Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0004035 Camellia sinensis var. sinensis HOM05D005292 ORTHO05D006473 1.6e-236 822.4 421 100.0
Dinv21573 Davidia involucrata HOM05D005292 ORTHO05D006473 5.4e-168 594.7 423 74.9
Actinidia02093 Actinidia chinensis HOM05D005292 ORTHO05D006473 1.4e-163 580.1 421 75.1
TWI15G0139 Tripterygium wilfordii HOM05D005292 ORTHO05D006473 2.6e-162 575.9 419 70.4
Thecc.03G261400 Theobroma cacao HOM05D005292 ORTHO05D006473 4.4e-162 575.1 420 71.7
GSVIVG01004916001 Vitis vinifera HOM05D005292 ORTHO05D006473 1.7e-161 573.2 384 75.3
Lj4g0005126 Lotus japonicus HOM05D005292 ORTHO05D006473 1.1e-160 570.5 420 68.1
Duzib084G0213 Durio zibethinus HOM05D005292 ORTHO05D006473 1.4e-160 570.1 420 68.6
vmacro14043 Vaccinium macrocarpon HOM05D005292 ORTHO05D006473 1.4e-160 570.1 407 72.5
Cpa.g.sc29.95 Carica papaya HOM05D005292 ORTHO05D006473 1.9e-160 569.7 409 70.9
CiPaw.11G147800 Carya illinoinensis HOM05D005292 ORTHO05D006473 1.2e-159 567.0 421 68.6
CANSAT80G2034 Cannabis sativa HOM05D005292 ORTHO05D006473 1.6e-159 566.6 419 69.0
Dinv39082 Davidia involucrata HOM05D005292 ORTHO05D006473 2.1e-159 566.2 421 70.3
QL12p014915 Quercus lobata HOM05D005292 ORTHO05D006473 2.1e-159 566.2 421 68.9
COL.COLO4_31983 Corchorus olitorius HOM05D005292 ORTHO05D006473 1.3e-158 563.5 420 69.3
Potri.001G118000 Populus trichocarpa HOM05D005292 ORTHO05D006473 1.3e-158 563.5 407 71.3
Gohir.D03G157800 Gossypium hirsutum HOM05D005292 ORTHO05D006473 1.7e-158 563.1 421 68.2
Gohir.A03G012000 Gossypium hirsutum HOM05D005292 ORTHO05D006473 3.3e-157 558.9 421 69.4
Ca_12278_v3 Cicer arietinum L. HOM05D005292 ORTHO05D006473 5.6e-157 558.1 420 68.3
arahy.Tifrunner.gnm1.ann1.VS5X7Y Arachis hypogaea HOM05D005292 ORTHO05D006473 1.2e-156 557.0 425 66.8
Cfa012803 Carpinus fangiana HOM05D005292 ORTHO05D006473 1.6e-156 556.6 419 68.3
Atru.chr9.1428 Acer truncatum HOM05D005292 ORTHO05D006473 8.1e-156 554.3 397 72.0
Oeu016513.1 Olea europaea HOM05D005292 ORTHO05D006473 8.1e-156 554.3 410 68.8
arahy.Tifrunner.gnm1.ann1.YRMJ3W Arachis hypogaea HOM05D005292 ORTHO05D006473 2.4e-155 552.7 413 68.0
Glyma.05G052500 Glycine max HOM05D005292 ORTHO05D006473 6.9e-155 551.2 420 67.4
Gorai.007G021400 Gossypium raimondii HOM05D005292 ORTHO05D006473 9.0e-155 550.8 421 68.4
Gorai.003G166300 Gossypium raimondii HOM05D005292 ORTHO05D006473 2.0e-154 549.7 421 68.4
Lj8A255T56 Lonicera japonica HOM05D005292 ORTHO05D006473 4.4e-154 548.5 301 85.4
Manes.02G033900 Manihot esculenta HOM05D005292 ORTHO05D006473 4.4e-154 548.5 407 69.0
Phvul.003G214500 Phaseolus vulgaris HOM05D005292 ORTHO05D006473 5.8e-154 548.1 420 66.2
Gohir.A11G020400 Gossypium hirsutum HOM05D005292 ORTHO05D006473 7.6e-154 547.7 420 68.6
TPR.G37684 Trifolium pratense HOM05D005292 ORTHO05D006473 1.7e-153 546.6 422 68.2
MD04G1079900 Malus domestica HOM05D005292 ORTHO05D006473 2.2e-153 546.2 431 66.1
Prupe.5G079200 Prunus persica HOM05D005292 ORTHO05D006473 6.4e-153 544.7 420 67.1
Psat4g068120 Pisum sativum HOM05D005292 ORTHO05D006473 8.4e-153 544.3 423 67.8
