Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0004097 Camellia sinensis var. sinensis HOM05D006128 ORTHO05D007466 1.5e-112 409.5 199 100.0
CSS0035054 Camellia sinensis var. sinensis HOM05D006128 ORTHO05D007466 1.5e-96 356.3 187 93.0
CSS0018421 Camellia sinensis var. sinensis HOM05D006128 ORTHO05D007466 3.4e-96 355.1 187 92.5
Dinv33101 Davidia involucrata HOM05D006128 ORTHO05D007466 2.9e-79 298.9 185 81.1
Actinidia25836 Actinidia chinensis HOM05D006128 ORTHO05D007466 2.0e-72 276.2 184 76.1
Atru.chr5.1049 Acer truncatum HOM05D006128 ORTHO05D007466 1.1e-70 270.4 189 73.5
vmacro15124 Vaccinium macrocarpon HOM05D006128 ORTHO05D007466 1.9e-70 269.6 190 75.8
Rhsim01G0289400 Rhododendron simsii HOM05D006128 ORTHO05D007466 9.3e-70 267.3 193 74.1
Thecc.01G310500 Theobroma cacao HOM05D006128 ORTHO05D007466 2.1e-69 266.2 187 71.7
QL12p028969 Quercus lobata HOM05D006128 ORTHO05D007466 6.1e-69 264.6 188 69.7
Duzib138G0044 Durio zibethinus HOM05D006128 ORTHO05D007466 1.1e-67 260.4 185 71.4
Manes.05G001900 Manihot esculenta HOM05D006128 ORTHO05D007466 1.5e-67 260.0 186 73.7
Potri.002G198400 Populus trichocarpa HOM05D006128 ORTHO05D007466 2.5e-67 259.2 189 70.4
Manes.01G226000 Manihot esculenta HOM05D006128 ORTHO05D007466 3.3e-67 258.8 188 70.2
Duzib133G0480 Durio zibethinus HOM05D006128 ORTHO05D007466 1.4e-65 253.4 187 69.0
Gorai.004G050700 Gossypium raimondii HOM05D006128 ORTHO05D007466 1.4e-65 253.4 187 67.9
FvH4_5g39570 Fragaria vesca HOM05D006128 ORTHO05D007466 1.8e-65 253.1 193 67.4
FAN08G0466 Fragaria x ananassa HOM05D006128 ORTHO05D007466 1.8e-65 253.1 193 67.4
FAN18G2733 Fragaria x ananassa HOM05D006128 ORTHO05D007466 1.8e-65 253.1 193 67.4
Gohir.D08G051000 Gossypium hirsutum HOM05D006128 ORTHO05D007466 1.8e-65 253.1 187 67.9
Sabra02G0159200 Salix brachista HOM05D002340 ORTHO05D003624 1.5e-64 250.0 183 69.9
FAN13G2048 Fragaria x ananassa HOM05D006128 ORTHO05D007466 2.0e-64 249.6 193 66.8
FAN04G2463 Fragaria x ananassa HOM05D006128 ORTHO05D007466 5.9e-64 248.1 193 66.3
Potri.014G122900 Populus trichocarpa HOM05D006128 ORTHO05D007466 1.3e-63 246.9 190 67.9
Ciclev10021788m.g Citrus clementina HOM05D006128 ORTHO05D007466 1.7e-63 246.5 188 70.2
TWI36G0171 Tripterygium wilfordii HOM05D006128 ORTHO05D007466 3.8e-63 245.4 188 65.4
Gohir.A08G040900 Gossypium hirsutum HOM05D006128 ORTHO05D007466 8.5e-63 244.2 187 66.3
Cpa.g.sc18.8 Carica papaya HOM05D006128 ORTHO05D007466 1.4e-62 243.4 187 67.4
GSVIVG01028088001 Vitis vinifera HOM05D006128 ORTHO05D007466 4.2e-62 241.9 194 67.5
MD03G1297200 Malus domestica HOM05D006128 ORTHO05D007466 7.2e-62 241.1 192 66.7
MD11G1317000 Malus domestica HOM05D006128 ORTHO05D007466 1.2e-61 240.4 188 67.6
Cfa005831 Carpinus fangiana HOM05D006128 ORTHO05D007466 2.1e-61 239.6 188 67.6
