Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0004144 Camellia sinensis var. sinensis HOM05D005806 ORTHO05D007119 4.0e-241 837.8 465 100.0
CSS0038808 Camellia sinensis var. sinensis HOM05D005806 ORTHO05D007119 4.9e-239 830.9 465 98.3
CSS0028282 Camellia sinensis var. sinensis HOM05D005806 ORTHO05D007119 6.6e-159 564.7 492 67.5
Actinidia40301 Actinidia chinensis HOM05D005806 ORTHO05D007119 2.2e-138 496.5 435 66.0
Dinv44345 Davidia involucrata HOM05D005806 ORTHO05D007119 2.8e-133 479.6 443 65.9
Lj3A825T23 Lonicera japonica HOM05D005806 ORTHO05D007119 3.7e-133 479.2 507 61.9
GSVIVG01035100001 Vitis vinifera HOM05D005806 ORTHO05D007119 2.5e-129 466.5 474 65.0
vmacro23238 Vaccinium macrocarpon HOM05D005806 ORTHO05D007119 7.9e-128 461.5 544 53.1
Sopen01g027600 Solanum pennellii HOM05D005806 ORTHO05D007119 9.6e-126 454.5 531 53.3
Solyc01g066050.3 Solanum lycopersicum HOM05D005806 ORTHO05D007119 1.8e-124 450.3 531 52.9
TAR365G0056 Trochodendron aralioides HOM05D005806 ORTHO05D007119 2.6e-123 446.4 491 59.3
TAR365G0831 Trochodendron aralioides HOM05D005806 ORTHO05D007119 1.7e-122 443.7 494 59.1
Manes.03G199200 Manihot esculenta HOM05D005806 ORTHO05D007119 7.9e-120 434.9 505 59.4
CAN.G14.19 Capsicum annuum HOM05D005806 ORTHO05D007119 1.1e-118 431.0 495 60.0
Cpa.g.sc50.151 Carica papaya HOM05D005806 ORTHO05D007119 2.5e-118 429.9 499 59.9
COL.COLO4_13808 Corchorus olitorius HOM05D005806 ORTHO05D007119 7.4e-118 428.3 520 57.1
PGSC0003DMG400016813 Solanum tuberosum HOM05D005806 ORTHO05D007119 2.8e-117 426.4 501 53.5
Manes.15G010100 Manihot esculenta HOM05D005806 ORTHO05D007119 2.4e-116 423.3 500 57.6
QL06p010760 Quercus lobata HOM05D005806 ORTHO05D007119 6.9e-116 421.8 512 58.8
AUR62018055 Chenopodium quinoa HOM05D005806 ORTHO05D007119 3.4e-115 419.5 507 53.1
Sed0007282 Sechium edule HOM05D005806 ORTHO05D007119 1.0e-114 417.9 497 56.9
Prupe.1G130400 Prunus persica HOM05D005806 ORTHO05D007119 1.3e-114 417.5 506 56.5
TWI09G1342 Tripterygium wilfordii HOM05D005806 ORTHO05D007119 7.2e-113 411.8 485 54.8
CiPaw.01G145000 Carya illinoinensis HOM05D005806 ORTHO05D007119 7.9e-112 408.3 467 60.4
MD16G1163000 Malus domestica HOM05D005806 ORTHO05D007119 1.8e-111 407.1 500 53.8
Nitab4.5_0012392g0010 Nicotiana tabacum HOM05D005806 ORTHO05D007119 2.3e-111 406.8 475 55.2
Lsat_1_v5_gn_6_78121 Lactuca sativa HOM05D005806 ORTHO05D007119 3.0e-111 406.4 506 52.8
Thecc.04G290100 Theobroma cacao HOM05D005806 ORTHO05D007119 3.0e-111 406.4 505 53.3
Cfa015433 Carpinus fangiana HOM05D005806 ORTHO05D007119 5.1e-111 405.6 514 56.8
DCAR_002485 Daucus carota HOM05D005806 ORTHO05D007119 5.1e-111 405.6 483 54.9
ClCG05G006280 Citrullus lanatus HOM05D005806 ORTHO05D007119 1.1e-110 404.4 497 51.7
Duzib151G0580 Durio zibethinus HOM05D005806 ORTHO05D007119 1.1e-110 404.4 509 52.1
