Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0004118 Camellia sinensis var. sinensis HOM05D002646 ORTHO05D002782 1.9e-31 140.6 70 100.0
CSS0007142 Camellia sinensis var. sinensis HOM05D002646 ORTHO05D002782 3.9e-21 106.3 64 89.1
CSS0011651 Camellia sinensis var. sinensis HOM05D002646 ORTHO05D002782 1.5e-20 104.4 64 87.5
CSS0043279 Camellia sinensis var. sinensis HOM05D002646 ORTHO05D002782 1.5e-20 104.4 64 87.5
CSS0033317 Camellia sinensis var. sinensis HOM05D002646 ORTHO05D002782 3.3e-20 103.2 64 85.9
QL02p008978 Quercus lobata HOM05D002646 ORTHO05D002782 1.7e-16 90.9 65 76.9
Dinv36096 Davidia involucrata HOM05D002646 ORTHO05D002782 2.2e-16 90.5 55 85.5
Cfa018170 Carpinus fangiana HOM05D002646 ORTHO05D002782 4.9e-16 89.4 56 82.1
Haze_17945 Corylus avellana HOM05D002646 ORTHO05D002782 4.9e-16 89.4 56 82.1
Actinidia15339 Actinidia chinensis HOM05D002646 ORTHO05D002782 6.4e-16 89.0 52 88.5
Rhsim06G0032100 Rhododendron simsii HOM05D002646 ORTHO05D002782 1.1e-15 88.2 53 84.9
Ciclev10000434m.g Citrus clementina HOM05D002646 ORTHO05D002782 1.4e-15 87.8 56 82.1
CiPaw.16G059900 Carya illinoinensis HOM05D002646 ORTHO05D002782 1.9e-15 87.4 64 73.4
DCAR_019536 Daucus carota HOM05D002646 ORTHO05D002782 1.9e-15 87.4 55 78.2
ClCG08G014890 Citrullus lanatus HOM05D002646 ORTHO05D002782 2.4e-15 87.0 56 80.4
Lj4A37G90 Lonicera japonica HOM05D002646 ORTHO05D002782 3.2e-15 86.7 56 76.8
Atru.chr13.450 Acer truncatum HOM05D002646 ORTHO05D002782 5.4e-15 85.9 56 80.4
TWI36G1083 Tripterygium wilfordii HOM05D002646 ORTHO05D002782 5.4e-15 85.9 56 80.4
DCAR_006185 Daucus carota HOM05D002646 ORTHO05D002782 9.3e-15 85.1 57 78.9
Oeu007022.1 Olea europaea HOM05D002646 ORTHO05D002782 1.2e-14 84.7 56 75.0
GSVIVG01009725001 Vitis vinifera HOM05D002646 ORTHO05D002782 1.2e-14 84.7 56 78.6
CANSAT25G1404 Cannabis sativa HOM05D002646 ORTHO05D002782 1.6e-14 84.3 55 78.2
CsaV3_2G028870 Cucumis sativus L. HOM05D002646 ORTHO05D002782 4.6e-14 82.8 52 82.7
MD03G1139500 Malus domestica HOM05D002646 ORTHO05D002782 4.6e-14 82.8 56 76.8
Nn7g35815 Nelumbo nucifera HOM05D002646 ORTHO05D002782 1.0e-13 81.6 64 70.3
Cpa.g.sc33.173 Carica papaya HOM05D002646 ORTHO05D002782 2.3e-13 80.5 58 67.2
MBI16_g07737_MAGBIO Magnolia biondii HOM05D002646 ORTHO05D002782 2.3e-13 80.5 55 74.5
Cc10_g02720 Coffea canephora HOM05D002646 ORTHO05D002782 3.0e-13 80.1 58 69.0
Nitab4.5_0000017g0180 Nicotiana tabacum HOM05D002646 ORTHO05D002782 3.9e-13 79.7 58 69.0
Nitab4.5_0004768g0020 Nicotiana tabacum HOM05D002646 ORTHO05D002782 3.9e-13 79.7 58 69.0
PGSC0003DMG400005374 Solanum tuberosum HOM05D002646 ORTHO05D002782 5.1e-13 79.3 58 65.5