Peaxi162Scf00001g00252 Petunia axillaris HOM05D006128 ORTHO05D007466 2.1e-61 239.6 188 67.6
PGSC0003DMG400009003 Solanum tuberosum HOM05D006128 ORTHO05D007466 4.6e-61 238.4 188 67.6
CAN.G69.3 Capsicum annuum HOM05D006128 ORTHO05D007466 7.9e-61 237.7 194 64.4
Prupe.8G269800 Prunus persica HOM05D006128 ORTHO05D007466 7.9e-61 237.7 188 66.5
RcHm_v2.0_Chr7g0241881 Rosa chinensis HOM05D006128 ORTHO05D007466 7.9e-61 237.7 196 64.3
Sopen01g031420 Solanum pennellii HOM05D006128 ORTHO05D007466 7.9e-61 237.7 188 67.0
Haze_05012 Corylus avellana HOM05D006128 ORTHO05D007466 2.3e-60 236.1 190 66.3
Medtr1g087500 Medicago truncatula HOM05D006128 ORTHO05D007466 3.0e-60 235.7 183 67.8
Lj1A19T25 Lonicera japonica HOM05D006128 ORTHO05D007466 3.9e-60 235.3 190 67.4
Sabra14G0091300 Salix brachista HOM05D006128 ORTHO05D007466 3.9e-60 235.3 177 68.9
Solyc01g079640.4 Solanum lycopersicum HOM05D006128 ORTHO05D007466 3.9e-60 235.3 188 66.5
Ca_10299_v3 Cicer arietinum L. HOM05D006128 ORTHO05D007466 5.1e-60 235.0 192 65.6
Nitab4.5_0000116g0090 Nicotiana tabacum HOM05D006128 ORTHO05D007466 6.7e-60 234.6 188 67.6
COL.COLO4_23260 Corchorus olitorius HOM05D006128 ORTHO05D007466 2.6e-59 232.6 187 66.3
Psat6g163320 Pisum sativum HOM05D006128 ORTHO05D007466 2.6e-59 232.6 188 64.4
TPR.G19756 Trifolium pratense HOM05D006128 ORTHO05D007466 3.3e-59 232.3 181 66.9
Nitab4.5_0000906g0110 Nicotiana tabacum HOM05D006128 ORTHO05D007466 1.3e-58 230.3 188 65.4
TAR633G2533 Trochodendron aralioides HOM05D006128 ORTHO05D007466 2.8e-58 229.2 199 61.8
Hma1.2p1_1302F.1_g274310 Hydrangea macrophylla HOM05D006128 ORTHO05D007466 1.8e-57 226.5 150 77.3
TAR362G1032 Trochodendron aralioides HOM05D006128 ORTHO05D007466 1.8e-57 226.5 199 60.8
Nn3g21633 Nelumbo nucifera HOM05D006128 ORTHO05D007466 2.4e-57 226.1 198 61.1
Cc08_g11810 Coffea canephora HOM05D006128 ORTHO05D007466 3.1e-57 225.7 188 65.4
Lj5g0013562 Lotus japonicus HOM05D006128 ORTHO05D007466 9.1e-57 224.2 184 64.1
Gohir.D11G116100 Gossypium hirsutum HOM05D006128 ORTHO05D007466 2.0e-56 223.0 185 61.6
Gorai.007G124300 Gossypium raimondii HOM05D006128 ORTHO05D007466 2.0e-56 223.0 185 61.6
CiPaw.07G115100 Carya illinoinensis HOM05D006128 ORTHO05D007466 2.6e-56 222.6 195 63.6
arahy.Tifrunner.gnm1.ann1.G5X8S7 Arachis hypogaea HOM05D006128 ORTHO05D007466 5.9e-56 221.5 185 64.3
arahy.Tifrunner.gnm1.ann1.M4G7E6 Arachis hypogaea HOM05D006128 ORTHO05D007466 5.9e-56 221.5 185 64.3
CANSAT35G0097 Cannabis sativa HOM05D006128 ORTHO05D007466 1.4e-54 216.9 192 62.0
ClCG10G011230 Citrullus lanatus HOM05D006128 ORTHO05D007466 1.9e-54 216.5 187 64.7
DCAR_002874 Daucus carota HOM05D006128 ORTHO05D007466 5.5e-54 214.9 188 63.3
CsaV3_4G001120 Cucumis sativus L. HOM05D006128 ORTHO05D007466 3.6e-53 212.2 186 64.5
