Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0004068 Camellia sinensis var. sinensis HOM05D005701 ORTHO05D007058 2.5e-74 282.0 135 100.0
CSS0017429 Camellia sinensis var. sinensis HOM05D005701 ORTHO05D007058 1.0e-43 180.3 189 56.6
Actinidia24310 Actinidia chinensis HOM05D005701 ORTHO05D007058 9.6e-34 147.1 189 47.6
vmacro02538 Vaccinium macrocarpon HOM05D005701 ORTHO05D007058 2.1e-33 146.0 189 48.1
Rhsim13G0021200 Rhododendron simsii HOM05D005701 ORTHO05D007058 7.1e-29 131.0 181 43.1
Dinv11265 Davidia involucrata HOM05D005701 ORTHO05D007058 2.1e-28 129.4 189 42.9
Cfa006081 Carpinus fangiana HOM05D005701 ORTHO05D007058 1.0e-27 127.1 184 42.9
Sed0003723 Sechium edule HOM05D005701 ORTHO05D007058 1.0e-27 127.1 177 45.8
Gohir.A12G006700 Gossypium hirsutum HOM05D005701 ORTHO05D007058 1.3e-27 126.7 182 45.1
CiPaw.08G102100 Carya illinoinensis HOM05D005701 ORTHO05D007058 2.3e-27 125.9 184 41.8
ClCG09G006770 Citrullus lanatus HOM05D005701 ORTHO05D007058 2.3e-27 125.9 188 43.6
Thecc.01G285600 Theobroma cacao HOM05D005701 ORTHO05D007058 3.9e-27 125.2 186 43.0
Haze_04768 Corylus avellana HOM05D005701 ORTHO05D007058 1.9e-26 122.9 206 39.8
TWI59G0853 Tripterygium wilfordii HOM05D005701 ORTHO05D007058 3.3e-26 122.1 186 43.0
Duzib138G1703 Durio zibethinus HOM05D005701 ORTHO05D007058 5.6e-26 121.3 184 42.4
Ciclev10022400m.g Citrus clementina HOM05D005701 ORTHO05D007058 1.3e-25 120.2 187 40.6
Lsat_1_v5_gn_5_187740 Lactuca sativa HOM05D005701 ORTHO05D007058 1.3e-25 120.2 184 38.0
Lalb_Chr06g0163181 Lupinus albus HOM05D005701 ORTHO05D007058 1.3e-25 120.2 188 41.5
CsaV3_7G028500 Cucumis sativus L. HOM05D005701 ORTHO05D007058 1.6e-25 119.8 190 42.6
Oeu006228.1 Olea europaea HOM05D005701 ORTHO05D007058 3.6e-25 118.6 180 41.7
Sc24g0004070 Simmondsia chinensis HOM05D005701 ORTHO05D007058 4.8e-25 118.2 184 41.8
MELO3C015871.2 Cucumis melo HOM05D005701 ORTHO05D007058 6.2e-25 117.9 177 44.1
ECA248G0764 Erigeron canadensis HOM05D005701 ORTHO05D007058 8.1e-25 117.5 183 41.5
QL02p002445 Quercus lobata HOM05D005701 ORTHO05D007058 8.1e-25 117.5 181 42.5
BolC9t53172H Brassica oleracea HOM05D005701 ORTHO05D007058 1.8e-24 116.3 178 42.7
AT4G02980 Arabidopsis thaliana HOM05D005701 ORTHO05D007058 2.4e-24 115.9 185 42.2
A09p02300 Brassica napus HOM05D005701 ORTHO05D007058 2.4e-24 115.9 181 43.1
BraA09t35879Z Brassica rapa HOM05D005701 ORTHO05D007058 2.4e-24 115.9 181 43.1
Potri.002G212400 Populus trichocarpa HOM05D005701 ORTHO05D007058 2.4e-24 115.9 190 41.6
C09p02410 Brassica napus HOM05D005701 ORTHO05D007058 5.3e-24 114.8 178 42.7
MD03G1271500 Malus domestica HOM05D005701 ORTHO05D007058 5.3e-24 114.8 187 41.2
