Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0004055 Camellia sinensis var. sinensis HOM05D004703 ORTHO05D005801 4.3e-55 217.6 100 100.0
CSS0042147 Camellia sinensis var. sinensis HOM05D004703 ORTHO05D005801 6.9e-21 104.0 57 89.5
CSS0006775 Camellia sinensis var. sinensis HOM05D004703 ORTHO05D005801 1.2e-20 103.2 71 76.1
Dinv37721 Davidia involucrata HOM05D004703 ORTHO05D005801 3.8e-19 98.2 57 82.5
vmacro19246 Vaccinium macrocarpon HOM05D004703 ORTHO05D005801 4.9e-19 97.8 57 80.7
COL.COLO4_23815 Corchorus olitorius HOM05D004703 ORTHO05D005801 1.4e-18 96.3 57 77.2
Duzib084G1157 Durio zibethinus HOM05D004703 ORTHO05D005801 1.4e-18 96.3 57 77.2
Rhsim08G0184400 Rhododendron simsii HOM05D004703 ORTHO05D005801 1.4e-18 96.3 57 80.7
Thecc.03G266100 Theobroma cacao HOM05D004703 ORTHO05D005801 1.4e-18 96.3 57 77.2
Gohir.A09G193900 Gossypium hirsutum HOM05D004703 ORTHO05D005801 4.2e-18 94.7 57 75.4
Gorai.006G210900 Gossypium raimondii HOM05D004703 ORTHO05D005801 4.2e-18 94.7 57 75.4
QL12p016126 Quercus lobata HOM05D004703 ORTHO05D005801 4.2e-18 94.7 57 77.2
QL12p016291 Quercus lobata HOM05D004703 ORTHO05D005801 4.2e-18 94.7 57 77.2
SalBow6G2643 Salvia bowleyana HOM05D004703 ORTHO05D005801 4.2e-18 94.7 59 78.0
AT4G11980 Arabidopsis thaliana HOM05D004703 ORTHO05D005801 5.4e-18 94.4 57 77.2
HanXRQChr07g0186971 Helianthus annuus HOM05D004703 ORTHO05D005801 7.1e-18 94.0 57 77.2
Nn1g00505 Nelumbo nucifera HOM05D004703 ORTHO05D005801 7.1e-18 94.0 57 75.4
Oeu001909.1 Olea europaea HOM05D004703 ORTHO05D005801 7.1e-18 94.0 57 78.9
VMungo0251G1252 Vigna mungo HOM05D004703 ORTHO05D005801 7.1e-18 94.0 57 75.4
Actinidia14493 Actinidia chinensis HOM05D004703 ORTHO05D005801 9.3e-18 93.6 57 78.9
DCAR_006785 Daucus carota HOM05D004703 ORTHO05D005801 9.3e-18 93.6 57 77.2
Hma1.2p1_0138F.1_g062820 Hydrangea macrophylla HOM05D004703 ORTHO05D005801 9.3e-18 93.6 57 75.4
Lalb_Chr05g0225211 Lupinus albus HOM05D004703 ORTHO05D005801 9.3e-18 93.6 57 73.7
Haze_13993 Corylus avellana HOM05D004703 ORTHO05D005801 1.2e-17 93.2 57 75.4
Migut.A00879 Erythranthe guttata HOM05D004703 ORTHO05D005801 1.2e-17 93.2 57 77.2
Lj2A203G54 Lonicera japonica HOM05D004703 ORTHO05D005801 1.2e-17 93.2 57 77.2
PGSC0003DMG400003941 Solanum tuberosum HOM05D004703 ORTHO05D005801 1.2e-17 93.2 57 73.7
THA.LOC104806355 Tarenaya hassleriana HOM05D004703 ORTHO05D005801 1.2e-17 93.2 57 77.2
TWI15G0205 Tripterygium wilfordii HOM05D004703 ORTHO05D005801 1.2e-17 93.2 57 75.4
Carub.0006s3108 Capsella rubella HOM05D004703 ORTHO05D005801 1.6e-17 92.8 57 75.4
Cpa.g.sc29.48 Carica papaya HOM05D004703 ORTHO05D005801 1.6e-17 92.8 57 75.4
ECA233G5834 Erigeron canadensis HOM05D004703 ORTHO05D005801 1.6e-17 92.8 57 75.4
FvH4_5g01080 Fragaria vesca HOM05D004703 ORTHO05D005801 1.6e-17 92.8 57 77.2