Eucgr.K03529 Eucalyptus grandis HOM05D006128 ORTHO05D007466 3.6e-53 212.2 178 63.5
Gohir.A11G110900 Gossypium hirsutum HOM05D006128 ORTHO05D007466 4.7e-53 211.8 185 59.5
Glyma.02G014100 Glycine max HOM05D006128 ORTHO05D007466 7.9e-53 211.1 150 70.7
MELO3C032866.2 Cucumis melo HOM05D006128 ORTHO05D007466 6.7e-52 208.0 185 63.8
MBI19_g22894_MAGBIO Magnolia biondii HOM05D006128 ORTHO05D007466 1.5e-51 206.8 202 56.4
Sed0005948 Sechium edule HOM05D006128 ORTHO05D007466 2.0e-51 206.5 185 61.6
Lalb_Chr02g0146681 Lupinus albus HOM05D006128 ORTHO05D007466 4.8e-50 201.8 189 59.3
Hund09615 Selenicereus undatus HOM05D006128 ORTHO05D007466 3.1e-49 199.1 188 58.0
EL10As5g23499 Beta vulgaris HOM05D006128 ORTHO05D007466 1.0e-47 194.1 178 56.7
Sc18g0005360 Simmondsia chinensis HOM05D006128 ORTHO05D007466 1.0e-47 194.1 180 58.3
Oeu008455.2 Olea europaea HOM05D006128 ORTHO05D007466 6.5e-47 191.4 135 72.6
PGR044G1105 Punica granatum HOM05D006128 ORTHO05D007466 1.2e-45 187.2 183 59.0
AUR62011838 Chenopodium quinoa HOM05D006128 ORTHO05D007466 2.7e-45 186.0 178 56.2
VMungo0720G2147 Vigna mungo HOM05D006128 ORTHO05D007466 2.7e-45 186.0 154 64.9
Phvul.007G216000 Phaseolus vulgaris HOM05D006128 ORTHO05D007466 3.6e-45 185.7 154 64.3
AUR62024680 Chenopodium quinoa HOM05D006128 ORTHO05D007466 6.1e-45 184.9 178 55.6
Aqoxy2G02213 Aquilegia oxysepala HOM05D006128 ORTHO05D007466 3.3e-43 179.1 199 51.3
Gorai.008G141200 Gossypium raimondii HOM05D006128 ORTHO05D007466 5.7e-43 178.3 173 59.0
Gohir.A12G126500 Gossypium hirsutum HOM05D006128 ORTHO05D007466 3.7e-42 175.6 173 57.2
Gohir.D12G130000 Gossypium hirsutum HOM05D006128 ORTHO05D007466 3.7e-42 175.6 173 58.4
PSO357G0491 Papaver somniferum HOM05D006128 ORTHO05D007466 3.7e-42 175.6 208 50.5
PSO170G2201 Papaver somniferum HOM05D006128 ORTHO05D007466 1.8e-41 173.3 208 49.5
Lalb_Chr21g0309471 Lupinus albus HOM05D006128 ORTHO05D007466 1.6e-40 170.2 156 62.8
THA.LOC104801298 Tarenaya hassleriana HOM05D006128 ORTHO05D007466 1.6e-40 170.2 184 53.3
Migut.D00098 Erythranthe guttata HOM05D006128 ORTHO05D007466 2.0e-40 169.9 178 56.2
Glyma.10G014800 Glycine max HOM05D006128 ORTHO05D007466 1.8e-36 156.8 151 58.3
Ah.02g112110 Amaranthus hybridus HOM05D006128 ORTHO05D007466 2.3e-36 156.4 176 50.0
HanXRQChr15g0464211 Helianthus annuus HOM05D006128 ORTHO05D007466 6.8e-36 154.8 187 53.5
Aa31LG5G1800 Aethionema arabicum HOM05D004824 ORTHO05D007466 2.6e-35 152.9 196 50.0
AL4G17994 Arabidopsis lyrata HOM05D006128 ORTHO05D007466 4.4e-35 152.1 191 50.3
AT2G25920 Arabidopsis thaliana HOM05D006128 ORTHO05D007466 2.8e-34 149.4 193 49.2
MSTRG.18115 Avicennia marina HOM05D006128 ORTHO05D007466 4.1e-33 145.6 153 54.9
A03p31200 Brassica napus HOM05D006128 ORTHO05D007466 2.7e-32 142.9 183 50.8
