Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0004114 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 7.0e-88 327.4 183 100.0
CSS0017523 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 2.0e-87 325.9 183 99.5
CSS0022243 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 7.7e-87 323.9 183 98.9
CSS0042721 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 5.0e-86 321.2 181 98.9
CSS0009085 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 6.5e-86 320.9 183 97.8
CSS0049827 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.9e-85 319.3 183 97.8
CSS0019011 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 4.0e-75 285.0 183 90.2
CSS0001859 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 2.0e-74 282.7 197 85.3
CSS0027604 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 2.0e-74 282.7 197 85.3
CSS0016540 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 2.6e-74 282.3 201 83.6
CSS0022133 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 2.0e-71 272.7 201 81.1
Dinv04407 Davidia involucrata HOM05D004683 ORTHO05D005388 5.2e-43 178.3 207 60.4
CSS0018655 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 6.9e-43 177.9 194 59.3
CSS0042800 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.2e-42 177.2 194 60.3
Actinidia11898 Actinidia chinensis HOM05D004683 ORTHO05D005388 1.1e-37 160.6 202 55.4
Actinidia39280 Actinidia chinensis HOM05D004683 ORTHO05D005388 3.3e-37 159.1 202 54.0
TAR626G1909 Trochodendron aralioides HOM05D004683 ORTHO05D005388 1.8e-35 153.3 205 53.2
TAR341G0001 Trochodendron aralioides HOM05D004683 ORTHO05D005388 5.8e-34 148.3 212 50.0
TAR485G0001 Trochodendron aralioides HOM05D004683 ORTHO05D005388 5.8e-34 148.3 212 50.0
Nn1g07478 Nelumbo nucifera HOM05D004683 ORTHO05D005388 1.9e-32 143.3 205 51.7
Lj2A259T33 Lonicera japonica HOM05D004683 ORTHO05D005388 1.6e-31 140.2 198 49.5
Hma1.2p1_0657F.1_g196900 Hydrangea macrophylla HOM05D004683 ORTHO05D005388 6.0e-31 138.3 198 54.0
Sed0018998 Sechium edule HOM05D004683 ORTHO05D005388 2.5e-29 132.9 201 48.3
ClCG01G010700 Citrullus lanatus HOM05D004683 ORTHO05D005388 2.4e-27 126.3 202 47.5
MELO3C025532.2 Cucumis melo HOM05D004683 ORTHO05D005388 9.0e-27 124.4 202 46.5
CsaV3_1G015800 Cucumis sativus L. HOM05D004683 ORTHO05D005388 2.6e-26 122.9 202 46.5
CsaV3_UNG061480 Cucumis sativus L. HOM05D004683 ORTHO05D005388 2.6e-26 122.9 202 46.5
Rhsim02G0091200 Rhododendron simsii HOM05D004683 ORTHO05D005388 3.4e-26 122.5 208 48.1
CANSAT56G4109 Cannabis sativa HOM05D004683 ORTHO05D005388 5.8e-26 121.7 205 45.4
MBI19_g44082_MAGBIO Magnolia biondii HOM05D004683 ORTHO05D005388 2.2e-25 119.8 205 44.4
Aqoxy4G02236 Aquilegia oxysepala HOM05D004683 ORTHO05D005388 1.9e-24 116.7 208 42.8
ATR0624G003 Amborella trichopoda HOM05D004683 ORTHO05D005388 3.2e-24 115.9 198 45.5