AL6G49950 Arabidopsis lyrata HOM05D005701 ORTHO05D007058 9.0e-24 114.0 177 41.8
Sp6g03020 Schrenkiella parvula HOM05D005701 ORTHO05D007058 9.0e-24 114.0 181 42.5
GSVIVG01011062001 Vitis vinifera HOM05D005701 ORTHO05D007058 9.0e-24 114.0 181 39.8
Hund06566 Selenicereus undatus HOM05D005701 ORTHO05D007058 1.2e-23 113.6 185 40.0
MD11G1292100 Malus domestica HOM05D005701 ORTHO05D007058 2.0e-23 112.8 191 42.4
PSO302G0130 Papaver somniferum HOM05D005701 ORTHO05D007058 2.6e-23 112.5 192 40.6
THA.LOC104801212 Tarenaya hassleriana HOM05D005701 ORTHO05D007058 2.6e-23 112.5 170 40.0
CANSAT25G0672 Cannabis sativa HOM05D005701 ORTHO05D007058 3.4e-23 112.1 186 41.4
SalBow6G2366 Salvia bowleyana HOM05D005701 ORTHO05D007058 3.4e-23 112.1 180 39.4
Carub.0006s3407 Capsella rubella HOM05D005701 ORTHO05D007058 4.5e-23 111.7 183 39.9
THA.LOC104826003 Tarenaya hassleriana HOM05D005701 ORTHO05D007058 4.5e-23 111.7 187 38.5
Ah.08g212880 Amaranthus hybridus HOM05D005701 ORTHO05D007058 5.8e-23 111.3 191 41.9
Thhalv10028980m.g Eutrema salsugineum HOM05D005701 ORTHO05D007058 7.6e-23 110.9 164 41.5
Glyma.02G150100 Glycine max HOM05D005701 ORTHO05D007058 7.6e-23 110.9 182 39.0
Aqoxy2G03192 Aquilegia oxysepala HOM05D005701 ORTHO05D007058 9.9e-23 110.5 183 39.3
PSO170G3928 Papaver somniferum HOM05D005701 ORTHO05D007058 9.9e-23 110.5 186 39.8
Eucgr.H01544 Eucalyptus grandis HOM05D005701 ORTHO05D007058 1.3e-22 110.2 173 42.2
BcaC01g06714 Brassica carinata HOM05D005701 ORTHO05D007058 1.7e-22 109.8 183 39.9
C03p37390 Brassica napus HOM05D005701 ORTHO05D007058 1.7e-22 109.8 177 40.7
BolC3t16031H Brassica oleracea HOM05D005701 ORTHO05D007058 1.7e-22 109.8 177 40.7
BraA03t12248Z Brassica rapa HOM05D005701 ORTHO05D007058 2.2e-22 109.4 183 40.4
Aa31LG5G2530 Aethionema arabicum HOM05D005701 ORTHO05D007058 4.9e-22 108.2 187 39.0
A03p30690 Brassica napus HOM05D005701 ORTHO05D007058 4.9e-22 108.2 177 40.7
HanXRQChr14g0430981 Helianthus annuus HOM05D005701 ORTHO05D007058 4.9e-22 108.2 187 37.4
MSTRG.17433 Avicennia marina HOM05D005701 ORTHO05D007058 6.4e-22 107.8 184 39.7
Hma1.2p1_0628F.1_g191820 Hydrangea macrophylla HOM05D005701 ORTHO05D007058 6.4e-22 107.8 160 43.8
PGR119G1915 Punica granatum HOM05D005701 ORTHO05D007058 8.4e-22 107.5 184 40.2
Ca_10397_v3 Cicer arietinum L. HOM05D005701 ORTHO05D007058 1.1e-21 107.1 164 40.9
Manes.05G072000 Manihot esculenta HOM05D005701 ORTHO05D007058 1.1e-21 107.1 185 38.9
Phvul.007G168600 Phaseolus vulgaris HOM05D005701 ORTHO05D007058 1.1e-21 107.1 185 38.4
EL10Ac7g17192 Beta vulgaris HOM05D005701 ORTHO05D007058 1.4e-21 106.7 183 39.9
BcaB01g02494 Brassica carinata HOM05D005701 ORTHO05D007058 3.2e-21 105.5 164 40.9
