Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0004131 Camellia sinensis var. sinensis HOM05D006157 ORTHO05D007826 3.0e-117 425.2 222 100.0
Actinidia23263 Actinidia chinensis HOM05D006157 ORTHO05D007826 2.0e-76 289.7 213 67.6
Dinv35975 Davidia involucrata HOM05D006157 ORTHO05D007826 1.0e-64 250.8 223 64.1
vmacro21540 Vaccinium macrocarpon HOM05D006157 ORTHO05D007826 1.0e-61 240.7 210 58.6
Rhsim06G0048100 Rhododendron simsii HOM05D006157 ORTHO05D007826 5.2e-61 238.4 216 63.4
TWI56G1258 Tripterygium wilfordii HOM05D006157 ORTHO05D007826 4.4e-60 235.3 224 53.6
Potri.002G127800 Populus trichocarpa HOM05D006157 ORTHO05D007826 2.4e-58 229.6 226 53.5
Duzib116G0710 Durio zibethinus HOM05D006157 ORTHO05D007826 3.5e-57 225.7 222 52.7
Sabra14G0022700 Salix brachista HOM05D006157 ORTHO05D007826 2.3e-56 223.0 227 52.9
Potri.014G032300 Populus trichocarpa HOM05D006157 ORTHO05D007826 9.5e-55 217.6 227 51.1
Cfa018525 Carpinus fangiana HOM05D006157 ORTHO05D007826 2.3e-53 213.0 222 52.7
Gohir.D06G015100 Gossypium hirsutum HOM05D006157 ORTHO05D007826 5.2e-53 211.8 222 51.4
Gorai.010G017900 Gossypium raimondii HOM05D006157 ORTHO05D007826 1.2e-52 210.7 222 50.9
Haze_17545 Corylus avellana HOM05D006157 ORTHO05D007826 2.6e-52 209.5 222 52.3
Haze_17554 Corylus avellana HOM05D006157 ORTHO05D007826 2.6e-52 209.5 222 52.3
Gohir.A06G017000 Gossypium hirsutum HOM05D006157 ORTHO05D007826 3.4e-52 209.1 222 50.0
Ciclev10002442m.g Citrus clementina HOM05D006157 ORTHO05D007826 4.4e-52 208.8 225 49.8
TAR628G1181 Trochodendron aralioides HOM05D006157 ORTHO05D007826 9.8e-52 207.6 225 48.0
Nitab4.5_0000686g0050 Nicotiana tabacum HOM05D006157 ORTHO05D007826 3.7e-51 205.7 218 49.1
GSVIVG01009525001 Vitis vinifera HOM05D006157 ORTHO05D007826 4.9e-51 205.3 224 55.4
Hma1.2p1_0718F.1_g208450 Hydrangea macrophylla HOM05D006157 ORTHO05D007826 1.1e-50 204.1 220 52.3
Manes.18G032700 Manihot esculenta HOM05D006157 ORTHO05D007826 1.2e-49 200.7 223 52.9
QL02p005407 Quercus lobata HOM05D006157 ORTHO05D007826 1.2e-49 200.7 225 49.8
Lj4C53T12 Lonicera japonica HOM05D006157 ORTHO05D007826 3.5e-49 199.1 225 57.8
Nitab4.5_0001101g0070 Nicotiana tabacum HOM05D006157 ORTHO05D007826 3.5e-49 199.1 218 46.8
Nn5g30225 Nelumbo nucifera HOM05D006157 ORTHO05D007826 1.7e-48 196.8 227 53.3
Eucgr.F00242 Eucalyptus grandis HOM05D006157 ORTHO05D007826 1.5e-47 193.7 223 53.8
FAN15G3536 Fragaria x ananassa HOM05D006157 ORTHO05D007826 2.1e-46 189.9 218 47.2
MD15G1085000 Malus domestica HOM05D006157 ORTHO05D007826 3.6e-46 189.1 222 48.2
RcHm_v2.0_Chr6g0307431 Rosa chinensis HOM05D006157 ORTHO05D007826 3.6e-46 189.1 221 46.6