Potri.006G017200 Populus trichocarpa HOM05D004683 ORTHO05D005388 1.6e-23 113.6 204 42.2
Sabra16G0012500 Salix brachista HOM05D004683 ORTHO05D005388 3.5e-23 112.5 204 42.6
Manes.09G081701 Manihot esculenta HOM05D004683 ORTHO05D005388 7.9e-23 111.3 202 43.1
Potri.016G008400 Populus trichocarpa HOM05D004683 ORTHO05D005388 1.0e-22 110.9 204 41.2
RcHm_v2.0_Chr5g0000761 Rosa chinensis HOM05D004683 ORTHO05D005388 1.3e-22 110.5 191 45.5
Sabra06G0012200 Salix brachista HOM05D004683 ORTHO05D005388 1.8e-22 110.2 203 42.9
Sabra16G0012800 Salix brachista HOM05D004683 ORTHO05D005388 3.9e-22 109.0 209 41.6
Prupe.4G006700 Prunus persica HOM05D004683 ORTHO05D005388 8.7e-22 107.8 195 44.6
Gorai.011G008800 Gossypium raimondii HOM05D004683 ORTHO05D005388 1.9e-21 106.7 198 42.4
Duzib160G0680 Durio zibethinus HOM05D004683 ORTHO05D005388 3.3e-21 105.9 199 43.2
Gohir.A10G008300 Gossypium hirsutum HOM05D004683 ORTHO05D005388 4.3e-21 105.5 198 41.9
CiPaw.09G105900 Carya illinoinensis HOM05D004683 ORTHO05D005388 9.6e-21 104.4 210 44.3
Gohir.D10G008100 Gossypium hirsutum HOM05D004683 ORTHO05D005388 2.1e-20 103.2 198 41.9
TWI63G0041 Tripterygium wilfordii HOM05D004683 ORTHO05D005388 6.2e-20 101.7 196 41.8
Duzib235G0361 Durio zibethinus HOM05D004683 ORTHO05D005388 1.1e-19 100.9 199 40.2
PSO675G6369 Papaver somniferum HOM05D004683 ORTHO05D005388 2.4e-19 99.8 208 41.8
TWI38G0781 Tripterygium wilfordii HOM05D004683 ORTHO05D005388 2.4e-19 99.8 199 42.2
Cpa.g.sc27.252 Carica papaya HOM05D004683 ORTHO05D005388 3.1e-19 99.4 197 42.1
PSO541G4951 Papaver somniferum HOM05D004683 ORTHO05D005388 3.1e-19 99.4 208 41.8
Cfa000066 Carpinus fangiana HOM05D004683 ORTHO05D005388 4.0e-19 99.0 210 40.5
Ciclev10017876m.g Citrus clementina HOM05D004683 ORTHO05D005388 4.0e-19 99.0 197 40.1
Sc05g0009730 Simmondsia chinensis HOM05D004683 ORTHO05D005388 5.3e-19 98.6 206 41.7
MD10G1336700 Malus domestica HOM05D004683 ORTHO05D005388 6.9e-19 98.2 195 42.6
GSVIVG01007216001 Vitis vinifera HOM05D004683 ORTHO05D005388 1.2e-18 97.4 128 49.2
Phvul.006G141000 Phaseolus vulgaris HOM05D004683 ORTHO05D005388 5.8e-18 95.1 194 39.7
Thecc.06G237400 Theobroma cacao HOM05D004683 ORTHO05D005388 1.7e-17 93.6 188 39.9
Lsat_1_v5_gn_7_14120 Lactuca sativa HOM05D004683 ORTHO05D005388 2.2e-17 93.2 208 43.8
CDE06G0298 Ceratophyllum demersum HOM05D000165 ORTHO05D005388 2.9e-17 92.8 196 41.3
FvH4_3g00551 Fragaria vesca HOM05D004683 ORTHO05D005388 2.9e-17 92.8 196 41.8
TPR.G10575 Trifolium pratense HOM05D004683 ORTHO05D005388 6.5e-17 91.7 197 42.1
PGR004G0928 Punica granatum HOM05D004683 ORTHO05D005388 1.1e-16 90.9 211 40.3
QL05p068796 Quercus lobata HOM05D004683 ORTHO05D005388 1.1e-16 90.9 201 39.3
vmacro15736 Vaccinium macrocarpon HOM05D004683 ORTHO05D005388 1.1e-16 90.9 210 42.4
Lj6g0001835 Lotus japonicus HOM05D004683 ORTHO05D005388 1.9e-16 90.1 204 39.7