Medtr4g102260 Medicago truncatula HOM05D005292 ORTHO05D006473 1.4e-152 543.5 427 67.7
Glyma.17G134700 Glycine max HOM05D005292 ORTHO05D006473 3.2e-152 542.3 419 66.1
MSTRG.12063 Avicennia marina HOM05D005292 ORTHO05D006473 4.2e-152 542.0 398 69.6
Ciclev10020454m.g Citrus clementina HOM05D005292 ORTHO05D006473 4.2e-152 542.0 421 66.5
Potri.003G114900 Populus trichocarpa HOM05D005292 ORTHO05D006473 4.2e-152 542.0 303 84.2
Gohir.D12G223000 Gossypium hirsutum HOM05D005292 ORTHO05D006473 5.4e-152 541.6 422 65.6
EL10Ac5g12610 Beta vulgaris HOM05D005292 ORTHO05D006473 1.2e-151 540.4 302 83.4
Peaxi162Scf00271g00021 Petunia axillaris HOM05D005292 ORTHO05D006473 1.2e-151 540.4 399 69.4
THA.LOC104813867 Tarenaya hassleriana HOM05D005292 ORTHO05D006473 2.1e-151 539.7 298 85.2
Nitab4.5_0003534g0020 Nicotiana tabacum HOM05D005292 ORTHO05D006473 2.7e-151 539.3 399 71.2
Nn1g01261 Nelumbo nucifera HOM05D005292 ORTHO05D006473 3.5e-151 538.9 408 67.2
CiPaw.12G105300 Carya illinoinensis HOM05D005292 ORTHO05D006473 4.6e-151 538.5 369 74.0
VMungo1215G1740 Vigna mungo HOM05D005292 ORTHO05D006473 4.6e-151 538.5 419 66.3
Gohir.D11G020100 Gossypium hirsutum HOM05D005292 ORTHO05D006473 1.0e-150 537.3 420 67.4
Lalb_Chr05g0225431 Lupinus albus HOM05D005292 ORTHO05D006473 1.3e-150 537.0 420 66.4
Cc08_g13210 Coffea canephora HOM05D005292 ORTHO05D006473 2.3e-150 536.2 376 75.5
Eucgr.D01991 Eucalyptus grandis HOM05D005292 ORTHO05D006473 2.3e-150 536.2 298 84.6
Sed0004099 Sechium edule HOM05D005292 ORTHO05D006473 3.9e-150 535.4 357 73.7
Aqoxy7G00654 Aquilegia oxysepala HOM05D005292 ORTHO05D006473 5.1e-150 535.0 300 85.3
CsaV3_5G003780 Cucumis sativus L. HOM05D005292 ORTHO05D006473 5.1e-150 535.0 401 71.6
PGR031G2306 Punica granatum HOM05D005292 ORTHO05D006473 8.7e-150 534.3 285 86.3
Sopen08g027820 Solanum pennellii HOM05D005292 ORTHO05D006473 8.7e-150 534.3 365 72.3
PGSC0003DMG400003959 Solanum tuberosum HOM05D005292 ORTHO05D006473 1.5e-149 533.5 399 70.4
Gorai.008G239300 Gossypium raimondii HOM05D005292 ORTHO05D006473 2.5e-149 532.7 447 62.4
Solyc08g079450.3 Solanum lycopersicum HOM05D005292 ORTHO05D006473 5.6e-149 531.6 365 72.1
AUR62010507 Chenopodium quinoa HOM05D005292 ORTHO05D006473 9.6e-149 530.8 302 81.1
Hma1.2p1_0367F.1_g137040 Hydrangea macrophylla HOM05D005292 ORTHO05D006473 1.3e-148 530.4 330 78.2
AL6G47090 Arabidopsis lyrata HOM05D005292 ORTHO05D006473 2.1e-148 529.6 297 83.5
CAN.G630.87 Capsicum annuum HOM05D005292 ORTHO05D006473 2.8e-148 529.3 399 68.7
SGA_v2.0_scaffold120G32820 Striga asiatica HOM05D005292 ORTHO05D006473 2.8e-148 529.3 439 64.5
PSO782G2032 Papaver somniferum HOM05D005292 ORTHO05D006473 3.6e-148 528.9 299 83.9
Migut.A00832 Erythranthe guttata HOM05D005292 ORTHO05D006473 4.8e-148 528.5 289 85.5
Thhalv10028717m.g Eutrema salsugineum HOM05D005292 ORTHO05D006473 1.1e-147 527.3 296 83.4
Sc22g0000600 Simmondsia chinensis HOM05D005292 ORTHO05D006473 1.4e-147 526.9 289 83.4
Nitab4.5_0007591g0040 Nicotiana tabacum HOM05D005292 ORTHO05D006473 1.8e-147 526.6 288 85.4
