Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0004043 Camellia sinensis var. sinensis HOM05D007008 ORTHO05D008622 6.9e-44 180.6 119 100.0
Duzib168G0569 Durio zibethinus HOM05D007008 ORTHO05D008622 4.9e-34 147.9 74 97.3
Manes.03G007600 Manihot esculenta HOM05D007008 ORTHO05D008622 6.5e-34 147.5 74 97.3
QL02p018585 Quercus lobata HOM05D007008 ORTHO05D008622 6.5e-34 147.5 74 97.3
CiPaw.08G005100 Carya illinoinensis HOM05D007008 ORTHO05D008622 1.1e-33 146.7 74 97.3
Duzib187G1435 Durio zibethinus HOM05D007008 ORTHO05D008622 1.9e-33 146.0 74 94.6
Thecc.09G014400 Theobroma cacao HOM05D007008 ORTHO05D008622 1.9e-33 146.0 74 94.6
Manes.16G130900 Manihot esculenta HOM05D007008 ORTHO05D008622 2.5e-33 145.6 74 94.6
CANSAT25G2981 Cannabis sativa HOM05D007008 ORTHO05D008622 5.5e-33 144.4 74 93.2
Rhsim02G0211800 Rhododendron simsii HOM05D007008 ORTHO05D008622 7.1e-33 144.1 74 93.2
MSTRG.13965 Avicennia marina HOM05D007008 ORTHO05D008622 9.3e-33 143.7 74 93.2
Duzib150G0558 Durio zibethinus HOM05D007008 ORTHO05D008622 9.3e-33 143.7 74 93.2
Gohir.A07G033600 Gossypium hirsutum HOM05D007008 ORTHO05D008622 1.2e-32 143.3 74 94.6
Gohir.D07G037200 Gossypium hirsutum HOM05D007008 ORTHO05D008622 1.2e-32 143.3 74 94.6
Gorai.001G038800 Gossypium raimondii HOM05D007008 ORTHO05D008622 1.2e-32 143.3 74 94.6
MELO3C030305.2 Cucumis melo HOM05D007008 ORTHO05D008622 2.1e-32 142.5 74 91.9
FvH4_2g41220 Fragaria vesca HOM05D007008 ORTHO05D008622 2.1e-32 142.5 74 93.2
Gorai.010G119400 Gossypium raimondii HOM05D007008 ORTHO05D008622 2.7e-32 142.1 75 89.3
Prupe.1G395400 Prunus persica HOM05D007008 ORTHO05D008622 2.7e-32 142.1 74 91.9
Sed0015687 Sechium edule HOM05D007008 ORTHO05D008622 2.7e-32 142.1 73 93.2
Ciclev10009999m.g Citrus clementina HOM05D007008 ORTHO05D008622 3.5e-32 141.7 74 93.2
Gohir.D06G104200 Gossypium hirsutum HOM05D007008 ORTHO05D008622 3.5e-32 141.7 74 90.5
Nn2g14020 Nelumbo nucifera HOM05D007008 ORTHO05D008622 3.5e-32 141.7 74 91.9
CAN.G906.10 Capsicum annuum HOM05D007008 ORTHO05D008622 4.6e-32 141.4 73 93.2
FAN15G2831 Fragaria x ananassa HOM05D000756 ORTHO05D008622 6.0e-32 141.0 74 91.9
FAN27G1693 Fragaria x ananassa HOM05D007008 ORTHO05D008622 6.0e-32 141.0 74 91.9
Gohir.A06G102300 Gossypium hirsutum HOM05D007008 ORTHO05D008622 1.0e-31 140.2 74 89.2
Solyc08g006700.3 Solanum lycopersicum HOM05D007008 ORTHO05D008622 1.0e-31 140.2 74 90.5
PGSC0003DMG400026283 Solanum tuberosum HOM05D007008 ORTHO05D008622 1.0e-31 140.2 74 90.5
Nn8g40044 Nelumbo nucifera HOM05D007008 ORTHO05D008622 1.3e-31 139.8 74 90.5
Potri.018G017300 Populus trichocarpa HOM05D007008 ORTHO05D008622 1.3e-31 139.8 74 90.5
RcHm_v2.0_Chr6g0299291 Rosa chinensis HOM05D007008 ORTHO05D008622 1.3e-31 139.8 74 90.5