CiPaw.15G061800 Carya illinoinensis HOM05D006157 ORTHO05D007826 4.7e-46 188.7 229 47.6
Cpa.g.c24415.4 Carica papaya HOM05D006157 ORTHO05D007826 6.2e-46 188.3 224 47.3
Gorai.005G103500 Gossypium raimondii HOM05D006157 ORTHO05D007826 8.0e-46 188.0 217 44.7
Gohir.D02G092100 Gossypium hirsutum HOM05D006157 ORTHO05D007826 1.0e-45 187.6 217 44.7
Atru.chr13.647 Acer truncatum HOM05D006157 ORTHO05D007826 1.4e-45 187.2 229 49.8
Prupe.1G438800 Prunus persica HOM05D006157 ORTHO05D007826 1.4e-45 187.2 224 48.2
Gohir.A03G079324 Gossypium hirsutum HOM05D006157 ORTHO05D007826 1.8e-45 186.8 217 44.7
PGSC0003DMG400036180 Solanum tuberosum HOM05D006157 ORTHO05D007826 1.8e-45 186.8 219 45.7
Manes.05G171900 Manihot esculenta HOM05D006157 ORTHO05D007826 3.1e-45 186.0 224 46.9
Manes.05G171901 Manihot esculenta HOM05D006157 ORTHO05D007826 3.1e-45 186.0 224 46.9
CANSAT54G0006 Cannabis sativa HOM05D006157 ORTHO05D007826 4.0e-45 185.7 225 50.7
MSTRG.25101 Avicennia marina HOM05D006157 ORTHO05D007826 1.2e-44 184.1 220 49.5
Sed0015883 Sechium edule HOM05D006157 ORTHO05D007826 1.2e-44 184.1 222 46.4
Thecc.08G011200 Theobroma cacao HOM05D006157 ORTHO05D007826 1.5e-44 183.7 167 55.7
MELO3C010885.2 Cucumis melo HOM05D006157 ORTHO05D007826 2.6e-44 183.0 221 45.7
PGR083G2028 Punica granatum HOM05D006157 ORTHO05D007826 2.6e-44 183.0 225 51.6
Actinidia22616 Actinidia chinensis HOM05D006157 ORTHO05D007826 5.8e-44 181.8 170 57.1
Glyma.04G037500 Glycine max HOM05D006157 ORTHO05D007826 5.8e-44 181.8 226 50.0
Cc10_g04340 Coffea canephora HOM05D006157 ORTHO05D007826 1.3e-43 180.6 248 42.3
Sed0006561 Sechium edule HOM05D006157 ORTHO05D007826 1.7e-43 180.3 222 44.1
Peaxi162Scf00528g00414 Petunia axillaris HOM05D006157 ORTHO05D007826 4.9e-43 178.7 213 45.1
Sopen04g032780 Solanum pennellii HOM05D006157 ORTHO05D007826 4.9e-43 178.7 220 45.5
Nitab4.5_0004184g0060 Nicotiana tabacum HOM05D006157 ORTHO05D007890 6.4e-43 178.3 217 45.6
CsaV3_2G028070 Cucumis sativus L. HOM05D006157 ORTHO05D007826 8.3e-43 177.9 221 44.3
Peaxi162Scf00064g00125 Petunia axillaris HOM05D006157 ORTHO05D007826 1.1e-42 177.6 222 45.0
FAN20G0621 Fragaria x ananassa HOM05D006157 ORTHO05D007826 2.4e-42 176.4 221 44.8
Lsat_1_v5_gn_4_124041 Lactuca sativa HOM05D006157 ORTHO05D007826 3.2e-42 176.0 228 43.4
FvH4_2g34660 Fragaria vesca HOM05D006157 ORTHO05D007826 5.4e-42 175.3 222 44.1
VMungo1309G0335 Vigna mungo HOM05D006157 ORTHO05D007826 5.4e-42 175.3 227 46.3
Ca_13302_v3 Cicer arietinum L. HOM05D006157 ORTHO05D007826 7.0e-42 174.9 216 47.2
Phvul.009G063700 Phaseolus vulgaris HOM05D006157 ORTHO05D007826 4.6e-41 172.2 225 49.8
FAN27G0611 Fragaria x ananassa HOM05D006157 ORTHO05D007826 6.0e-41 171.8 221 43.9
