Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0004156 Camellia sinensis var. sinensis HOM05D001890 ORTHO05D008163 9.6e-78 293.5 157 100.0
Actinidia03864 Actinidia chinensis HOM05D001890 ORTHO05D008163 2.3e-63 245.7 154 84.4
Actinidia03972 Actinidia chinensis HOM05D001890 ORTHO05D008163 2.3e-63 245.7 154 84.4
Dinv11885 Davidia involucrata HOM05D001890 ORTHO05D008163 1.1e-62 243.4 154 85.1
Hma1.2p1_2851F.1_g329460 Hydrangea macrophylla HOM05D001890 ORTHO05D008163 1.4e-60 236.5 153 81.7
Rhsim03G0062200 Rhododendron simsii HOM05D001890 ORTHO05D008163 3.1e-60 235.3 154 82.5
QL07p026864 Quercus lobata HOM05D001890 ORTHO05D008163 1.9e-57 226.1 153 77.8
GSVIVG01022555001 Vitis vinifera HOM05D001890 ORTHO05D008163 4.2e-57 224.9 154 77.3
Eucgr.A02558 Eucalyptus grandis HOM05D001890 ORTHO05D008163 7.2e-57 224.2 154 75.3
Cc06_g06850 Coffea canephora HOM05D001890 ORTHO05D008163 2.1e-56 222.6 154 74.0
Thecc.05G108500 Theobroma cacao HOM05D001890 ORTHO05D008163 1.3e-55 219.9 154 76.0
TWI74G0853 Tripterygium wilfordii HOM05D001890 ORTHO05D008163 3.0e-55 218.8 154 75.3
Haze_20108 Corylus avellana HOM05D001890 ORTHO05D008163 3.9e-55 218.4 154 75.3
CsaV3_3G038180 Cucumis sativus L. HOM05D001890 ORTHO05D008163 3.9e-55 218.4 154 75.3
Prupe.7G091100 Prunus persica HOM05D001890 ORTHO05D008163 5.1e-55 218.0 154 77.3
CiPaw.09G022900 Carya illinoinensis HOM05D001890 ORTHO05D008163 6.7e-55 217.6 154 75.3
Ciclev10012448m.g Citrus clementina HOM05D001890 ORTHO05D008163 8.7e-55 217.2 154 73.4
MELO3C009561.2 Cucumis melo HOM05D001890 ORTHO05D008163 8.7e-55 217.2 154 74.7
HanXRQChr02g0053101 Helianthus annuus HOM05D001890 ORTHO05D008163 1.1e-54 216.9 154 72.7
FAN09G2968 Fragaria x ananassa HOM05D001890 ORTHO05D008163 2.5e-54 215.7 152 73.7
Manes.08G036100 Manihot esculenta HOM05D001890 ORTHO05D008163 3.3e-54 215.3 154 72.7
Lsat_1_v5_gn_6_34681 Lactuca sativa HOM05D001890 ORTHO05D008163 7.4e-54 214.2 154 72.1
RcHm_v2.0_Chr3g0476751 Rosa chinensis HOM05D001890 ORTHO05D008163 1.3e-53 213.4 151 74.8
Sopen01g002850 Solanum pennellii HOM05D001890 ORTHO05D008163 1.6e-53 213.0 154 76.0
MD14G1043000 Malus domestica HOM05D001890 ORTHO05D008163 2.2e-53 212.6 152 73.7
TAR369G0922 Trochodendron aralioides HOM05D001890 ORTHO05D008163 2.2e-53 212.6 154 71.4
DCAR_013451 Daucus carota HOM05D001890 ORTHO05D008163 2.8e-53 212.2 154 72.7
arahy.Tifrunner.gnm1.ann1.XW59SW Arachis hypogaea HOM05D001890 ORTHO05D008163 4.8e-53 211.5 155 71.0
Gorai.002G233900 Gossypium raimondii HOM05D001890 ORTHO05D008163 4.8e-53 211.5 154 73.4
Potri.006G200900 Populus trichocarpa HOM05D001890 ORTHO05D008163 4.8e-53 211.5 155 74.8