Migut.A00362 Erythranthe guttata HOM05D007008 ORTHO05D008622 1.8e-31 139.4 74 89.2
Glyma.14G101000 Glycine max HOM05D007008 ORTHO05D008622 2.3e-31 139.0 74 89.2
Phvul.001G040900 Phaseolus vulgaris HOM05D007008 ORTHO05D008622 2.3e-31 139.0 74 89.2
Aqoxy7G03348 Aquilegia oxysepala HOM05D007008 ORTHO05D008622 3.0e-31 138.7 73 89.0
COL.COLO4_18962 Corchorus olitorius HOM05D002170 ORTHO05D005003 3.0e-31 138.7 72 90.3
Sed0013935 Sechium edule HOM05D007008 ORTHO05D008622 3.0e-31 138.7 73 89.0
THA.LOC104799029 Tarenaya hassleriana HOM05D007008 ORTHO05D008622 3.0e-31 138.7 72 91.7
MD08G1054800 Malus domestica HOM05D007008 ORTHO05D008622 3.9e-31 138.3 74 89.2
MD15G1042200 Malus domestica HOM05D007008 ORTHO05D008622 3.9e-31 138.3 74 89.2
Eucgr.C04041 Eucalyptus grandis HOM05D007008 ORTHO05D008622 5.1e-31 137.9 74 87.8
Glyma.17G224100 Glycine max HOM05D007008 ORTHO05D008622 6.7e-31 137.5 74 87.8
Potri.006G265600 Populus trichocarpa HOM05D007008 ORTHO05D008622 6.7e-31 137.5 74 89.2
TWI34G0293 Tripterygium wilfordii HOM05D007008 ORTHO05D008622 6.7e-31 137.5 74 89.2
Oeu048545.1 Olea europaea HOM05D007008 ORTHO05D008622 8.7e-31 137.1 73 87.7
Rhsim02G0210500 Rhododendron simsii HOM05D007008 ORTHO05D008622 1.1e-30 136.7 83 83.1
Lsat_1_v5_gn_5_62001 Lactuca sativa HOM05D007008 ORTHO05D008622 1.5e-30 136.3 74 87.8
Sabra06G0208200 Salix brachista HOM05D007008 ORTHO05D008622 1.5e-30 136.3 74 87.8
TAR626G0196 Trochodendron aralioides HOM05D007008 ORTHO05D008622 2.5e-30 135.6 73 87.7
Atru.chr7.2552 Acer truncatum HOM05D007008 ORTHO05D008622 3.3e-30 135.2 74 86.5
CDE05G1515 Ceratophyllum demersum HOM05D007008 ORTHO05D008622 3.3e-30 135.2 72 87.5
arahy.Tifrunner.gnm1.ann1.ENRJ0V Arachis hypogaea HOM05D007008 ORTHO05D008622 4.3e-30 134.8 73 86.3
MSTRG.11785 Avicennia marina HOM05D007008 ORTHO05D008622 4.3e-30 134.8 74 86.5
HanXRQChr03g0081451 Helianthus annuus HOM05D007008 ORTHO05D008622 4.3e-30 134.8 73 87.7
HanXRQChr17g0538991 Helianthus annuus HOM05D007008 ORTHO05D008622 4.3e-30 134.8 74 85.1
SGA_v2.0_scaffold169G38605 Striga asiatica HOM05D007008 ORTHO05D008622 4.3e-30 134.8 73 86.3
TWI32G0141 Tripterygium wilfordii HOM05D007008 ORTHO05D008622 4.3e-30 134.8 74 86.5
SGA_v2.0_scaffold4G02166 Striga asiatica HOM05D007008 ORTHO05D008622 5.7e-30 134.4 74 86.5
THA.LOC104824959 Tarenaya hassleriana HOM05D007008 ORTHO05D008622 5.7e-30 134.4 72 87.5
AUR62024793 Chenopodium quinoa HOM05D007008 ORTHO05D008622 7.4e-30 134.0 72 86.1
Oeu006861.2 Olea europaea HOM05D007008 ORTHO05D008622 7.4e-30 134.0 73 84.9
Sabra18G0020700 Salix brachista HOM05D007008 ORTHO05D008622 7.4e-30 134.0 78 85.9
PGR044G1005 Punica granatum HOM05D007008 ORTHO05D008622 1.6e-29 132.9 73 84.9