Gohir.D09G188100 Gossypium hirsutum HOM05D004703 ORTHO05D005801 1.6e-17 92.8 57 73.7
RcHm_v2.0_Chr4g0403961 Rosa chinensis HOM05D004703 ORTHO05D005801 1.6e-17 92.8 57 75.4
Sp6g05530 Schrenkiella parvula HOM05D004703 ORTHO05D005801 1.6e-17 92.8 57 75.4
AL6G46750 Arabidopsis lyrata HOM05D004703 ORTHO05D005801 2.1e-17 92.4 57 75.4
CDE04G3458 Ceratophyllum demersum HOM05D004703 ORTHO05D005801 2.1e-17 92.4 57 75.4
Ca_12294_v3 Cicer arietinum L. HOM05D004703 ORTHO05D005801 2.1e-17 92.4 57 73.7
FAN08G2483 Fragaria x ananassa HOM05D004703 ORTHO05D005801 2.1e-17 92.4 57 75.4
FAN13G0401 Fragaria x ananassa HOM05D004703 ORTHO05D005801 2.1e-17 92.4 57 75.4
Nitab4.5_0005167g0040 Nicotiana tabacum HOM05D004703 ORTHO05D005801 2.1e-17 92.4 57 73.7
Nitab4.5_0012494g0020 Nicotiana tabacum HOM05D004703 ORTHO05D005801 2.1e-17 92.4 57 73.7
SGA_v2.0_scaffold37G14871 Striga asiatica HOM05D004703 ORTHO05D005801 2.1e-17 92.4 55 80.0
arahy.Tifrunner.gnm1.ann1.RRY62Q Arachis hypogaea HOM05D004703 ORTHO05D005801 2.7e-17 92.0 57 75.4
CiPaw.11G143800 Carya illinoinensis HOM05D004703 ORTHO05D005801 2.7e-17 92.0 57 73.7
Phvul.003G216900 Phaseolus vulgaris HOM05D004703 ORTHO05D005801 2.7e-17 92.0 57 75.4
CARHR254310 Cardamine hirsuta HOM05D004703 ORTHO05D005801 3.5e-17 91.7 57 73.7
AUR62010550 Chenopodium quinoa HOM05D004703 ORTHO05D005801 3.5e-17 91.7 57 75.4
Eucgr.E00504 Eucalyptus grandis HOM05D004703 ORTHO05D005801 3.5e-17 91.7 57 75.4
Glyma.05G054900 Glycine max HOM05D004703 ORTHO05D005801 3.5e-17 91.7 57 73.7
RcHm_v2.0_Chr7g0200241 Rosa chinensis HOM05D004703 ORTHO05D005801 3.5e-17 91.7 57 77.2
AUR62017343 Chenopodium quinoa HOM05D004703 ORTHO05D005801 4.6e-17 91.3 57 73.7
FAN18G3460 Fragaria x ananassa HOM05D004703 ORTHO05D005801 4.6e-17 91.3 57 77.2
VMungo0251G1928 Vigna mungo HOM05D004703 ORTHO05D005801 4.6e-17 91.3 57 73.7
Glyma.05G054800 Glycine max HOM05D004703 ORTHO05D005801 6.0e-17 90.9 57 73.7
MBI04_g28556_MAGBIO Magnolia biondii HOM05D004703 ORTHO05D005801 6.0e-17 90.9 57 75.4
Sopen08g028180 Solanum pennellii HOM05D004703 ORTHO05D005801 6.0e-17 90.9 57 71.9
Sc07g0009460 Simmondsia chinensis HOM05D004703 ORTHO05D005801 7.9e-17 90.5 57 75.4
Thhalv10028825m.g Eutrema salsugineum HOM05D004703 ORTHO05D005801 1.0e-16 90.1 57 73.7
Medtr4g101830 Medicago truncatula HOM05D004703 ORTHO05D005801 1.0e-16 90.1 57 71.9
TAR629G2760 Trochodendron aralioides HOM05D004703 ORTHO05D005801 1.0e-16 90.1 57 73.7
MSTRG.25560 Avicennia marina HOM05D004703 ORTHO05D005801 1.3e-16 89.7 57 71.9
Cc08_g13610 Coffea canephora HOM05D004703 ORTHO05D005801 1.3e-16 89.7 57 73.7
Lj4g0003091 Lotus japonicus HOM05D004703 ORTHO05D005801 1.3e-16 89.7 57 70.2
Prupe.5G084800 Prunus persica HOM05D004703 ORTHO05D005801 1.3e-16 89.7 57 75.4
