Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0004145 Camellia sinensis var. sinensis HOM05D004918 ORTHO05D005706 5.8e-47 190.7 104 100.0
CSS0035645 Camellia sinensis var. sinensis HOM05D004918 ORTHO05D005706 9.9e-39 163.3 108 79.6
CSS0025832 Camellia sinensis var. sinensis HOM05D004918 ORTHO05D005706 1.8e-27 125.9 110 66.4
Rhsim08G0203200 Rhododendron simsii HOM05D004918 ORTHO05D005706 4.1e-24 114.8 98 62.2
Actinidia25464 Actinidia chinensis HOM05D004918 ORTHO05D005706 2.0e-23 112.5 107 59.8
vmacro19072 Vaccinium macrocarpon HOM05D004918 ORTHO05D005706 1.9e-21 105.9 75 73.3
Dinv23270 Davidia involucrata HOM05D004918 ORTHO05D005706 7.4e-18 94.0 111 49.5
Manes.11G069000 Manihot esculenta HOM05D004918 ORTHO05D005706 9.7e-18 93.6 107 47.7
TAR625G0238 Trochodendron aralioides HOM05D004918 ORTHO05D005706 6.3e-17 90.9 77 58.4
DCAR_025541 Daucus carota HOM05D004918 ORTHO05D005706 4.1e-16 88.2 75 58.7
Nn2g12451 Nelumbo nucifera HOM05D004918 ORTHO05D005706 4.1e-16 88.2 78 55.1
Prupe.3G103300 Prunus persica HOM05D004918 ORTHO05D005706 4.1e-16 88.2 105 45.7
Hma1.2p1_1914F.1_g307380 Hydrangea macrophylla HOM05D004918 ORTHO05D005706 9.0e-16 87.0 77 57.1
Cpa.g.sc14.108 Carica papaya HOM05D004918 ORTHO05D005706 1.5e-15 86.3 79 53.2
Oeu004556.1 Olea europaea HOM05D004918 ORTHO05D005706 2.0e-15 85.9 77 53.2
Nn2g14031 Nelumbo nucifera HOM05D004918 ORTHO05D005706 2.6e-15 85.5 78 52.6
Atru.chr8.1159 Acer truncatum HOM05D004918 ORTHO05D005706 5.9e-15 84.3 77 54.5
Cc04_g05650 Coffea canephora HOM05D004918 ORTHO05D005706 7.7e-15 84.0 105 42.9
Ciclev10026430m.g Citrus clementina HOM05D004918 ORTHO05D005706 1.0e-14 83.6 77 54.5
Atru.chr1.2801 Acer truncatum HOM05D004918 ORTHO05D005706 1.7e-14 82.8 77 54.5
TPR.G15094 Trifolium pratense HOM05D004918 ORTHO05D005706 1.7e-14 82.8 77 54.5
GSVIVG01016107001 Vitis vinifera HOM05D004918 ORTHO05D005706 1.7e-14 82.8 107 42.1
PGR102G0155 Punica granatum HOM05D004918 ORTHO05D005706 2.9e-14 82.0 104 45.2
Nitab4.5_0004738g0120 Nicotiana tabacum HOM05D004918 ORTHO05D005706 5.0e-14 81.3 107 43.9
Medtr3g110270 Medicago truncatula HOM05D004918 ORTHO05D005706 8.5e-14 80.5 77 51.9
Nitab4.5_0002700g0180 Nicotiana tabacum HOM05D004918 ORTHO05D005706 1.4e-13 79.7 107 43.9
Oeu035883.1 Olea europaea HOM05D004918 ORTHO05D005706 1.4e-13 79.7 106 42.5
Thecc.06G046100 Theobroma cacao HOM05D004918 ORTHO05D005706 1.4e-13 79.7 77 49.4
CiPaw.02G163500 Carya illinoinensis HOM05D004918 ORTHO05D005706 2.5e-13 79.0 77 54.5