AT5G10810 Arabidopsis thaliana HOM05D007008 ORTHO05D008622 2.8e-29 132.1 73 83.6
Lalb_Chr22g0361631 Lupinus albus HOM05D007008 ORTHO05D008622 2.8e-29 132.1 72 84.7
TAR383G0422 Trochodendron aralioides HOM05D007008 ORTHO05D008622 2.8e-29 132.1 74 82.4
HPP92_017465 Vanilla planifolia HOM05D007008 ORTHO05D008622 2.8e-29 132.1 74 82.4
Lj5g0019856 Lotus japonicus HOM05D007008 ORTHO05D008622 3.7e-29 131.7 72 86.1
AL6G21390 Arabidopsis lyrata HOM05D007008 ORTHO05D008622 4.8e-29 131.3 73 82.2
EL10Ac2g02486 Beta vulgaris HOM05D007008 ORTHO05D008622 4.8e-29 131.3 74 82.4
AUR62032427 Chenopodium quinoa HOM05D007008 ORTHO05D008622 4.8e-29 131.3 71 85.9
ECA240G3080 Erigeron canadensis HOM05D007008 ORTHO05D008622 6.2e-29 131.0 72 86.1
Thhalv10016011m.g Eutrema salsugineum HOM05D007008 ORTHO05D008622 6.2e-29 131.0 72 83.3
arahy.Tifrunner.gnm1.ann1.K1H867 Arachis hypogaea HOM05D007008 ORTHO05D008622 8.2e-29 130.6 74 81.1
Glyma.06G060700 Glycine max HOM05D007008 ORTHO05D008622 8.2e-29 130.6 74 83.8
CARHR202480 Cardamine hirsuta HOM05D007008 ORTHO05D008622 1.4e-28 129.8 72 81.9
PSO170G4073 Papaver somniferum HOM05D007008 ORTHO05D008622 1.4e-28 129.8 72 86.1
PSO357G0206 Papaver somniferum HOM05D007008 ORTHO05D008622 1.4e-28 129.8 72 86.1
Sp6g32640 Schrenkiella parvula HOM05D000653 ORTHO05D002177 1.4e-28 129.8 71 84.5
Hund25613 Selenicereus undatus HOM05D007008 ORTHO05D008622 1.4e-28 129.8 76 81.6
Carub.0006s0932 Capsella rubella HOM05D007008 ORTHO05D008622 1.8e-28 129.4 72 80.6
Eucgr.L00629 Eucalyptus grandis HOM05D007008 ORTHO05D008622 1.8e-28 129.4 85 76.5
A02p00680 Brassica napus HOM05D000653 ORTHO05D002177 2.4e-28 129.0 71 83.1
C02p04680 Brassica napus HOM05D000653 ORTHO05D002177 2.4e-28 129.0 71 83.1
BolC2t06426H Brassica oleracea HOM05D000238 ORTHO05D001043 2.4e-28 129.0 71 83.1
BolC9t59417H Brassica oleracea HOM05D000238 ORTHO05D001043 2.4e-28 129.0 71 83.1
BraA02t05052Z Brassica rapa HOM05D000238 ORTHO05D001043 2.4e-28 129.0 71 83.1
Glyma.04G060200 Glycine max HOM05D007008 ORTHO05D008622 2.4e-28 129.0 74 82.4
Medtr1g014230 Medicago truncatula HOM05D007008 ORTHO05D008622 2.4e-28 129.0 72 84.7
Aa31LG3G16290 Aethionema arabicum HOM05D007008 ORTHO05D008622 3.1e-28 128.6 72 80.6
Psat6g026400 Pisum sativum HOM05D007008 ORTHO05D008622 3.1e-28 128.6 74 79.7
Hund02976 Selenicereus undatus HOM05D007008 ORTHO05D008622 3.1e-28 128.6 72 83.3
Ah.12g060690 Amaranthus hybridus HOM05D007008 ORTHO05D008622 4.1e-28 128.3 71 85.9
TPR.G38860 Trifolium pratense HOM05D007008 ORTHO05D008622 4.1e-28 128.3 72 80.6
BraA10t44733Z Brassica rapa HOM05D000238 ORTHO05D002998 6.9e-28 127.5 71 81.7
C09p65940 Brassica napus HOM05D007008 ORTHO05D008622 1.2e-27 126.7 71 80.3