Medtr2g026550 Medicago truncatula HOM05D004683 ORTHO05D005388 3.2e-16 89.4 203 40.9
COL.COLO4_15259 Corchorus olitorius HOM05D004683 ORTHO05D005388 5.5e-16 88.6 200 38.5
arahy.Tifrunner.gnm1.ann1.5M71YA Arachis hypogaea HOM05D004683 ORTHO05D005388 7.1e-16 88.2 199 37.7
arahy.Tifrunner.gnm1.ann1.L4TARN Arachis hypogaea HOM05D004683 ORTHO05D005388 7.1e-16 88.2 199 37.7
AUR62012829 Chenopodium quinoa HOM05D004683 ORTHO05D005388 9.3e-16 87.8 196 38.3
Lsat_1_v5_gn_0_24381 Lactuca sativa HOM05D004683 ORTHO05D005388 9.3e-16 87.8 209 40.7
Psat1g173720 Pisum sativum HOM05D004683 ORTHO05D005388 1.2e-15 87.4 196 40.3
CDE04G2289 Ceratophyllum demersum HOM05D004683 ORTHO05D005388 2.7e-15 86.3 193 39.9
Hund21139 Selenicereus undatus HOM05D004683 ORTHO05D005388 2.7e-15 86.3 204 39.2
AUR62021828 Chenopodium quinoa HOM05D004683 ORTHO05D005388 6.0e-15 85.1 198 37.4
Nitab4.5_0001668g0040 Nicotiana tabacum HOM05D004683 ORTHO05D005388 1.8e-14 83.6 212 40.1
Ah.14g087460 Amaranthus hybridus HOM05D004683 ORTHO05D005388 2.3e-14 83.2 195 39.5
EL10Ac8g20240 Beta vulgaris HOM05D004683 ORTHO05D005388 2.3e-14 83.2 196 37.2
FAN25G2373 Fragaria x ananassa HOM05D004683 ORTHO05D005388 2.3e-14 83.2 194 40.2
Haze_06980 Corylus avellana HOM05D004683 ORTHO05D005388 3.0e-14 82.8 166 39.8
Eucgr.D01443 Eucalyptus grandis HOM05D004683 ORTHO05D005388 6.7e-14 81.6 213 39.0
Gohir.D06G161900 Gossypium hirsutum HOM05D004683 ORTHO05D005388 6.7e-14 81.6 202 37.1
Gorai.010G188900 Gossypium raimondii HOM05D004683 ORTHO05D005388 6.7e-14 81.6 202 37.6
Solyc11g012610.2 Solanum lycopersicum HOM05D004683 ORTHO05D005388 8.7e-14 81.3 214 35.5
Sopen00g010710 Solanum pennellii HOM05D004683 ORTHO05D005388 8.7e-14 81.3 210 36.2
PGSC0003DMG400013358 Solanum tuberosum HOM05D004683 ORTHO05D005388 1.1e-13 80.9 215 35.3
THA.LOC104806735 Tarenaya hassleriana HOM05D004683 ORTHO05D005388 3.3e-13 79.3 200 39.0
Gohir.A06G155500 Gossypium hirsutum HOM05D004683 ORTHO05D005388 7.4e-13 78.2 206 35.9
Ah.09g234040 Amaranthus hybridus HOM05D004683 ORTHO05D005388 9.7e-13 77.8 196 38.3
VMungo0540G0168 Vigna mungo HOM05D004683 ORTHO05D005388 2.2e-12 76.6 132 43.9
HanXRQChr15g0470281 Helianthus annuus HOM05D004683 ORTHO05D005388 6.3e-12 75.1 174 39.1
MD00G1058000 Malus domestica HOM05D004683 ORTHO05D005388 8.2e-12 74.7 192 38.0
HPP92_028363 Vanilla planifolia HOM05D004683 ORTHO05D005388 1.1e-11 74.3 202 35.1
MSTRG.7144 Avicennia marina HOM05D004683 ORTHO05D005388 1.4e-11 73.9 154 38.3
Glyma.09G012400 Glycine max HOM05D004683 ORTHO05D005388 1.4e-11 73.9 199 35.2
Glyma.15G117000 Glycine max HOM05D004683 ORTHO05D005388 1.4e-11 73.9 194 34.5
CAN.G696.10 Capsicum annuum HOM05D004683 ORTHO05D005388 1.8e-11 73.6 217 34.6
HPP92_014031 Vanilla planifolia HOM05D004683 ORTHO05D005388 4.1e-11 72.4 198 35.4