BraA03t12299Z Brassica rapa HOM05D006128 ORTHO05D007466 2.7e-32 142.9 183 50.8
Carub.0004s0574 Capsella rubella HOM05D006128 ORTHO05D007466 3.5e-32 142.5 194 49.5
BcaB01g02428 Brassica carinata HOM05D006128 ORTHO05D007466 4.5e-32 142.1 188 48.9
SGA_v2.0_scaffold376G50266 Striga asiatica HOM05D006128 ORTHO05D007466 5.0e-31 138.7 122 62.3
Sp6g02010 Schrenkiella parvula HOM05D006128 ORTHO05D007466 1.1e-30 137.5 184 47.8
BcaC01g06774 Brassica carinata HOM05D006128 ORTHO05D007466 1.5e-30 137.1 184 46.7
C03p38040 Brassica napus HOM05D006128 ORTHO05D007466 1.5e-30 137.1 184 46.7
BolC3t16089H Brassica oleracea HOM05D006128 ORTHO05D007466 1.5e-30 137.1 184 46.7
unitig_52.g16838 Utricularia gibba HOM05D006128 ORTHO05D007466 2.5e-30 136.3 184 48.9
ECA236G3461 Erigeron canadensis HOM05D001958 ORTHO05D001971 4.7e-29 132.1 126 60.3
CARHR290820 Cardamine hirsuta HOM05D006128 ORTHO05D007466 6.1e-29 131.7 187 47.1
Thhalv10028896m.g Eutrema salsugineum HOM05D006128 ORTHO05D007466 6.1e-29 131.7 189 47.1
Lsat_1_v5_gn_8_166381 Lactuca sativa HOM05D001134 ORTHO05D001035 8.0e-29 131.3 197 47.7
SHI19763 Sapria himalayana HOM05D006128 ORTHO05D007466 6.8e-28 128.3 177 46.3
CARHR290840 Cardamine hirsuta HOM05D006128 ORTHO05D007466 5.4e-25 118.6 187 44.4
CDE11G0626 Ceratophyllum demersum HOM05D006128 ORTHO05D007466 7.0e-25 118.2 168 46.4
Sc18g0005490 Simmondsia chinensis HOM05D006128 ORTHO05D007466 3.5e-24 115.9 112 60.7
ATR0706G106 Amborella trichopoda HOM05D006128 ORTHO05D007466 2.3e-23 113.2 200 39.5
CDE05G1506 Ceratophyllum demersum HOM05D006128 ORTHO05D007466 5.0e-23 112.1 168 44.6
Zm00001eb345660 Zea mays HOM05D006128 ORTHO05D007466 1.0e-20 104.4 181 40.3
Os05g0156200 Oryza sativa ssp. japonica HOM05D006128 ORTHO05D007466 2.9e-18 96.3 189 39.7
HPP92_016959 Vanilla planifolia HOM05D006128 ORTHO05D007466 6.4e-18 95.1 177 40.1
Zm00001eb340800 Zea mays HOM05D006128 ORTHO05D007466 8.3e-18 94.7 123 50.4
Pp3c3_2220 Physcomitrium patens HOM05D006128 ORTHO05D007466 8.6e-15 84.7 129 47.3
A03p31210 Brassica napus HOM05D000040 ORTHO05D000267 3.3e-14 82.8 97 54.6
Pp3c13_5550 Physcomitrium patens HOM05D006128 ORTHO05D007466 4.7e-13 79.0 126 46.0
CARHR290830 Cardamine hirsuta HOM05D006128 ORTHO05D007466 2.9e-10 69.7 73 56.2
Mapoly0184s0013 Marchantia polymorpha HOM05D006128 ORTHO05D007466 2.9e-10 69.7 131 42.7
C03p38050 Brassica napus HOM05D006128 ORTHO05D007466 5.4e-09 65.5 50 64.0
BolC3t16090H Brassica oleracea HOM05D006128 ORTHO05D007466 1.7e-07 60.5 43 65.1
BraA03t12301Z Brassica rapa HOM05D006128 ORTHO05D007466 3.9e-07 59.3 43 65.1
AagrBONN_evm.TU.Sc2ySwM_228.1223 Anthoceros agrestis HOM05D006128 ORTHO05D007466 7.3e-06 55.1 124 33.9


User provided reference genes

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