Lj6g0018730 Lotus japonicus HOM05D004918 ORTHO05D005706 2.5e-13 79.0 79 49.4
RcHm_v2.0_Chr2g0132361 Rosa chinensis HOM05D004918 ORTHO05D005706 2.5e-13 79.0 77 48.1
ClCG10G012810 Citrullus lanatus HOM05D004918 ORTHO05D005706 3.2e-13 78.6 107 43.0
Cc04_g05280 Coffea canephora HOM05D004918 ORTHO05D005706 4.2e-13 78.2 78 50.0
Lsat_1_v5_gn_4_85101 Lactuca sativa HOM05D004918 ORTHO05D005706 5.5e-13 77.8 77 51.9
Sc05g0005820 Simmondsia chinensis HOM05D004918 ORTHO05D005706 5.5e-13 77.8 76 51.3
CiPaw.01G073400 Carya illinoinensis HOM05D004918 ORTHO05D005706 7.2e-13 77.4 79 54.4
FAN09G4697 Fragaria x ananassa HOM05D004918 ORTHO05D005706 7.2e-13 77.4 79 48.1
MD12G1013200 Malus domestica HOM05D004918 ORTHO05D005706 7.2e-13 77.4 77 51.9
FvH4_6g28300 Fragaria vesca HOM05D004918 ORTHO05D005706 9.4e-13 77.0 107 39.3
VMungo1309G0542 Vigna mungo HOM05D004918 ORTHO05D005706 9.4e-13 77.0 77 49.4
Peaxi162Scf00314g01045 Petunia axillaris HOM05D004918 ORTHO05D005706 1.2e-12 76.6 108 42.6
Potri.003G184701 Populus trichocarpa HOM05D004918 ORTHO05D005706 1.6e-12 76.3 106 44.3
MBI19_g12142_MAGBIO Magnolia biondii HOM05D004918 ORTHO05D005706 2.7e-12 75.5 77 48.1
MD14G1138800 Malus domestica HOM05D004918 ORTHO05D005706 2.7e-12 75.5 79 49.4
AT1G16040 Arabidopsis thaliana HOM05D004918 ORTHO05D005706 3.6e-12 75.1 78 50.0
Cfa001859 Carpinus fangiana HOM05D004918 ORTHO05D005706 3.6e-12 75.1 79 51.9
MELO3C000966.2 Cucumis melo HOM05D004918 ORTHO05D005706 3.6e-12 75.1 108 41.7
Lalb_Chr13g0301111 Lupinus albus HOM05D004918 ORTHO05D005706 3.6e-12 75.1 107 39.3
Psat5g020280 Pisum sativum HOM05D004918 ORTHO05D005706 3.6e-12 75.1 79 46.8
Migut.I00673 Erythranthe guttata HOM05D004918 ORTHO05D005706 4.6e-12 74.7 77 51.9
Duzib192G0308 Durio zibethinus HOM05D004918 ORTHO05D005706 6.1e-12 74.3 77 46.8
MELO3C028676.2 Cucumis melo HOM05D004918 ORTHO05D005706 7.9e-12 73.9 107 41.1
HanXRQChr16g0499441 Helianthus annuus HOM05D004918 ORTHO05D005706 7.9e-12 73.9 75 49.3
AL1G28210 Arabidopsis lyrata HOM05D004918 ORTHO05D005706 1.0e-11 73.6 76 52.6
Sed0005872 Sechium edule HOM05D004918 ORTHO05D005706 1.0e-11 73.6 108 42.6
Solyc03g117650.4 Solanum lycopersicum HOM05D004918 ORTHO05D005706 1.0e-11 73.6 78 50.0
ECA232G4560 Erigeron canadensis HOM05D004918 ORTHO05D005706 1.4e-11 73.2 77 48.1
PSO063G6564 Papaver somniferum HOM05D004918 ORTHO05D005706 1.8e-11 72.8 76 46.1
FAN02G2144 Fragaria x ananassa HOM05D004918 ORTHO05D005706 3.0e-11 72.0 107 38.3