Oeu063762.1 Olea europaea HOM05D002646 ORTHO05D002782 6.7e-13 79.0 56 71.4
CAN.G424.59 Capsicum annuum HOM05D002646 ORTHO05D002782 8.7e-13 78.6 54 72.2
PSO675G2317 Papaver somniferum HOM05D002646 ORTHO05D002782 8.7e-13 78.6 58 67.2
Sc02g0005990 Simmondsia chinensis HOM05D002646 ORTHO05D002782 8.7e-13 78.6 58 69.0
HanXRQChr03g0069631 Helianthus annuus HOM05D002646 ORTHO05D002782 1.1e-12 78.2 52 73.1
Peaxi162Scf00258g00024 Petunia axillaris HOM05D002646 ORTHO05D002782 1.1e-12 78.2 56 69.6
Peaxi162Scf00345g00113 Petunia axillaris HOM05D002646 ORTHO05D002782 1.1e-12 78.2 56 69.6
Duzib041G0261 Durio zibethinus HOM05D002646 ORTHO05D002782 1.5e-12 77.8 57 73.7
PSO017G2345 Papaver somniferum HOM05D002646 ORTHO05D002782 1.5e-12 77.8 66 62.1
Sopen07g013020 Solanum pennellii HOM05D002646 ORTHO05D002782 2.5e-12 77.0 58 65.5
Sopen07g013050 Solanum pennellii HOM05D002646 ORTHO05D002782 2.5e-12 77.0 58 65.5
MBI17_g36957_MAGBIO Magnolia biondii HOM05D002646 ORTHO05D002782 5.6e-12 75.9 54 74.1
SGA_v2.0_scaffold201G41411 Striga asiatica HOM05D002646 ORTHO05D002782 5.6e-12 75.9 56 66.1
Migut.C00748 Erythranthe guttata HOM05D002646 ORTHO05D002782 7.4e-12 75.5 52 69.2
Gohir.D06G005550 Gossypium hirsutum HOM05D002646 ORTHO05D002782 7.4e-12 75.5 57 68.4
Gorai.010G009700 Gossypium raimondii HOM05D002646 ORTHO05D002782 7.4e-12 75.5 57 68.4
Eucgr.F01577 Eucalyptus grandis HOM05D002646 ORTHO05D002782 1.6e-11 74.3 58 69.0
Gohir.A06G009600 Gossypium hirsutum HOM05D002646 ORTHO05D002782 1.6e-11 74.3 57 66.7
Peaxi162Scf00303g00042 Petunia axillaris HOM05D002646 ORTHO05D002782 1.6e-11 74.3 58 69.0
EL10Ac4g08951 Beta vulgaris HOM05D002646 ORTHO05D002782 2.1e-11 73.9 56 69.6
Potri.005G228200 Populus trichocarpa HOM05D002646 ORTHO05D002782 2.8e-11 73.6 56 62.5
Sabra05G0176100 Salix brachista HOM05D002646 ORTHO05D002782 2.8e-11 73.6 56 62.5
Aqoxy2G03652 Aquilegia oxysepala HOM05D002646 ORTHO05D002782 4.8e-11 72.8 60 58.3
PGR083G1089 Punica granatum HOM05D002646 ORTHO05D002782 4.8e-11 72.8 56 66.1
THA.LOC104813824 Tarenaya hassleriana HOM05D002646 ORTHO05D002782 4.8e-11 72.8 58 65.5
Manes.05G158200 Manihot esculenta HOM05D002646 ORTHO05D002782 1.1e-10 71.6 51 68.6
Ca_13365_v3 Cicer arietinum L. HOM05D002646 ORTHO05D002782 5.3e-10 69.3 56 60.7
AL1G32270 Arabidopsis lyrata HOM05D002646 ORTHO05D002782 6.9e-10 68.9 56 62.5
MSTRG.25182 Avicennia marina HOM05D002646 ORTHO05D002782 6.9e-10 68.9 55 63.6
Lsat_1_v5_gn_5_28001 Lactuca sativa HOM05D002646 ORTHO05D002782 6.9e-10 68.9 56 64.3
FvH4_6g24430 Fragaria vesca HOM05D002646 ORTHO05D002782 1.2e-09 68.2 55 65.5