Peaxi162Scf00352g01036 Petunia axillaris HOM05D004683 ORTHO05D005388 1.2e-10 70.9 207 36.2
QL05p068304 Quercus lobata HOM05D004683 ORTHO05D005388 1.2e-10 70.9 202 36.1
Migut.M01430 Erythranthe guttata HOM05D004683 ORTHO05D005388 3.4e-10 69.3 204 35.8
Lalb_Chr15g0088101 Lupinus albus HOM05D004683 ORTHO05D005388 4.5e-10 68.9 201 35.3
BcaC09g50454 Brassica carinata HOM05D004683 ORTHO05D005388 1.7e-09 67.0 192 36.5
C01p25270 Brassica napus HOM05D004683 ORTHO05D005388 1.7e-09 67.0 192 36.5
CARHR223850 Cardamine hirsuta HOM05D004683 ORTHO05D005388 1.7e-09 67.0 198 39.4
SGA_v2.0_scaffold7G03714 Striga asiatica HOM05D004683 ORTHO05D005388 2.2e-09 66.6 155 36.1
A01p20140 Brassica napus HOM05D004683 ORTHO05D005388 2.9e-09 66.2 196 37.8
BolC1t02477H Brassica oleracea HOM05D004683 ORTHO05D005388 2.9e-09 66.2 192 35.9
BraA01t01938Z Brassica rapa HOM05D004683 ORTHO05D005388 2.9e-09 66.2 196 37.8
DCAR_030854 Daucus carota HOM05D004683 ORTHO05D005388 2.9e-09 66.2 196 37.8
Thhalv10025641m.g Eutrema salsugineum HOM05D004683 ORTHO05D005388 2.9e-09 66.2 194 38.7
Atru.chr1.2335 Acer truncatum HOM05D004683 ORTHO05D005388 3.8e-09 65.9 197 34.5
CDE04G1899 Ceratophyllum demersum HOM05D004683 ORTHO05D005388 5.0e-09 65.5 200 36.5
AL7G37470 Arabidopsis lyrata HOM05D004683 ORTHO05D005388 6.5e-09 65.1 196 38.8
Oeu030103.1 Olea europaea HOM05D004683 ORTHO05D005388 6.5e-09 65.1 140 37.9
SalBow8G0627 Salvia bowleyana HOM05D004683 ORTHO05D005388 1.4e-08 63.9 203 36.5
Oeu052851.1 Olea europaea HOM05D004683 ORTHO05D005388 2.5e-08 63.2 118 41.5
AT4G17240 Arabidopsis thaliana HOM05D004683 ORTHO05D005388 3.2e-08 62.8 197 38.6
Nitab4.5_0001109g0120 Nicotiana tabacum HOM05D004683 ORTHO05D005388 3.2e-08 62.8 199 34.7
Sp7g16950 Schrenkiella parvula HOM05D004683 ORTHO05D005388 3.2e-08 62.8 203 37.9
Nitab4.5_0004646g0030 Nicotiana tabacum HOM05D004683 ORTHO05D005388 7.2e-08 61.6 203 34.0
Oeu052866.1 Olea europaea HOM05D004683 ORTHO05D005388 7.2e-08 61.6 133 38.3
PGSC0003DMG400023555 Solanum tuberosum HOM05D004683 ORTHO05D005388 9.4e-08 61.2 213 33.8
Carub.0007s2417 Capsella rubella HOM05D004683 ORTHO05D005388 1.6e-07 60.5 197 37.6
Peaxi162Scf01544g00025 Petunia axillaris HOM05D004683 ORTHO05D005388 2.1e-07 60.1 115 39.1
SEGI_35929 Sequoiadendron giganteum HOM05D004683 ORTHO05D005388 2.1e-07 60.1 205 32.2
BcaNung00108 Brassica carinata HOM05D004683 ORTHO05D005388 3.6e-07 59.3 200 35.0
Solyc04g014850.3 Solanum lycopersicum HOM05D004683 ORTHO05D005388 6.1e-07 58.5 197 33.5
Sopen04g006980 Solanum pennellii HOM05D004683 ORTHO05D005388 7.9e-07 58.2 197 33.5
CDE07G1645 Ceratophyllum demersum HOM05D004683 ORTHO05D005388 1.8e-06 57.0 197 31.0
Cc09_g00590 Coffea canephora HOM05D004683 ORTHO05D005388 5.1e-06 55.5 135 34.8


User provided reference genes

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