Sabra03G0135200 Salix brachista HOM05D004918 ORTHO05D005706 3.0e-11 72.0 77 51.9
CsaV3_3G032650 Cucumis sativus L. HOM05D004918 ORTHO05D005706 3.9e-11 71.6 77 49.4
Gorai.009G122300 Gossypium raimondii HOM05D004918 ORTHO05D005706 3.9e-11 71.6 77 42.9
HanXRQChr17g0561891 Helianthus annuus HOM05D004918 ORTHO05D005706 3.9e-11 71.6 77 48.1
Sopen03g036560 Solanum pennellii HOM05D004918 ORTHO05D005706 3.9e-11 71.6 107 40.2
TWI12G0375 Tripterygium wilfordii HOM05D004918 ORTHO05D005706 3.9e-11 71.6 77 48.1
MSTRG.22808 Avicennia marina HOM05D004918 ORTHO05D005706 5.1e-11 71.2 77 48.1
Ah.01g002790 Amaranthus hybridus HOM05D004918 ORTHO05D005706 6.7e-11 70.9 75 49.3
Glyma.09G000800 Glycine max HOM05D004918 ORTHO05D005706 8.8e-11 70.5 79 43.0
Aa31LG7G620 Aethionema arabicum HOM05D004918 ORTHO05D005706 1.1e-10 70.1 106 40.6
PSO017G2949 Papaver somniferum HOM05D004918 ORTHO05D005706 1.1e-10 70.1 76 46.1
PSO724G0600 Papaver somniferum HOM05D004918 ORTHO05D005706 1.1e-10 70.1 76 46.1
PSO729G0217 Papaver somniferum HOM05D004918 ORTHO05D005706 1.1e-10 70.1 76 46.1
Carub.0001s1585 Capsella rubella HOM05D004918 ORTHO05D005706 1.5e-10 69.7 76 51.3
Gohir.A05G117500 Gossypium hirsutum HOM05D004918 ORTHO05D005706 1.5e-10 69.7 77 41.6
PGSC0003DMG400014153 Solanum tuberosum HOM05D004918 ORTHO05D005706 1.5e-10 69.7 77 49.4
Gohir.D05G118400 Gossypium hirsutum HOM05D004918 ORTHO05D005706 2.0e-10 69.3 77 41.6
CDE02G0643 Ceratophyllum demersum HOM05D004918 ORTHO05D005706 2.5e-10 68.9 79 44.3
Phvul.009G194500 Phaseolus vulgaris HOM05D004918 ORTHO05D005706 2.5e-10 68.9 77 42.9
CARHR016550 Cardamine hirsuta HOM05D004918 ORTHO05D005706 4.3e-10 68.2 109 43.1
THA.LOC104808174 Tarenaya hassleriana HOM05D004918 ORTHO05D005706 4.3e-10 68.2 76 44.7
QL10p031453 Quercus lobata HOM05D004918 ORTHO05D005706 7.4e-10 67.4 61 55.7
arahy.Tifrunner.gnm1.ann1.T9YNFF Arachis hypogaea HOM05D004918 ORTHO05D005706 9.7e-10 67.0 77 45.5
EL10Ac4g09605 Beta vulgaris HOM05D004918 ORTHO05D005706 1.3e-09 66.6 76 46.1
THA.LOC104812419 Tarenaya hassleriana HOM05D004918 ORTHO05D005706 1.3e-09 66.6 77 40.3
arahy.Tifrunner.gnm1.ann1.BN6NH6 Arachis hypogaea HOM05D004918 ORTHO05D005706 1.7e-09 66.2 77 44.2
arahy.Tifrunner.gnm1.ann1.U5XJV3 Arachis hypogaea HOM05D004918 ORTHO05D005706 1.7e-09 66.2 77 44.2
arahy.Tifrunner.gnm1.ann1.ZUNL57 Arachis hypogaea HOM05D004918 ORTHO05D005706 1.7e-09 66.2 77 44.2
