263 912.1 682 69.2
Solyc11g069170.2 Solanum lycopersicum HOM05D006884 ORTHO05D008604 7.6e-260 900.6 676 69.1
Sopen11g027910 Solanum pennellii HOM05D006884 ORTHO05D008604 1.7e-259 899.4 676 69.1
MSTRG.12324 Avicennia marina HOM05D006884 ORTHO05D008604 2.2e-259 899.0 678 67.8
Potri.009G014900 Populus trichocarpa HOM05D006884 ORTHO05D008604 2.9e-259 898.7 677 69.1
TWI38G2405 Tripterygium wilfordii HOM05D006884 ORTHO05D008604 3.8e-259 898.3 683 69.1
PGR119G0543 Punica granatum HOM05D006884 ORTHO05D008604 6.4e-259 897.5 677 68.8
ClCG03G002300 Citrullus lanatus HOM05D006884 ORTHO05D008604 7.1e-258 894.0 679 66.9
Ciclev10027944m.g Citrus clementina HOM05D006884 ORTHO05D008604 4.6e-257 891.3 675 68.9
Migut.N02612 Erythranthe guttata HOM05D006884 ORTHO05D008604 2.3e-256 889.0 677 67.5
PGSC0003DMG400008066 Solanum tuberosum HOM05D006884 ORTHO05D008604 4.3e-255 884.8 717 65.4
Eucgr.J00944 Eucalyptus grandis HOM05D006884 ORTHO05D008604 4.7e-254 881.3 681 67.1
Nitab4.5_0000999g0100 Nicotiana tabacum HOM05D006884 ORTHO05D008604 8.1e-254 880.6 729 64.9
arahy.Tifrunner.gnm1.ann1.AY6ICH Arachis hypogaea HOM05D006884 ORTHO05D008604 1.5e-252 876.3 674 65.9
MELO3C005036.2 Cucumis melo HOM05D006884 ORTHO05D008604 3.5e-249 865.1 679 65.4
RcHm_v2.0_Chr5g0060051 Rosa chinensis HOM05D006884 ORTHO05D008604 3.5e-249 865.1 676 66.7
Aqoxy4G03234 Aquilegia oxysepala HOM05D006884 ORTHO05D008604 1.7e-248 862.8 682 66.1
Nitab4.5_0002186g0020 Nicotiana tabacum HOM05D006884 ORTHO05D008604 1.9e-247 859.4 631 71.2
Cpa.g.sc139.78 Carica papaya HOM05D006884 ORTHO05D008604 8.1e-246 854.0 601 72.9
HanXRQChr07g0197411 Helianthus annuus HOM05D006884 ORTHO05D008604 9.9e-244 847.0 673 66.3
Glyma.11G154214 Glycine max HOM05D006884 ORTHO05D008604 1.4e-242 843.2 688 63.1
Lalb_Chr01g0004191 Lupinus albus HOM05D006884 ORTHO05D008604 1.4e-242 843.2 675 64.9
Lj3g0026527 Lotus japonicus HOM05D006884 ORTHO05D008604 9.3e-242 840.5 677 64.0
FvH4_3g32920 Fragaria vesca HOM05D006884 ORTHO05D008604 4.6e-241 838.2 676 64.6
Phvul.011G073400 Phaseolus vulgaris HOM05D006884 ORTHO05D008604 6.0e-241 837.8 686 63.8
VMungo1127G0767 Vigna mungo HOM05D006884 ORTHO05D008604 2.3e-240 835.9 687 64.6
Sed0010984 Sechium edule HOM05D006884 ORTHO05D008604 8.7e-240 833.9 680 63.1
PSO063G0254 Papaver somniferum HOM05D006884 ORTHO05D008604 2.1e-238 829.3 682 63.8
FAN11G3181 Fragaria x ananassa HOM05D006884 ORTHO05D008604 1.4e-237 826.6 676 64.2
Psat7g223440 Pisum sativum HOM05D006884 ORTHO05D008604 5.3e-237 824.7 679 63.2
SGA_v2.0_scaffold2G00907 Striga asiatica HOM05D006884 ORTHO05D008604 9.0e-237 823.9 631 67.4