ECA232G2668 Erigeron canadensis HOM05D006157 ORTHO05D007826 3.0e-40 169.5 228 46.9
MD08G1103700 Malus domestica HOM05D006157 ORTHO05D007826 3.9e-40 169.1 245 42.0
Nn1g05836 Nelumbo nucifera HOM05D006157 ORTHO05D007826 3.9e-40 169.1 225 46.2
SGA_v2.0_scaffold14G07032 Striga asiatica HOM05D006157 ORTHO05D007826 3.9e-40 169.1 225 44.9
Nitab4.5_0000453g0220 Nicotiana tabacum HOM05D006157 ORTHO05D007890 1.1e-39 167.5 218 43.1
Medtr1g019800 Medicago truncatula HOM05D006157 ORTHO05D007826 1.5e-39 167.2 219 44.7
Phvul.001G020800 Phaseolus vulgaris HOM05D006157 ORTHO05D007826 2.5e-39 166.4 222 50.9
Psat6g012720 Pisum sativum HOM05D006157 ORTHO05D007826 2.5e-39 166.4 218 45.4
VMungo0647G0691 Vigna mungo HOM05D006157 ORTHO05D007826 2.5e-39 166.4 215 53.0
Lj5g0002869 Lotus japonicus HOM05D006157 ORTHO05D007826 3.3e-39 166.0 222 45.0
EL10Ac1g01781 Beta vulgaris HOM05D006157 ORTHO05D007826 7.3e-39 164.9 234 42.7
Glyma.17G243500 Glycine max HOM05D006157 ORTHO05D007826 7.3e-39 164.9 229 51.1
TPR.G13684 Trifolium pratense HOM05D006157 ORTHO05D007826 7.3e-39 164.9 219 44.7
Glyma.14G081800 Glycine max HOM05D006157 ORTHO05D007826 2.8e-38 162.9 228 50.4
ClCG08G015710 Citrullus lanatus HOM05D006157 ORTHO05D007826 3.6e-38 162.5 210 43.8
MBI02_g17343_MAGBIO Magnolia biondii HOM05D006157 ORTHO05D007826 3.6e-38 162.5 222 40.1
Glyma.06G038400 Glycine max HOM05D006157 ORTHO05D007826 8.1e-38 161.4 215 47.9
CSS0005922 Camellia sinensis var. sinensis HOM05D006157 ORTHO05D007826 1.4e-37 160.6 137 65.0
HanXRQChr09g0267931 Helianthus annuus HOM05D006157 ORTHO05D007826 5.2e-37 158.7 235 40.4
Aqoxy6G01361 Aquilegia oxysepala HOM05D006157 ORTHO05D007826 1.2e-36 157.5 226 48.7
AUR62022432 Chenopodium quinoa HOM05D006157 ORTHO05D007826 2.0e-36 156.8 225 41.8
Solyc04g079170.4 Solanum lycopersicum HOM05D006157 ORTHO05D007826 1.3e-35 154.1 207 44.0
Sopen12g030790 Solanum pennellii HOM05D006157 ORTHO05D007826 4.9e-35 152.1 220 41.4
AUR62039307 Chenopodium quinoa HOM05D006157 ORTHO05D007826 2.4e-34 149.8 224 40.6
THA.LOC104806945 Tarenaya hassleriana HOM05D006157 ORTHO05D007826 5.4e-34 148.7 227 41.9
Lalb_Chr14g0368791 Lupinus albus HOM05D006157 ORTHO05D007826 2.1e-33 146.7 222 40.5
PGSC0003DMG400015419 Solanum tuberosum HOM05D006157 ORTHO05D007826 3.5e-33 146.0 154 48.1
SalBow8G3379 Salvia bowleyana HOM05D006157 ORTHO05D007826 1.9e-31 140.2 232 36.2
PSO541G3363 Papaver somniferum HOM05D006157 ORTHO05D007826 1.6e-30 137.1 222 43.2
Solyc12g088890.3 Solanum lycopersicum HOM05D006157 ORTHO05D007890 6.2e-30 135.2 188 42.6
Ah.05g168840 Amaranthus hybridus HOM05D006157 ORTHO05D007826 1.4e-29 134.0 188 46.8