Sed0014416 Sechium edule HOM05D001890 ORTHO05D008163 4.8e-53 211.5 154 72.1
arahy.Tifrunner.gnm1.ann1.59XBIZ Arachis hypogaea HOM05D001890 ORTHO05D008163 6.3e-53 211.1 154 70.1
Sc22g0003100 Simmondsia chinensis HOM05D001890 ORTHO05D008163 8.2e-53 210.7 153 73.2
Solyc01g006860.3 Solanum lycopersicum HOM05D001890 ORTHO05D008163 8.2e-53 210.7 154 75.3
PSO170G4460 Papaver somniferum HOM05D001890 ORTHO05D008163 1.1e-52 210.3 154 70.8
TPR.G21244 Trifolium pratense HOM05D001890 ORTHO05D003442 1.1e-52 210.3 154 71.4
AUR62036336 Chenopodium quinoa HOM05D001890 ORTHO05D008163 1.4e-52 209.9 157 70.1
PGSC0003DMG400021337 Solanum tuberosum HOM05D001890 ORTHO05D008163 1.4e-52 209.9 154 75.3
ECA233G0010 Erigeron canadensis HOM05D001890 ORTHO05D008163 1.8e-52 209.5 154 70.8
Atru.chr8.1300 Acer truncatum HOM05D001890 ORTHO05D008163 2.4e-52 209.1 154 70.1
FAN05G2088 Fragaria x ananassa HOM05D001890 ORTHO05D008163 2.4e-52 209.1 152 72.4
MD12G1044000 Malus domestica HOM05D001890 ORTHO05D008163 2.4e-52 209.1 153 71.9
Nn2g14391 Nelumbo nucifera HOM05D001890 ORTHO05D008163 3.1e-52 208.8 154 71.4
Sabra06G0154600 Salix brachista HOM05D001890 ORTHO05D008163 4.1e-52 208.4 156 73.1
Gohir.A01G200100 Gossypium hirsutum HOM05D001890 ORTHO05D008163 6.9e-52 207.6 154 72.7
Lalb_Chr06g0173221 Lupinus albus HOM05D001890 ORTHO05D008163 6.9e-52 207.6 154 70.8
FvH4_6g20780 Fragaria vesca HOM05D001890 ORTHO05D008163 9.1e-52 207.2 152 71.7
FAN14G3769 Fragaria x ananassa HOM05D001890 ORTHO05D008163 9.1e-52 207.2 152 71.7
Gohir.D01G190200 Gossypium hirsutum HOM05D001890 ORTHO05D008163 9.1e-52 207.2 154 72.1
vmacro07500 Vaccinium macrocarpon HOM05D001890 ORTHO05D008163 9.1e-52 207.2 168 70.8
RcHm_v2.0_Chr3g0476781 Rosa chinensis HOM05D001890 ORTHO05D008163 1.2e-51 206.8 152 72.4
MSTRG.19331 Avicennia marina HOM05D001890 ORTHO05D008163 1.5e-51 206.5 154 70.1
EL10Ac5g11823 Beta vulgaris HOM05D001890 ORTHO05D008163 2.0e-51 206.1 154 70.8
Hund10835 Selenicereus undatus HOM05D001890 ORTHO05D008163 3.4e-51 205.3 177 63.3
PSO407G0155 Papaver somniferum HOM05D001890 ORTHO05D008163 7.7e-51 204.1 154 70.1
Migut.J00743 Erythranthe guttata HOM05D001890 ORTHO05D008163 1.7e-50 203.0 154 68.8
Lj5g0002159 Lotus japonicus HOM05D001890 ORTHO05D008163 1.7e-50 203.0 153 68.6
Oeu045017.1 Olea europaea HOM05D001890 ORTHO05D008163 1.7e-50 203.0 154 69.5
CANSAT64G1416 Cannabis sativa HOM05D001890 ORTHO05D008163 3.8e-50 201.8 154 70.1
Glyma.02G193000 Glycine max HOM05D001890 ORTHO05D008163 3.8e-50 201.8 154 68.8
Ah.12g054380 Amaranthus hybridus HOM05D001890 ORTHO05D008163 8.5e-50 200.7 160 67.5