Medtr4g060500 Medicago truncatula HOM05D006884 ORTHO05D008604 2.0e-236 822.8 683 62.4
SalBow3G0672 Salvia bowleyana HOM05D006884 ORTHO05D008604 6.4e-235 817.8 678 63.6
ECA238G4524 Erigeron canadensis HOM05D006884 ORTHO05D008604 1.4e-234 816.6 667 64.2
FAN25G2544 Fragaria x ananassa HOM05D006884 ORTHO05D008604 1.6e-233 813.1 677 62.9
TPR.G15554 Trifolium pratense HOM05D006884 ORTHO05D008604 1.6e-233 813.1 681 62.1
Sc06g0010010 Simmondsia chinensis HOM05D006884 ORTHO05D008604 4.0e-229 798.5 678 62.5
Thhalv10006976m.g Eutrema salsugineum HOM05D006884 ORTHO05D008604 1.2e-228 797.0 682 61.6
THA.LOC104815748 Tarenaya hassleriana HOM05D006884 ORTHO05D008604 1.3e-227 793.5 681 60.9
Lsat_1_v5_gn_2_97900 Lactuca sativa HOM05D006884 ORTHO05D008604 6.5e-227 791.2 672 62.1
AT1G07970 Arabidopsis thaliana HOM05D006884 ORTHO05D008604 1.1e-226 790.4 685 61.5
Thecc.09G259000 Theobroma cacao HOM05D006884 ORTHO05D008604 1.4e-226 790.0 487 80.3
CARHR007750 Cardamine hirsuta HOM05D006884 ORTHO05D008604 6.0e-225 784.6 686 61.4
C05p05970 Brassica napus HOM05D006884 ORTHO05D008604 3.0e-224 782.3 682 60.9
Carub.0001s0732 Capsella rubella HOM05D006884 ORTHO05D008604 6.7e-224 781.2 683 60.8
BolC5t29358H Brassica oleracea HOM05D003203 ORTHO05D003526 1.5e-223 780.0 682 60.7
A06p05030 Brassica napus HOM05D006884 ORTHO05D008604 2.8e-222 775.8 682 60.0
arahy.Tifrunner.gnm1.ann1.H1W27A Arachis hypogaea HOM05D006884 ORTHO05D008604 1.1e-221 773.9 605 65.5
BraA06t23709Z Brassica rapa HOM05D006884 ORTHO05D008604 4.5e-220 768.5 682 59.5
Hund10472 Selenicereus undatus HOM05D006884 ORTHO05D008604 3.8e-219 765.4 675 61.8
AL1G18300 Arabidopsis lyrata HOM05D006884 ORTHO05D008604 6.5e-219 764.6 683 60.2
CAN.G631.5 Capsicum annuum HOM05D006884 ORTHO05D008604 4.2e-218 761.9 619 64.8
ATR0759G051 Amborella trichopoda HOM05D006884 ORTHO05D008604 1.8e-216 756.5 685 59.3
PSO339G1719 Papaver somniferum HOM05D006884 ORTHO05D008604 2.3e-216 756.1 603 65.2
Ca_19247_v3 Cicer arietinum L. HOM05D006884 ORTHO05D008604 2.2e-211 739.6 683 58.3
Aa31LG8G13130 Aethionema arabicum HOM05D006884 ORTHO05D008604 6.5e-211 738.0 674 58.3
AUR62025009 Chenopodium quinoa HOM05D006884 ORTHO05D008604 1.4e-210 736.9 678 59.4
BcaC05g24709 Brassica carinata HOM05D006884 ORTHO05D008604 5.5e-210 734.9 682 57.9
BcaB02g06701 Brassica carinata HOM05D006884 ORTHO05D008604 7.9e-209 731.1 661 59.0
MBI14_g07928_MAGBIO Magnolia biondii HOM05D006884 ORTHO05D008604 3.9e-208 728.8 605 64.1
Sabra09G0009400 Salix brachista HOM05D006884 ORTHO05D008604 9.7e-207 724.2 510 73.1
AUR62006527 Chenopodium quinoa HOM05D006884 ORTHO05D008604 2.0e-204 716.5 679 58.2