Duzib212G0552 Durio zibethinus HOM05D005806 ORTHO05D007119 1.1e-110 404.4 494 53.0
Ciclev10004804m.g Citrus clementina HOM05D005806 ORTHO05D007119 1.5e-110 404.1 505 57.2
Haze_01151 Corylus avellana HOM05D005806 ORTHO05D007119 4.3e-110 402.5 471 60.5
Nn4g25745 Nelumbo nucifera HOM05D005806 ORTHO05D007119 7.4e-110 401.7 506 50.6
Oeu054004.1 Olea europaea HOM05D005806 ORTHO05D007119 1.3e-109 401.0 476 59.2
RcHm_v2.0_Chr4g0423561 Rosa chinensis HOM05D005806 ORTHO05D007119 1.7e-109 400.6 502 57.6
Atru.chr4.2914 Acer truncatum HOM05D005806 ORTHO05D007119 2.2e-109 400.2 480 52.9
HanXRQChr03g0084151 Helianthus annuus HOM05D005806 ORTHO05D007119 1.1e-108 397.9 540 48.5
Eucgr.B01574 Eucalyptus grandis HOM05D005806 ORTHO05D007119 6.9e-108 395.2 507 55.0
EL10Ac3g06659 Beta vulgaris HOM05D005806 ORTHO05D007119 9.1e-108 394.8 473 53.9
Potri.010G007000 Populus trichocarpa HOM05D005806 ORTHO05D007119 1.2e-107 394.4 501 57.5
Nitab4.5_0002215g0010 Nicotiana tabacum HOM05D005806 ORTHO05D007119 7.7e-107 391.7 518 52.1
Sabra10G0005700 Salix brachista HOM05D005806 ORTHO05D007119 2.2e-106 390.2 501 55.9
Hund20516 Selenicereus undatus HOM05D005806 ORTHO05D007119 2.2e-106 390.2 469 54.6
Cc03_g01460 Coffea canephora HOM05D005806 ORTHO05D007119 2.5e-105 386.7 509 49.7
Oeu006424.1 Olea europaea HOM05D005806 ORTHO05D007119 2.5e-105 386.7 495 56.8
FvH4_4g18770 Fragaria vesca HOM05D005806 ORTHO05D007119 3.2e-105 386.3 494 52.6
FAN12G2548 Fragaria x ananassa HOM05D005806 ORTHO05D007119 3.2e-105 386.3 494 52.6
FAN12G3921 Fragaria x ananassa HOM05D005806 ORTHO05D007119 3.2e-105 386.3 494 52.6
Ah.13g074780 Amaranthus hybridus HOM05D005806 ORTHO05D007119 5.5e-105 385.6 479 51.8
Peaxi162Scf00065g01121 Petunia axillaris HOM05D005806 ORTHO05D007119 6.1e-104 382.1 524 51.3
FAN17G0801 Fragaria x ananassa HOM05D005806 ORTHO05D007119 7.9e-104 381.7 500 52.4
MBI18_g21793_MAGBIO Magnolia biondii HOM05D005806 ORTHO05D007119 3.3e-102 376.3 481 55.7
MELO3C006687.2 Cucumis melo HOM05D005806 ORTHO05D007119 1.7e-101 374.0 494 55.1
Sc13g0003160 Simmondsia chinensis HOM05D005806 ORTHO05D007119 1.7e-101 374.0 449 54.6
Aqoxy5G00792 Aquilegia oxysepala HOM05D005806 ORTHO05D007119 2.4e-100 370.2 493 49.9
arahy.Tifrunner.gnm1.ann1.TZ6N57 Arachis hypogaea HOM05D005806 ORTHO05D007119 1.2e-99 367.9 500 49.6
Nn3g21558 Nelumbo nucifera HOM05D005806 ORTHO05D007119 1.2e-99 367.9 467 56.3
FAN07G1609 Fragaria x ananassa HOM05D005806 ORTHO05D007119 4.5e-99 365.9 484 51.2
Gohir.D10G172900 Gossypium hirsutum HOM05D005806 ORTHO05D007119 7.7e-99 365.2 533 53.5
Gorai.011G193400 Gossypium raimondii HOM05D005806 ORTHO05D007119 7.7e-99 365.2 533 49.0
TWI73G0620 Tripterygium wilfordii HOM05D005806 ORTHO05D007119 3.8e-98 362.8 468 51.3
CARHR092010 Cardamine hirsuta HOM05D005806 ORTHO05D007119 4.7e-96 355.9 495 49.7
THA.LOC104802587 Tarenaya hassleriana HOM05D005806 ORTHO05D007119 4.7e-96 355.9 512 52.9