COL.COLO4_26474 Corchorus olitorius HOM05D006157 ORTHO05D007826 2.0e-28 130.2 223 36.3
DCAR_011305 Daucus carota HOM05D005231 ORTHO05D006387 2.0e-28 130.2 173 45.7
CARHR037020 Cardamine hirsuta HOM05D006157 ORTHO05D007826 1.3e-27 127.5 210 38.6
Aa31sc924G20 Aethionema arabicum HOM05D006157 ORTHO05D007826 2.9e-27 126.3 205 39.0
BcaB07g33839 Brassica carinata HOM05D006157 ORTHO05D007826 1.2e-25 120.9 204 38.2
Migut.C00597 Erythranthe guttata HOM05D006157 ORTHO05D007826 1.6e-25 120.6 221 37.1
Sc02g0007020 Simmondsia chinensis HOM05D006157 ORTHO05D007826 2.1e-25 120.2 232 37.5
Thhalv10011797m.g Eutrema salsugineum HOM05D006157 ORTHO05D007826 2.7e-25 119.8 207 39.1
Sp1g34500 Schrenkiella parvula HOM05D006157 ORTHO05D007826 4.6e-25 119.0 204 36.8
SpUn0102_0020 Schrenkiella parvula HOM05D006157 ORTHO05D007826 4.6e-25 119.0 204 36.8
AUR62019555 Chenopodium quinoa HOM05D006157 ORTHO05D007826 1.0e-24 117.9 162 42.0
Carub.0001s3622 Capsella rubella HOM05D006157 ORTHO05D007826 2.3e-24 116.7 215 35.8
A10p06400 Brassica napus HOM05D006157 ORTHO05D007826 3.0e-24 116.3 205 38.0
C06p01910 Brassica napus HOM05D006157 ORTHO05D007826 5.1e-24 115.5 202 37.1
BolSC99t61279H Brassica oleracea HOM05D006157 ORTHO05D007826 6.6e-24 115.2 204 37.3
Migut.N02699 Erythranthe guttata HOM05D006157 ORTHO05D007826 8.6e-24 114.8 221 34.8
AL1G53700 Arabidopsis lyrata HOM05D006157 ORTHO05D007826 1.1e-23 114.4 196 39.8
AT1G47410 Arabidopsis thaliana HOM05D006157 ORTHO05D007826 1.1e-23 114.4 204 36.8
PSO675G5393 Papaver somniferum HOM05D006157 ORTHO05D007826 2.5e-23 113.2 160 41.9
arahy.Tifrunner.gnm1.ann1.HUL940 Arachis hypogaea HOM05D006157 ORTHO05D007826 7.1e-18 95.1 216 34.3
arahy.Tifrunner.gnm1.ann1.R9H0NA Arachis hypogaea HOM05D006157 ORTHO05D007826 7.1e-18 95.1 216 34.3
BcaC08g42947 Brassica carinata HOM05D006157 ORTHO05D007826 9.3e-18 94.7 199 32.7
Duzib093G2157 Durio zibethinus HOM05D006157 ORTHO05D007826 3.0e-16 89.7 92 50.0
Zm00001eb315050 Zea mays HOM05D006157 ORTHO05D007826 1.2e-12 77.8 256 27.3
ATR0100G006 Amborella trichopoda HOM05D006157 ORTHO05D007826 4.2e-10 69.3 181 26.5
Os09g0460100 Oryza sativa ssp. japonica HOM05D006157 ORTHO05D007826 1.2e-09 67.8 221 32.6
ATR0100G061 Amborella trichopoda HOM05D006157 ORTHO05D007826 2.7e-09 66.6 181 27.1
SalBow8G4867 Salvia bowleyana HOM05D006157 ORTHO05D007826 7.9e-09 65.1 34 76.5
unitig_22.g6773 Utricularia gibba HOM05D006157 ORTHO05D007826 3.0e-08 63.2 204 31.4
Zm00001eb100900 Zea mays HOM05D006157 ORTHO05D007826 1.3e-06 57.8 46 52.2
HPP92_027520 Vanilla planifolia HOM05D006157 ORTHO05D007826 4.8e-06 55.8 160 35.0


User provided reference genes

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