Aqoxy1G01947 Aquilegia oxysepala HOM05D001890 ORTHO05D008163 1.1e-49 200.3 154 67.5
Glyma.10G083800 Glycine max HOM05D001890 ORTHO05D008163 1.1e-49 200.3 154 68.8
Nitab4.5_0005218g0010 Nicotiana tabacum HOM05D001890 ORTHO05D008163 1.1e-49 200.3 153 73.2
Oeu020166.1 Olea europaea HOM05D001890 ORTHO05D008163 1.1e-49 200.3 154 68.8
SGA_v2.0_scaffold18G08441 Striga asiatica HOM05D001890 ORTHO05D008163 1.9e-49 199.5 152 67.8
Nitab4.5_0009788g0030 Nicotiana tabacum HOM05D001890 ORTHO05D008163 5.5e-49 198.0 153 71.9
FAN05G2830 Fragaria x ananassa HOM05D001890 ORTHO05D008163 7.2e-49 197.6 144 72.2
BolC9t59784H Brassica oleracea HOM05D001890 ORTHO05D008163 1.2e-48 196.8 155 64.5
MBI05_g37895_MAGBIO Magnolia biondii HOM05D001890 ORTHO05D008163 1.6e-48 196.4 149 67.8
THA.LOC104816627 Tarenaya hassleriana HOM05D001890 ORTHO05D008163 2.1e-48 196.1 154 64.3
COL.COLO4_29517 Corchorus olitorius HOM05D001890 ORTHO05D008163 2.7e-48 195.7 154 69.5
AL6G16500 Arabidopsis lyrata HOM05D001890 ORTHO05D008163 4.6e-48 194.9 154 64.9
BraA10t45037Z Brassica rapa HOM05D001890 ORTHO05D008163 6.1e-48 194.5 155 63.9
Aa31LG5G17190 Aethionema arabicum HOM05D001890 ORTHO05D008163 1.0e-47 193.7 154 64.3
AT5G06410 Arabidopsis thaliana HOM05D001890 ORTHO05D008163 1.0e-47 193.7 154 64.9
CARHR207150 Cardamine hirsuta HOM05D001890 ORTHO05D008163 1.8e-47 193.0 154 63.6
Thhalv10014422m.g Eutrema salsugineum HOM05D001890 ORTHO05D008163 1.8e-47 193.0 154 63.0
CAN.G911.27 Capsicum annuum HOM05D001890 ORTHO05D008163 5.1e-47 191.4 164 68.9
Zm00001eb161520 Zea mays HOM05D001890 ORTHO05D008163 8.8e-47 190.7 154 64.9
Medtr1g055300 Medicago truncatula HOM05D001890 ORTHO05D008163 1.1e-46 190.3 144 68.1
SHI39226 Sapria himalayana HOM05D001890 ORTHO05D008163 1.1e-46 190.3 154 64.3
VMungo0251G0199 Vigna mungo HOM05D001890 ORTHO05D008163 1.1e-46 190.3 154 64.9
Os12g0456200 Oryza sativa ssp. japonica HOM05D001890 ORTHO05D008163 1.5e-46 189.9 154 63.6
BcaB01g05992 Brassica carinata HOM05D001890 ORTHO05D008163 2.6e-46 189.1 154 62.3
Phvul.007G266300 Phaseolus vulgaris HOM05D001890 ORTHO05D008163 7.4e-46 187.6 154 64.9
C03p03150 Brassica napus HOM05D001890 ORTHO05D003442 9.7e-46 187.2 154 62.3
BolC3t12860H Brassica oleracea HOM05D001890 ORTHO05D003442 1.7e-45 186.4 154 61.7
BraA03t09635Z Brassica rapa HOM05D001890 ORTHO05D008163 1.7e-45 186.4 154 61.0
A03p02720 Brassica napus HOM05D001890 ORTHO05D008163 2.8e-45 185.7 154 61.0
HPP92_018252 Vanilla planifolia HOM05D001890 ORTHO05D008163 1.4e-44 183.3 154 63.0
ATR0697G265 Amborella trichopoda HOM05D001890 ORTHO05D008163 9.1e-44 180.6 154 62.3
SGA_v2.0_scaffold116G32259 Striga asiatica HOM05D001890 ORTHO05D008163 2.6e-43 179.1 179 55.9