MSTRG.10119 Avicennia marina HOM05D005806 ORTHO05D007119 1.4e-95 354.4 478 56.7
Dinv29717 Davidia involucrata HOM05D005806 ORTHO05D007119 1.4e-95 354.4 283 76.3
AT3G16760 Arabidopsis thaliana HOM05D005806 ORTHO05D007119 1.8e-95 354.0 488 49.0
VMungo1215G2854 Vigna mungo HOM05D005806 ORTHO05D007119 5.2e-95 352.4 435 51.3
CANSAT78G0145 Cannabis sativa HOM05D005806 ORTHO05D007119 7.5e-94 348.6 492 53.7
ECA240G3979 Erigeron canadensis HOM05D005806 ORTHO05D007119 2.8e-93 346.7 417 51.6
SGA_v2.0_scaffold91G28032 Striga asiatica HOM05D005806 ORTHO05D007119 6.3e-93 345.5 501 47.9
Carub.0003s1647 Capsella rubella HOM05D005806 ORTHO05D007119 1.8e-92 344.0 507 48.3
CsaV3_3G014910 Cucumis sativus L. HOM05D005806 ORTHO05D007119 1.8e-92 344.0 438 51.4
Glyma.17G028900 Glycine max HOM05D005806 ORTHO05D007119 1.8e-92 344.0 467 50.5
Aa31LG8G3830 Aethionema arabicum HOM05D005806 ORTHO05D007119 4.1e-92 342.8 504 45.2
Sp3g15010 Schrenkiella parvula HOM05D005806 ORTHO05D007119 1.6e-91 340.9 507 46.7
Glyma.07G244900 Glycine max HOM05D005806 ORTHO05D007119 3.8e-90 336.3 440 49.8
PGR031G2493 Punica granatum HOM05D005806 ORTHO05D007119 6.5e-90 335.5 474 55.1
Phvul.003G107800 Phaseolus vulgaris HOM05D005806 ORTHO05D007119 1.1e-89 334.7 440 55.0
SalBow5G0238 Salvia bowleyana HOM05D005806 ORTHO05D007119 7.2e-89 332.0 557 46.0
PSO832G4515 Papaver somniferum HOM05D005806 ORTHO05D007119 6.1e-88 328.9 442 54.1
Lj4g0013254 Lotus japonicus HOM05D005806 ORTHO05D007119 1.5e-86 324.3 476 53.6
PSO210G6439 Papaver somniferum HOM05D005806 ORTHO05D007119 5.7e-86 322.4 442 54.1
Gohir.A10G166900 Gossypium hirsutum HOM05D005806 ORTHO05D007119 2.2e-85 320.5 479 52.4
Migut.N00070 Erythranthe guttata HOM05D005806 ORTHO05D007119 3.7e-85 319.7 484 46.7
BolC1t04724H Brassica oleracea HOM05D005806 ORTHO05D007119 4.8e-85 319.3 494 47.0
Ca_21476_v3 Cicer arietinum L. HOM05D005806 ORTHO05D007119 4.8e-85 319.3 472 49.2
Thhalv10020624m.g Eutrema salsugineum HOM05D005806 ORTHO05D007119 6.3e-85 318.9 501 46.5
Medtr4g120360 Medicago truncatula HOM05D005806 ORTHO05D007119 1.4e-84 317.8 470 47.4
BraA01t03813Z Brassica rapa HOM05D005806 ORTHO05D007119 3.1e-84 316.6 486 50.0
Lalb_Chr07g0182271 Lupinus albus HOM05D005806 ORTHO05D007119 7.0e-84 315.5 468 51.5
C01p47550 Brassica napus HOM05D005806 ORTHO05D007119 3.5e-83 313.2 494 46.4
BcaC09g48634 Brassica carinata HOM05D005806 ORTHO05D007119 3.8e-82 309.7 486 49.6
A01p37530 Brassica napus HOM05D005806 ORTHO05D007119 1.2e-80 304.7 485 47.8
TAR633G1904 Trochodendron aralioides HOM05D005806 ORTHO05D007119 2.3e-79 300.4 290 57.9
TAR362G1179 Trochodendron aralioides HOM05D005806 ORTHO05D007119 5.7e-78 295.8 328 61.6
CDE12G0749 Ceratophyllum demersum HOM05D005806 ORTHO05D007119 3.3e-73 280.0 507 43.2
AUR62015254 Chenopodium quinoa HOM05D005806 ORTHO05D007119 7.3e-73 278.9 289 56.1