Thhalv10008658m.g Eutrema salsugineum HOM05D004918 ORTHO05D005706 2.2e-09 65.9 106 39.6
Eucgr.F03982 Eucalyptus grandis HOM05D004918 ORTHO05D005706 2.8e-09 65.5 77 51.9
Sed0025979 Sechium edule HOM05D004918 ORTHO05D005706 2.8e-09 65.5 104 37.5
SalBow8G2778 Salvia bowleyana HOM05D004918 ORTHO05D005706 4.1e-08 61.6 74 45.9
SalBow8G2909 Salvia bowleyana HOM05D004918 ORTHO05D005706 4.1e-08 61.6 74 45.9
C08p44630 Brassica napus HOM05D000031 ORTHO05D007294 5.3e-08 61.2 76 47.4
CANSAT35G0550 Cannabis sativa HOM05D004918 ORTHO05D005706 5.3e-08 61.2 74 43.2
A08p31410 Brassica napus HOM05D004918 ORTHO05D005706 6.9e-08 60.8 76 47.4
BraA08t35064Z Brassica rapa HOM05D004918 ORTHO05D005706 6.9e-08 60.8 76 47.4
C08p17380 Brassica napus HOM05D004918 ORTHO05D005706 9.1e-08 60.5 76 47.4
BolC8t49364H Brassica oleracea HOM05D004918 ORTHO05D005706 9.1e-08 60.5 76 47.4
BcaB02g06654 Brassica carinata HOM05D004918 ORTHO05D005706 1.2e-07 60.1 76 46.1
BcaC07g38802 Brassica carinata HOM05D004918 ORTHO05D005706 1.2e-07 60.1 76 46.1
BolC8t52009H Brassica oleracea HOM05D000031 ORTHO05D007294 1.2e-07 60.1 77 45.5
BraA06t24376Z Brassica rapa HOM05D004918 ORTHO05D005706 1.2e-07 60.1 77 46.8
BcaB03g14507 Brassica carinata HOM05D004918 ORTHO05D005706 2.0e-07 59.3 76 46.1
A06p12070 Brassica napus HOM05D004918 ORTHO05D005706 2.0e-07 59.3 76 46.1
BcaB03g13048 Brassica carinata HOM05D004918 ORTHO05D005706 3.4e-07 58.5 106 37.7
BolC5t30156H Brassica oleracea HOM05D004918 ORTHO05D005706 3.4e-07 58.5 74 47.3
COL.COLO4_24896 Corchorus olitorius HOM05D004918 ORTHO05D005706 4.5e-07 58.2 75 40.0
BcaC05g25623 Brassica carinata HOM05D004918 ORTHO05D005706 7.7e-07 57.4 73 47.9
C05p14240 Brassica napus HOM05D004918 ORTHO05D005706 7.7e-07 57.4 73 47.9
SGA_v2.0_scaffold419G51286 Striga asiatica HOM05D004918 ORTHO05D005706 7.7e-07 57.4 73 42.5
FAN09G3573 Fragaria x ananassa HOM05D004918 ORTHO05D005706 1.3e-06 56.6 86 37.2
HanXRQChr10g0298641 Helianthus annuus HOM05D004918 ORTHO05D005706 1.7e-06 56.2 77 42.9
Os03g0129000 Oryza sativa ssp. japonica HOM05D004918 ORTHO05D005706 2.2e-06 55.8 79 39.2
Sp1g14360 Schrenkiella parvula HOM05D004918 ORTHO05D005706 2.2e-06 55.8 106 39.6
A09p61040 Brassica napus HOM05D004918 ORTHO05D005706 2.9e-06 55.5 79 41.8
BraA09t41477Z Brassica rapa HOM05D004918 ORTHO05D005706 2.9e-06 55.5 79 41.8
SEGI_14369 Sequoiadendron giganteum HOM05D004918 ORTHO05D005706 8.5e-06 53.9 73 35.6


User provided reference genes

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