unitig_578.g15805 Utricularia gibba HOM05D001890 ORTHO05D008163 5.9e-43 177.9 154 62.3
CDE06G1636 Ceratophyllum demersum HOM05D001890 ORTHO05D000511 1.3e-42 176.8 154 60.4
ClCG10G018120 Citrullus lanatus HOM05D001890 ORTHO05D008163 1.7e-42 176.4 154 63.6
Hma1.2p1_2851F.1_g329450 Hydrangea macrophylla HOM05D001890 ORTHO05D008163 1.2e-40 170.2 154 64.3
AUR62030695 Chenopodium quinoa HOM05D001890 ORTHO05D008163 5.7e-38 161.4 113 72.6
PGR004G2365 Punica granatum HOM05D001890 ORTHO05D008163 2.4e-36 156.0 154 59.7
Psat6g128200 Pisum sativum HOM05D001890 ORTHO05D008163 5.3e-36 154.8 181 51.9
SEGI_25149 Sequoiadendron giganteum HOM05D001890 ORTHO05D008163 7.0e-36 154.5 155 52.3
Dinv25069 Davidia involucrata HOM05D001890 ORTHO05D003442 2.0e-35 152.9 119 71.4
FAN02G4586 Fragaria x ananassa HOM05D001890 ORTHO05D003442 4.5e-35 151.8 117 70.1
Lj3C241T9 Lonicera japonica HOM05D001890 ORTHO05D008163 4.7e-32 141.7 88 83.0
Actinidia37766 Actinidia chinensis HOM05D001890 ORTHO05D008163 7.5e-30 134.4 85 83.5
AagrBONN_evm.TU.Sc2ySwM_117.1093 Anthoceros agrestis HOM05D001890 ORTHO05D008163 7.0e-28 127.9 155 46.5
Psat2g142840 Pisum sativum HOM05D001890 ORTHO05D008163 1.0e-26 124.0 82 74.4
Pp3c16_9340 Physcomitrium patens HOM05D001890 ORTHO05D008163 6.5e-26 121.3 141 50.4
Sp6g36440 Schrenkiella parvula HOM05D001890 ORTHO05D008163 1.6e-24 116.7 86 66.3
CBR_g70174 Chara braunii HOM05D001890 ORTHO05D008163 1.8e-23 113.2 158 43.7
Mapoly0055s0040 Marchantia polymorpha HOM05D001890 ORTHO05D008163 3.7e-21 105.5 154 40.9
Cpa.g.sc104.2 Carica papaya HOM05D001890 ORTHO05D008163 8.3e-21 104.4 63 82.5
Lj1g0015991 Lotus japonicus HOM05D001890 ORTHO05D008163 9.1e-20 100.9 82 67.1
SMO353G0218 Selaginella moellendorffii HOM05D001890 ORTHO05D008163 5.9e-19 98.2 123 39.0
Peaxi162Scf00675g00610 Petunia axillaris HOM05D001890 ORTHO05D008163 1.0e-18 97.4 64 76.6
Peaxi162Scf00675g00611 Petunia axillaris HOM05D001890 ORTHO05D008163 8.6e-18 94.4 100 59.0
Cre11.g467718 Chlamydomonas reinhardtii HOM05D001890 ORTHO05D008163 7.5e-14 81.3 154 36.4
Cre12.g507559 Chlamydomonas reinhardtii HOM05D001890 ORTHO05D008163 7.5e-14 81.3 154 36.4
CBR_g31284 Chara braunii HOM05D001890 ORTHO05D008163 2.4e-12 76.3 117 39.3
Lalb_Chr25g0282121 Lupinus albus HOM05D001890 ORTHO05D008163 8.6e-10 67.8 95 46.3
MCO10G285 Micromonas commoda HOM05D001890 ORTHO05D008163 8.0e-08 61.2 162 29.6
C04p10650 Brassica napus HOM05D001890 ORTHO05D008163 1.5e-06 57.0 30 80.0
Psat1g223560 Pisum sativum HOM05D001890 ORTHO05D008163 9.8e-06 54.3 37 67.6


User provided reference genes

Program Settings