Psat4g025560 Pisum sativum HOM05D005806 ORTHO05D007119 1.7e-69 267.7 448 43.8
HPP92_002231 Vanilla planifolia HOM05D005806 ORTHO05D007119 1.7e-69 267.7 423 43.5
arahy.Tifrunner.gnm1.ann1.T7VR84 Arachis hypogaea HOM05D005806 ORTHO05D007119 1.3e-66 258.1 298 54.7
Os03g0340700 Oryza sativa ssp. japonica HOM05D005806 ORTHO05D007119 4.7e-64 249.6 494 39.1
Zm00001eb016320 Zea mays HOM05D005806 ORTHO05D007119 4.7e-64 249.6 498 41.4
CDE01G0725 Ceratophyllum demersum HOM05D005806 ORTHO05D007119 9.8e-62 241.9 474 43.0
SEGI_25850 Sequoiadendron giganteum HOM05D005806 ORTHO05D007119 1.1e-57 228.4 571 35.6
Rhsim04G0227400 Rhododendron simsii HOM05D005806 ORTHO05D007119 3.6e-56 223.4 360 43.3
MD13G1163500 Malus domestica HOM05D005806 ORTHO05D007119 2.6e-54 217.2 292 49.3
Lalb_Chr13g0298181 Lupinus albus HOM05D005806 ORTHO05D007119 1.2e-51 208.4 437 41.4
unitig_699.g19987 Utricularia gibba HOM05D005806 ORTHO05D007119 2.1e-48 197.6 494 40.9
AL3G29680 Arabidopsis lyrata HOM05D005806 ORTHO05D007119 3.4e-46 190.3 272 49.6
HanXRQChr13g0413981 Helianthus annuus HOM05D005806 ORTHO05D007119 2.4e-44 184.1 154 63.0
Dinv29718 Davidia involucrata HOM05D000037 ORTHO05D000150 2.4e-39 167.5 138 70.3
AUR62015253 Chenopodium quinoa HOM05D005806 ORTHO05D007119 1.3e-37 161.8 151 60.9
TAR633G1627 Trochodendron aralioides HOM05D005806 ORTHO05D007119 7.1e-36 156.0 167 57.5
AagrBONN_evm.TU.Sc2ySwM_228.3483 Anthoceros agrestis HOM05D005806 ORTHO05D007119 9.3e-28 129.0 193 51.3
CSS0010946 Camellia sinensis var. sinensis HOM05D005806 ORTHO05D007119 6.0e-27 126.3 72 84.7
TAR362G0821 Trochodendron aralioides HOM05D005806 ORTHO05D007119 5.1e-26 123.2 137 55.5
CSS0023833 Camellia sinensis var. sinensis HOM05D005806 ORTHO05D007119 2.1e-24 117.9 72 80.6
SMO334G0099 Selaginella moellendorffii HOM05D005806 ORTHO05D007119 6.2e-24 116.3 351 31.1
Pp3c12_16600 Physcomitrium patens HOM05D005806 ORTHO05D007119 2.4e-23 114.4 413 28.8
Pp3c4_12130 Physcomitrium patens HOM05D005806 ORTHO05D007119 2.2e-21 107.8 415 35.7
Mapoly0005s0119 Marchantia polymorpha HOM05D005806 ORTHO05D007119 1.3e-18 98.6 531 26.7
HPP92_002153 Vanilla planifolia HOM05D005806 ORTHO05D007119 1.3e-18 98.6 96 53.1
FvH4_5g32480 Fragaria vesca HOM05D005806 ORTHO05D007119 5.6e-17 93.2 88 60.2
CBR_g4056 Chara braunii HOM05D005806 ORTHO05D007119 2.0e-14 84.7 321 30.8
SGA_v2.0_scaffold119G32699 Striga asiatica HOM05D005806 ORTHO05D007119 1.0e-13 82.4 407 27.8
CBR_g31779 Chara braunii HOM05D000019 ORTHO05D000002 3.2e-12 77.4 84 40.5
CBR_g39021 Chara braunii HOM05D000003 ORTHO05D000004 4.3e-09 67.0 220 25.5
Nn2g15616 Nelumbo nucifera HOM05D005806 ORTHO05D007119 4.8e-08 63.5 45 66.7
DCAR_014505 Daucus carota HOM05D001310 ORTHO05D001283 5.9e-06 56.6 122 32.8


User provided reference genes

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