Solyc06g084390.3 Solanum lycopersicum HOM05D005701 ORTHO05D007058 3.2e-21 105.5 184 38.0
Sopen06g035780 Solanum pennellii HOM05D005701 ORTHO05D007058 3.2e-21 105.5 184 38.0
PGSC0003DMG401020044 Solanum tuberosum HOM05D005701 ORTHO05D007058 3.2e-21 105.5 184 37.5
Lj2A1180T63 Lonicera japonica HOM05D005701 ORTHO05D007058 4.2e-21 105.1 178 39.3
Medtr1g089810 Medicago truncatula HOM05D005701 ORTHO05D007058 4.2e-21 105.1 184 35.9
Lj5g0014836 Lotus japonicus HOM05D005701 ORTHO05D007058 7.1e-21 104.4 187 35.3
TPR.G26671 Trifolium pratense HOM05D005701 ORTHO05D007058 7.1e-21 104.4 189 37.0
FAN24G1361 Fragaria x ananassa HOM05D005701 ORTHO05D007058 1.2e-20 103.6 184 40.8
FAN15G1986 Fragaria x ananassa HOM05D005701 ORTHO05D007058 1.6e-20 103.2 187 41.2
FAN27G2557 Fragaria x ananassa HOM05D005701 ORTHO05D007058 1.6e-20 103.2 191 39.8
Nitab4.5_0002093g0100 Nicotiana tabacum HOM05D005701 ORTHO05D007058 2.1e-20 102.8 194 36.6
FAN20G1753 Fragaria x ananassa HOM05D005701 ORTHO05D007058 2.7e-20 102.4 184 40.8
CARHR251350 Cardamine hirsuta HOM05D005701 ORTHO05D007058 3.5e-20 102.1 160 40.0
Nn1g02106 Nelumbo nucifera HOM05D005701 ORTHO05D007058 3.5e-20 102.1 170 41.8
Nitab4.5_0010603g0020 Nicotiana tabacum HOM05D005701 ORTHO05D007058 4.6e-20 101.7 172 36.6
Psat6g169920 Pisum sativum HOM05D005701 ORTHO05D007058 4.6e-20 101.7 192 38.5
Prupe.8G247700 Prunus persica HOM05D005701 ORTHO05D007058 6.0e-20 101.3 190 36.8
TAR365G0921 Trochodendron aralioides HOM05D005701 ORTHO05D007058 7.9e-20 100.9 161 39.1
ECA248G1579 Erigeron canadensis HOM05D005701 ORTHO05D007058 3.9e-19 98.6 192 37.0
HPP92_017198 Vanilla planifolia HOM05D005701 ORTHO05D051565 6.7e-19 97.8 137 43.8
Cc01_g05150 Coffea canephora HOM05D005701 ORTHO05D007058 8.7e-19 97.4 162 39.5
Peaxi162Scf00783g00418 Petunia axillaris HOM05D005701 ORTHO05D007058 8.7e-19 97.4 161 39.1
RcHm_v2.0_Chr6g0291961 Rosa chinensis HOM05D005701 ORTHO05D007058 1.1e-18 97.1 186 38.2
Migut.N02139 Erythranthe guttata HOM05D005701 ORTHO05D007058 1.5e-18 96.7 191 36.1
Migut.N02175 Erythranthe guttata HOM05D005701 ORTHO05D007058 2.5e-18 95.9 184 36.4
CAN.G1682.11 Capsicum annuum HOM05D005701 ORTHO05D007058 4.3e-18 95.1 163 38.0
Migut.D00251 Erythranthe guttata HOM05D005701 ORTHO05D007058 4.3e-18 95.1 194 36.6
Thecc.01G285700 Theobroma cacao HOM05D005701 ORTHO05D007058 3.6e-17 92.0 183 35.0
AUR62036778 Chenopodium quinoa HOM05D005701 ORTHO05D007058 8.1e-17 90.9 230 32.2
SGA_v2.0_scaffold1G00437 Striga asiatica HOM05D005701 ORTHO05D007058 2.4e-16 89.4 194 33.0
HPP92_010620 Vanilla planifolia HOM05D005701 ORTHO05D007058 4.5e-15 85.1 183 37.7
Cc00_g05320 Coffea canephora HOM05D005701 ORTHO05D007058 7.6e-15 84.3 166 33.1