CANSAT21G0478 Cannabis sativa HOM05D004703 ORTHO05D005801 1.8e-16 89.4 57 71.9
MD04G1073000 Malus domestica HOM05D004703 ORTHO05D005801 1.8e-16 89.4 57 73.7
Psat4g069480 Pisum sativum HOM05D004703 ORTHO05D005801 1.8e-16 89.4 57 71.9
PGR042G1634 Punica granatum HOM05D004703 ORTHO05D005801 1.8e-16 89.4 57 71.9
Zm00001eb378400 Zea mays HOM05D004703 ORTHO05D005801 1.8e-16 89.4 57 75.4
Haze_09002 Corylus avellana HOM05D004703 ORTHO05D005801 2.3e-16 89.0 59 72.9
MELO3C005608.2 Cucumis melo HOM05D004703 ORTHO05D005801 2.3e-16 89.0 57 73.7
CsaV3_5G003450 Cucumis sativus L. HOM05D004703 ORTHO05D005801 2.3e-16 89.0 57 73.7
Os06g0129700 Oryza sativa ssp. japonica HOM05D004703 ORTHO05D005801 2.3e-16 89.0 57 73.7
TPR.G37619 Trifolium pratense HOM05D004703 ORTHO05D005801 2.3e-16 89.0 57 71.9
ClCG01G003390 Citrullus lanatus HOM05D004703 ORTHO05D005801 3.0e-16 88.6 57 71.9
Solyc08g079820.3 Solanum lycopersicum HOM05D004703 ORTHO05D005801 3.0e-16 88.6 57 70.2
arahy.Tifrunner.gnm1.ann1.HPWZ3I Arachis hypogaea HOM05D004703 ORTHO05D005801 3.9e-16 88.2 57 71.9
Ciclev10021310m.g Citrus clementina HOM05D004703 ORTHO05D005801 3.9e-16 88.2 57 71.9
Hund14696 Selenicereus undatus HOM05D004703 ORTHO05D005801 3.9e-16 88.2 57 73.7
GSVIVG01019903001 Vitis vinifera HOM05D004703 ORTHO05D005801 3.9e-16 88.2 57 70.2
Lsat_1_v5_gn_6_10661 Lactuca sativa HOM05D004703 ORTHO05D005801 6.7e-16 87.4 57 70.2
RcHm_v2.0_Chr0c37g0502981 Rosa chinensis HOM05D004703 ORTHO05D005801 6.7e-16 87.4 57 73.7
RcHm_v2.0_Chr6g0265101 Rosa chinensis HOM05D004703 ORTHO05D005801 6.7e-16 87.4 57 73.7
RcHm_v2.0_Chr6g0265181 Rosa chinensis HOM05D004703 ORTHO05D005801 6.7e-16 87.4 57 73.7
Sed0028019 Sechium edule HOM05D004703 ORTHO05D005801 6.7e-16 87.4 57 70.2
BcaB01g01695 Brassica carinata HOM05D004703 ORTHO05D005801 8.7e-16 87.0 58 74.1
BcaC04g21182 Brassica carinata HOM05D004703 ORTHO05D005801 8.7e-16 87.0 58 72.4
C09p34490 Brassica napus HOM05D004703 ORTHO05D005801 8.7e-16 87.0 58 72.4
BolC9t56293H Brassica oleracea HOM05D004703 ORTHO05D005801 8.7e-16 87.0 58 72.4
Atru.chr9.1491 Acer truncatum HOM05D004703 ORTHO05D005801 1.1e-15 86.7 57 71.9
A09p27170 Brassica napus HOM05D004703 ORTHO05D005801 1.1e-15 86.7 58 72.4
Ah.02g116260 Amaranthus hybridus HOM05D004703 ORTHO05D005801 1.9e-15 85.9 57 68.4
Manes.01G070700 Manihot esculenta HOM05D004703 ORTHO05D005801 1.9e-15 85.9 57 70.2
Potri.003G118300 Populus trichocarpa HOM05D004703 ORTHO05D005801 1.9e-15 85.9 57 66.7
CAN.G630.24 Capsicum annuum HOM05D004703 ORTHO05D005801 2.5e-15 85.5 55 70.9
EL10Ac5g12672 Beta vulgaris HOM05D004703 ORTHO05D005801 3.3e-15 85.1 57 66.7
Sabra03G0082300 Salix brachista HOM05D004703 ORTHO05D005801 7.4e-15 84.0 57 64.9
PSO478G3008 Papaver somniferum HOM05D004703 ORTHO05D005801 9.6e-15 83.6 57 68.4