CsaV3_1G012990 Cucumis sativus L. HOM05D006884 ORTHO05D008604 1.2e-201 707.2 580 64.1
SEGI_12216 Sequoiadendron giganteum HOM05D006884 ORTHO05D008604 3.7e-190 669.1 714 52.2
HPP92_025089 Vanilla planifolia HOM05D006884 ORTHO05D008604 2.0e-188 663.3 684 54.1
Rhsim08G0043200 Rhododendron simsii HOM05D006884 ORTHO05D008604 8.0e-185 651.4 449 74.4
Zm00001eb397080 Zea mays HOM05D006884 ORTHO05D008604 7.5e-183 644.8 680 52.2
Os03g0288800 Oryza sativa ssp. japonica HOM05D006884 ORTHO05D008604 1.1e-181 641.0 680 52.4
CDE09G0273 Ceratophyllum demersum HOM05D006884 ORTHO05D008604 6.5e-179 631.7 637 54.5
Sp4g05030 Schrenkiella parvula HOM05D006884 ORTHO05D008604 1.3e-166 590.9 611 53.7
unitig_61.g26171 Utricularia gibba HOM05D006884 ORTHO05D008604 8.1e-153 545.0 616 50.8
Actinidia24083 Actinidia chinensis HOM05D006884 ORTHO05D008604 9.5e-146 521.5 302 82.1
Mapoly0043s0112 Marchantia polymorpha HOM05D006884 ORTHO05D008604 1.2e-143 514.6 703 45.2
SMO364G0331 Selaginella moellendorffii HOM05D006884 ORTHO05D008604 8.7e-139 498.4 464 54.7
Pp3c12_22070 Physcomitrium patens HOM05D006884 ORTHO05D008604 3.0e-131 473.4 705 42.7
arahy.Tifrunner.gnm1.ann1.REDW7M Arachis hypogaea HOM05D006884 ORTHO05D008604 3.0e-123 446.8 282 75.2
BcaB07g34161 Brassica carinata HOM05D006884 ORTHO05D008604 5.1e-115 419.5 358 58.1
Actinidia24084 Actinidia chinensis HOM05D006884 ORTHO05D008604 3.9e-107 393.3 304 73.7
Glyma.12G071233 Glycine max HOM05D006884 ORTHO05D008604 2.0e-71 274.6 219 62.6
Nn1g02428 Nelumbo nucifera HOM05D006884 ORTHO05D008604 4.1e-48 197.2 103 88.3
Nn1g02077 Nelumbo nucifera HOM05D006884 ORTHO05D008604 4.6e-47 193.7 103 87.4
Nn3g17897 Nelumbo nucifera HOM05D006884 ORTHO05D008604 7.3e-45 186.4 122 73.0
Nn4g22222 Nelumbo nucifera HOM05D006884 ORTHO05D008604 3.6e-44 184.1 99 84.8
SEGI_34075 Sequoiadendron giganteum HOM05D000114 ORTHO05D008604 6.0e-39 166.8 465 32.0
Nn4g22225 Nelumbo nucifera HOM05D006884 ORTHO05D008604 2.0e-34 151.8 102 70.6
Nn3g19002 Nelumbo nucifera HOM05D005115 ORTHO05D005703 1.3e-33 149.1 102 71.6
Glyma.12G071167 Glycine max HOM05D006884 ORTHO05D008604 2.4e-24 118.2 200 41.5
Nn1g05254 Nelumbo nucifera HOM05D006884 ORTHO05D008604 7.1e-16 90.1 63 71.4
Cre12.g555200 Chlamydomonas reinhardtii HOM05D006884 ORTHO05D008604 9.3e-16 89.7 326 25.2
Aa31LG3G16570 Aethionema arabicum HOM05D006884 ORTHO05D008604 1.3e-14 85.9 183 33.3
Nitab4.5_0002186g0030 Nicotiana tabacum HOM05D006884 ORTHO05D008604 4.8e-12 77.4 47 74.5
Nn1g03843 Nelumbo nucifera HOM05D006884 ORTHO05D008604 1.8e-11 75.5 65 61.5


User provided reference genes

Program Settings