FAN02G0761 Fragaria x ananassa HOM05D002646 ORTHO05D002782 1.2e-09 68.2 55 65.5
FAN14G1091 Fragaria x ananassa HOM05D002646 ORTHO05D002782 1.2e-09 68.2 55 65.5
Lalb_Chr14g0369361 Lupinus albus HOM05D002646 ORTHO05D002782 1.2e-09 68.2 55 61.8
Carub.0001s1909 Capsella rubella HOM05D002646 ORTHO05D002782 2.0e-09 67.4 56 62.5
arahy.Tifrunner.gnm1.ann1.GFJ2Z4 Arachis hypogaea HOM05D002646 ORTHO05D002782 2.6e-09 67.0 56 58.9
arahy.Tifrunner.gnm1.ann1.RWN5MT Arachis hypogaea HOM05D002646 ORTHO05D002782 2.6e-09 67.0 56 58.9
vmacro21650 Vaccinium macrocarpon HOM05D002646 ORTHO05D002782 2.6e-09 67.0 42 81.0
AT1G19520 Arabidopsis thaliana HOM05D002646 ORTHO05D002782 3.4e-09 66.6 56 62.5
FAN09G1605 Fragaria x ananassa HOM05D002646 ORTHO05D002782 3.4e-09 66.6 56 64.3
HPP92_021825 Vanilla planifolia HOM05D002646 ORTHO05D002782 3.4e-09 66.6 55 60.0
Zm00001eb246850 Zea mays HOM05D002646 ORTHO05D002782 3.4e-09 66.6 58 56.9
Sed0008809 Sechium edule HOM05D002646 ORTHO05D002782 5.8e-09 65.9 41 80.5
Aa31LG7G4170 Aethionema arabicum HOM05D002646 ORTHO05D002782 7.6e-09 65.5 56 60.7
CARHR020090 Cardamine hirsuta HOM05D002646 ORTHO05D002782 7.6e-09 65.5 56 62.5
Thhalv10006936m.g Eutrema salsugineum HOM05D002646 ORTHO05D002782 7.6e-09 65.5 61 57.4
Hund06823 Selenicereus undatus HOM05D002646 ORTHO05D002782 7.6e-09 65.5 56 58.9
Ah.10g033130 Amaranthus hybridus HOM05D002646 ORTHO05D002782 9.9e-09 65.1 56 58.9
FAN05G0303 Fragaria x ananassa HOM05D002646 ORTHO05D002782 9.9e-09 65.1 56 62.5
Sp1g17390 Schrenkiella parvula HOM05D002646 ORTHO05D002782 1.7e-08 64.3 52 63.5
Thecc.08G028900 Theobroma cacao HOM05D002646 ORTHO05D002782 1.7e-08 64.3 50 66.0
unitig_46.g18436 Utricularia gibba HOM05D002509 ORTHO05D002758 2.2e-08 63.9 52 57.7
ECA246G2606 Erigeron canadensis HOM05D002646 ORTHO05D002782 2.9e-08 63.5 54 57.4
Os02g0611400 Oryza sativa ssp. japonica HOM05D002646 ORTHO05D002782 3.8e-08 63.2 58 55.2
Prupe.6G124500 Prunus persica HOM05D002646 ORTHO05D002782 3.8e-08 63.2 41 78.0
BcaB07g31981 Brassica carinata HOM05D002646 ORTHO05D002782 4.9e-08 62.8 52 61.5
COL.COLO4_26294 Corchorus olitorius HOM05D002646 ORTHO05D002782 6.4e-08 62.4 54 59.3
BcaC05g25840 Brassica carinata HOM05D002646 ORTHO05D002782 8.4e-08 62.0 59 57.6
C05p18020 Brassica napus HOM05D002646 ORTHO05D002782 8.4e-08 62.0 59 57.6
BolC5t30509H Brassica oleracea HOM05D002646 ORTHO05D002782 8.4e-08 62.0 59 57.6
RcHm_v2.0_Chr7g0207751 Rosa chinensis HOM05D002646 ORTHO05D002782 1.4e-07 61.2 42 76.2
Potri.002G034900 Populus trichocarpa HOM05D002646 ORTHO05D002782 2.4e-07 60.5 45 66.7