Aqoxy7G00537 Aquilegia oxysepala HOM05D004703 ORTHO05D005801 1.3e-14 83.2 57 70.2
HPP92_020651 Vanilla planifolia HOM05D004703 ORTHO05D005801 1.6e-14 82.8 57 68.4
unitig_22.g5479 Utricularia gibba HOM05D004703 ORTHO05D005801 2.1e-14 82.4 58 70.7
PSO782G3959 Papaver somniferum HOM05D004703 ORTHO05D005801 6.2e-14 80.9 57 66.7
Ah.12g053460 Amaranthus hybridus HOM05D004703 ORTHO05D005801 8.1e-14 80.5 59 66.1
Ah.12g057950 Amaranthus hybridus HOM05D004703 ORTHO05D005801 8.1e-14 80.5 59 66.1
Peaxi162Scf00620g00231 Petunia axillaris HOM05D004703 ORTHO05D005801 2.4e-13 79.0 82 51.2
PSO478G3534 Papaver somniferum HOM05D004703 ORTHO05D005801 6.9e-13 77.4 57 64.9
CBR_g30593 Chara braunii HOM05D004703 ORTHO05D005801 1.2e-12 76.6 55 63.6
SMO140G0070 Selaginella moellendorffii HOM05D004703 ORTHO05D005801 2.0e-12 75.9 55 67.3
Pp3c15_11750 Physcomitrium patens HOM05D004703 ORTHO05D005801 3.4e-12 75.1 55 63.6
RcHm_v2.0_Chr4g0425481 Rosa chinensis HOM05D004703 ORTHO05D005801 4.5e-12 74.7 49 73.5
AagrBONN_evm.TU.Sc2ySwM_344.4389 Anthoceros agrestis HOM05D004703 ORTHO05D005801 5.8e-12 74.3 55 65.5
Mapoly0093s0020 Marchantia polymorpha HOM05D004703 ORTHO05D005801 1.0e-11 73.6 55 60.0
BcaB02g11533 Brassica carinata HOM05D004703 ORTHO05D005801 9.6e-07 57.0 43 72.1
arahy.Tifrunner.gnm1.ann1.L680XF Arachis hypogaea HOM05D004703 ORTHO05D005801 2.1e-06 55.8 43 67.4
arahy.Tifrunner.gnm1.ann1.QV6CQV Arachis hypogaea HOM05D004703 ORTHO05D005801 2.8e-06 55.5 32 81.2
arahy.Tifrunner.gnm1.ann1.R8Q162 Arachis hypogaea HOM05D004703 ORTHO05D005801 2.8e-06 55.5 32 81.2
arahy.Tifrunner.gnm1.ann1.TVWC12 Arachis hypogaea HOM05D004703 ORTHO05D005801 2.8e-06 55.5 32 81.2
arahy.Tifrunner.gnm1.ann1.UX21TB Arachis hypogaea HOM05D004703 ORTHO05D005801 2.8e-06 55.5 32 81.2
arahy.Tifrunner.gnm1.ann1.YD44XK Arachis hypogaea HOM05D004703 ORTHO05D005801 2.8e-06 55.5 32 81.2
arahy.Tifrunner.gnm1.ann1.KBZV3C Arachis hypogaea HOM05D004703 ORTHO05D005801 3.7e-06 55.1 31 83.9
arahy.Tifrunner.gnm1.ann1.WGQ9HG Arachis hypogaea HOM05D004703 ORTHO05D005801 3.7e-06 55.1 31 83.9
Zm00001eb279110 Zea mays HOM05D004703 ORTHO05D005801 4.8e-06 54.7 31 83.9
arahy.Tifrunner.gnm1.ann1.0PA3BU Arachis hypogaea HOM05D004703 ORTHO05D005801 6.2e-06 54.3 32 78.1
arahy.Tifrunner.gnm1.ann1.4J0L4L Arachis hypogaea HOM05D004703 ORTHO05D005801 6.2e-06 54.3 32 78.1
arahy.Tifrunner.gnm1.ann1.0W2QGA Arachis hypogaea HOM05D004703 ORTHO05D005801 8.2e-06 53.9 32 78.1
arahy.Tifrunner.gnm1.ann1.DGE7ZD Arachis hypogaea HOM05D004703 ORTHO05D005801 8.2e-06 53.9 32 78.1
arahy.Tifrunner.gnm1.ann1.J3Q2MP Arachis hypogaea HOM05D004703 ORTHO05D005801 8.2e-06 53.9 32 78.1


User provided reference genes

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