Atru.chr5.1332 Acer truncatum HOM05D005701 ORTHO05D007058 9.9e-15 84.0 57 70.2
Gorai.008G006100 Gossypium raimondii HOM05D005701 ORTHO05D007058 4.9e-14 81.6 61 65.6
Gohir.D12G006100 Gossypium hirsutum HOM05D005701 ORTHO05D007058 6.4e-14 81.3 57 71.9
SalBow3G3506 Salvia bowleyana HOM05D005701 ORTHO05D007058 6.4e-14 81.3 163 32.5
Cpa.g.sc9.126 Carica papaya HOM05D005701 ORTHO05D007058 8.4e-14 80.9 60 66.7
vmacro02539 Vaccinium macrocarpon HOM05D005701 ORTHO05D007058 2.4e-13 79.3 66 66.7
Manes.01G211300 Manihot esculenta HOM05D005701 ORTHO05D007058 4.2e-13 78.6 51 66.7
unitig_8.g3319 Utricularia gibba HOM05D005701 ORTHO05D007058 4.2e-13 78.6 186 33.3
Zm00001eb137840 Zea mays HOM05D005701 ORTHO05D007058 9.3e-13 77.4 187 33.7
Zm00001eb410800 Zea mays HOM05D005701 ORTHO05D007058 9.3e-13 77.4 158 36.1
BcaB01g01993 Brassica carinata HOM05D005701 ORTHO05D007058 1.6e-12 76.6 141 39.7
Zm00001eb410760 Zea mays HOM05D005701 ORTHO05D007058 3.5e-12 75.5 166 34.9
Os12g0529400 Oryza sativa ssp. japonica HOM05D005701 ORTHO05D007058 6.0e-12 74.7 158 33.5
CDE08G1024 Ceratophyllum demersum HOM05D005701 ORTHO05D007058 7.9e-12 74.3 159 35.2
FvH4_2g24150 Fragaria vesca HOM05D005701 ORTHO05D007058 1.0e-11 73.9 56 64.3
TPR.G13316 Trifolium pratense HOM05D005701 ORTHO05D007058 1.0e-11 73.9 240 27.5
Rhsim13G0021400 Rhododendron simsii HOM05D005701 ORTHO05D007058 2.3e-11 72.8 35 85.7
Rhsim13G0021300 Rhododendron simsii HOM05D005701 ORTHO05D007058 6.7e-11 71.2 205 28.8
VMungo0720G2830 Vigna mungo HOM05D005701 ORTHO05D007058 8.7e-11 70.9 59 59.3
C09p02610 Brassica napus HOM05D005701 ORTHO05D007058 1.9e-10 69.7 35 80.0
Oeu047892.2 Olea europaea HOM05D005701 ORTHO05D007058 7.4e-10 67.8 58 63.8
Ah.04g164000 Amaranthus hybridus HOM05D005701 ORTHO05D007058 9.6e-10 67.4 35 77.1
MBI19_g33449_MAGBIO Magnolia biondii HOM05D005701 ORTHO05D007058 1.3e-09 67.0 36 80.6
MBI19_g39288_MAGBIO Magnolia biondii HOM05D005701 ORTHO05D007058 1.3e-09 67.0 36 80.6
Cc01_g03720 Coffea canephora HOM05D005701 ORTHO05D007058 6.2e-09 64.7 36 77.8
SGA_v2.0_scaffold172G39038 Striga asiatica HOM05D005701 ORTHO05D007058 1.1e-08 63.9 64 53.1
ATR0626G241 Amborella trichopoda HOM05D005701 ORTHO05D007058 1.4e-08 63.5 58 51.7
Lsat_1_v5_gn_4_17561 Lactuca sativa HOM05D005701 ORTHO05D007058 1.4e-08 63.5 86 41.9
CAN.G996.16 Capsicum annuum HOM05D005701 ORTHO05D007058 2.4e-08 62.8 59 50.8
SMO164G0245 Selaginella moellendorffii HOM05D005701 ORTHO05D007058 3.1e-08 62.4 40 60.0
MSTRG.12575 Avicennia marina HOM05D005701 ORTHO05D007058 4.0e-08 62.0 63 49.2
Os12g0529300 Oryza sativa ssp. japonica HOM05D005701 ORTHO05D007058 3.8e-06 55.5 35 68.6


User provided reference genes

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