Medtr1g022360 Medicago truncatula HOM05D002646 ORTHO05D002782 3.2e-07 60.1 46 58.7
ATR0568G218 Amborella trichopoda HOM05D002646 ORTHO05D002782 4.2e-07 59.7 45 66.7
Psat6g008080 Pisum sativum HOM05D002646 ORTHO05D002782 4.2e-07 59.7 43 65.1
Lj5g0008895 Lotus japonicus HOM05D002646 ORTHO05D002782 5.5e-07 59.3 56 55.4
MELO3C010957.2 Cucumis melo HOM05D002646 ORTHO05D002782 7.1e-07 58.9 38 76.3
Glyma.17G251300 Glycine max HOM05D002646 ORTHO05D002782 9.3e-07 58.5 45 62.2
Sabra02G0027900 Salix brachista HOM05D006278 ORTHO05D007526 1.2e-06 58.2 36 77.8
CSS0029682 Camellia sinensis var. sinensis HOM05D002646 ORTHO05D002782 1.6e-06 57.8 55 52.7
SEGI_28365 Sequoiadendron giganteum HOM05D002646 ORTHO05D002782 1.6e-06 57.8 55 52.7
A06p15700 Brassica napus HOM05D002646 ORTHO05D002782 2.1e-06 57.4 52 57.7
BraA06t24679Z Brassica rapa HOM05D002646 ORTHO05D002782 2.1e-06 57.4 52 57.7
GSVIVG01027622001 Vitis vinifera HOM05D002646 ORTHO05D002782 2.1e-06 57.4 56 50.0
CSS0036552 Camellia sinensis var. sinensis HOM05D002646 ORTHO05D002782 2.7e-06 57.0 52 53.8
MD08G1028000 Malus domestica HOM05D002646 ORTHO05D002782 2.7e-06 57.0 58 46.6
RcHm_v2.0_Chr1g0350721 Rosa chinensis HOM05D002646 ORTHO05D002782 2.7e-06 57.0 58 44.8
AUR62043098 Chenopodium quinoa HOM05D002646 ORTHO05D002782 3.5e-06 56.6 49 61.2
Prupe.2G146700 Prunus persica HOM05D002646 ORTHO05D002782 3.5e-06 56.6 58 44.8
QL12p017558 Quercus lobata HOM05D002646 ORTHO05D002782 3.5e-06 56.6 56 50.0
TPR.G20158 Trifolium pratense HOM05D002646 ORTHO05D002782 3.5e-06 56.6 43 62.8
TAR374G0079 Trochodendron aralioides HOM05D002646 ORTHO05D002782 3.5e-06 56.6 54 50.0
ClCG05G002180 Citrullus lanatus HOM05D002646 ORTHO05D002782 4.6e-06 56.2 54 51.9
COL.COLO4_12558 Corchorus olitorius HOM05D002646 ORTHO05D002782 4.6e-06 56.2 61 44.3
MBI04_g32239_MAGBIO Magnolia biondii HOM05D002646 ORTHO05D002782 4.6e-06 56.2 58 50.0
MBI17_g19090_MAGBIO Magnolia biondii HOM05D002646 ORTHO05D002782 4.6e-06 56.2 50 60.0
Duzib268G1615 Durio zibethinus HOM05D002646 ORTHO05D002782 6.0e-06 55.8 54 50.0
Glyma.14G073700 Glycine max HOM05D002646 ORTHO05D002782 6.0e-06 55.8 43 60.5
SHI08146 Sapria himalayana HOM05D002646 ORTHO05D002782 6.0e-06 55.8 55 49.1
SEGI_27493 Sequoiadendron giganteum HOM05D002646 ORTHO05D002782 6.0e-06 55.8 53 50.9
MELO3C006182.2 Cucumis melo HOM05D002646 ORTHO05D002782 7.9e-06 55.5 59 44.1
Duzib268G0058 Durio zibethinus HOM05D002646 ORTHO05D002782 7.9e-06 55.5 54 50.0
Duzib268G0077 Durio zibethinus HOM05D002646 ORTHO05D002782 7.9e-06 55.5 54 50.0


User provided reference genes

Program Settings