BcaB08g37301 Brassica carinata HOM05D000238 ORTHO05D008622 1.5e-27 126.3 71 80.3
BcaC03g13334 Brassica carinata HOM05D000653 ORTHO05D002177 2.0e-27 125.9 71 81.7
GSVIVG01035984001 Vitis vinifera HOM05D007008 ORTHO05D008622 2.6e-27 125.6 65 92.3
Zm00001eb078360 Zea mays HOM05D007008 ORTHO05D008622 3.4e-27 125.2 74 74.3
BcaNung06639 Brassica carinata HOM05D000653 ORTHO05D008622 4.5e-27 124.8 71 78.9
Sopen08g002640 Solanum pennellii HOM05D007008 ORTHO05D008622 4.5e-27 124.8 65 92.3
Zm00001eb184500 Zea mays HOM05D007008 ORTHO05D008622 5.8e-27 124.4 74 77.0
Cc11_g00350 Coffea canephora HOM05D007008 ORTHO05D008622 5.0e-26 121.3 65 89.2
Mapoly0112s0015 Marchantia polymorpha HOM05D007008 ORTHO05D008622 3.2e-25 118.6 74 73.0
SMO367G1120 Selaginella moellendorffii HOM05D007008 ORTHO05D008622 1.8e-23 112.8 73 67.1
Pp3c9_4080 Physcomitrium patens HOM05D007008 ORTHO05D008622 5.1e-23 111.3 74 66.2
AagrBONN_evm.TU.Sc2ySwM_344.3123 Anthoceros agrestis HOM05D007008 ORTHO05D008622 1.9e-22 109.4 73 71.2
Pp3c15_19100 Physcomitrium patens HOM05D007008 ORTHO05D008622 5.7e-22 107.8 74 63.5
Thecc.02G190100 Theobroma cacao HOM05D007008 ORTHO05D008622 7.4e-22 107.5 103 57.3
Thecc.02G024500 Theobroma cacao HOM05D007008 ORTHO05D008622 2.2e-21 105.9 64 81.2
MCO13G493 Micromonas commoda HOM05D007008 ORTHO05D008622 6.3e-21 104.4 72 58.3
Thecc.01G194900 Theobroma cacao HOM05D007008 ORTHO05D008622 4.1e-20 101.7 64 81.2
CBR_g34568 Chara braunii HOM05D007008 ORTHO05D008622 2.0e-19 99.4 64 68.8
PRCOL_00001314 Prasinoderma coloniale HOM05D007008 ORTHO05D008622 1.4e-17 93.2 72 55.6
SMO197G0113 Selaginella moellendorffii HOM05D007008 ORTHO05D008622 2.5e-17 92.4 73 52.1
CiPaw.07G231200 Carya illinoinensis HOM05D007008 ORTHO05D008622 1.2e-16 90.1 42 100.0
arahy.Tifrunner.gnm1.ann1.T6XV8N Arachis hypogaea HOM05D007008 ORTHO05D008622 3.9e-15 85.1 53 73.6
SEGI_13302 Sequoiadendron giganteum HOM05D007008 ORTHO05D008622 1.3e-13 80.1 41 87.8
Os02g0611450 Oryza sativa ssp. japonica HOM05D007008 ORTHO05D008622 2.2e-13 79.3 54 64.8
Os04g0499200 Oryza sativa ssp. japonica HOM05D007008 ORTHO05D008622 3.1e-12 75.5 49 65.3
Thecc.10G152400 Theobroma cacao HOM05D007008 ORTHO05D008622 8.5e-10 67.4 40 77.5
MBI15_g08395_MAGBIO Magnolia biondii HOM05D007008 ORTHO05D008622 7.2e-09 64.3 34 88.2
CsaV3_2G032520 Cucumis sativus L. HOM05D000653 ORTHO05D002177 1.6e-08 63.2 34 85.3
Thecc.05G179000 Theobroma cacao HOM05D000477 ORTHO05D000338 4.7e-08 61.6 41 70.7
A10p26800 Brassica napus HOM05D007008 ORTHO05D008622 1.5e-06 56.6 36 72.2
arahy.Tifrunner.gnm1.ann1.6H1017 Arachis hypogaea HOM05D007008 ORTHO05D008622 9.7e-06 53.9 31 77.4


User provided reference genes

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