Carub.0006s3135 Capsella rubella HOM05D005292 ORTHO05D006473 2.4e-147 526.2 303 80.9
RcHm_v2.0_Chr7g0201621 Rosa chinensis HOM05D005292 ORTHO05D006473 3.1e-147 525.8 421 69.4
TAR636G1323 Trochodendron aralioides HOM05D005292 ORTHO05D006473 3.1e-147 525.8 357 74.8
FAN08G1347 Fragaria x ananassa HOM05D005292 ORTHO05D006473 4.0e-147 525.4 421 67.5
HanXRQChr02g0046251 Helianthus annuus HOM05D005292 ORTHO05D006473 5.3e-147 525.0 312 80.4
AT4G12230 Arabidopsis thaliana HOM05D005292 ORTHO05D006473 6.9e-147 524.6 297 82.5
PSO478G4449 Papaver somniferum HOM05D005292 ORTHO05D006473 6.9e-147 524.6 290 84.8
BcaB01g02654 Brassica carinata HOM05D005292 ORTHO05D006473 1.2e-146 523.9 287 84.7
FAN04G0899 Fragaria x ananassa HOM05D005292 ORTHO05D006473 1.5e-146 523.5 421 68.2
FAN18G3339 Fragaria x ananassa HOM05D005292 ORTHO05D006473 1.5e-146 523.5 421 68.4
CARHR254020 Cardamine hirsuta HOM05D005292 ORTHO05D006473 2.0e-146 523.1 295 82.7
Hund14648 Selenicereus undatus HOM05D005292 ORTHO05D006473 3.4e-146 522.3 301 82.1
FAN13G3324 Fragaria x ananassa HOM05D005292 ORTHO05D006473 4.5e-146 521.9 421 68.4
BcaC01g04601 Brassica carinata HOM05D005292 ORTHO05D006473 5.8e-146 521.5 287 84.3
DCAR_006803 Daucus carota HOM05D005292 ORTHO05D006473 5.8e-146 521.5 296 83.8
ECA233G3282 Erigeron canadensis HOM05D005292 ORTHO05D006473 9.9e-146 520.8 396 69.9
SalBow1G6483 Salvia bowleyana HOM05D005292 ORTHO05D006473 2.9e-145 519.2 321 78.5
Sp6g05330 Schrenkiella parvula HOM05D005292 ORTHO05D006473 2.9e-145 519.2 297 81.8
A03p29600 Brassica napus HOM05D005292 ORTHO05D006473 8.4e-145 517.7 287 84.3
BraA03t12155Z Brassica rapa HOM05D005292 ORTHO05D006473 1.1e-144 517.3 287 84.3
C03p35880 Brassica napus HOM05D005292 ORTHO05D006473 1.4e-144 516.9 288 84.0
BolC3t15896H Brassica oleracea HOM05D005292 ORTHO05D006473 1.4e-144 516.9 288 84.0
MBI12_g31646_MAGBIO Magnolia biondii HOM05D005292 ORTHO05D006473 5.4e-144 515.0 404 68.8
HanXRQChr07g0188671 Helianthus annuus HOM05D005292 ORTHO05D006473 6.0e-143 511.5 340 74.4
Aa31LG9G10310 Aethionema arabicum HOM05D005292 ORTHO05D006473 1.0e-142 510.8 385 69.9
CDE09G1063 Ceratophyllum demersum HOM05D005292 ORTHO05D006473 1.0e-142 510.8 300 78.7
Ah.12g058260 Amaranthus hybridus HOM05D005292 ORTHO05D006473 2.3e-142 509.6 321 75.4
Sabra01G0090700 Salix brachista HOM05D005292 ORTHO05D006473 2.8e-140 502.7 503 57.7
Gohir.A12G220700 Gossypium hirsutum HOM05D005292 ORTHO05D006473 4.8e-140 501.9 312 77.9
Os10g0169800 Oryza sativa ssp. japonica HOM05D005292 ORTHO05D006473 3.4e-138 495.7 371 66.3
Ah.02g116220 Amaranthus hybridus HOM05D005292 ORTHO05D006473 4.9e-137 491.9 266 84.2
ClCG01G003660 Citrullus lanatus HOM05D005292 ORTHO05D006473 1.1e-136 490.7 377 68.4
Rhsim07G0101700 Rhododendron simsii HOM05D005292 ORTHO05D006473 1.2e-135 487.3 455 60.7
Zm00001eb026990 Zea mays HOM05D005292 ORTHO05D006473 2.7e-135 486.1 304 75.7
TWI15G0397 Tripterygium wilfordii HOM05D005292 ORTHO05D006473 6.0e-135 485.0 415 63.9
AUR62017394 Chenopodium quinoa HOM05D005292 ORTHO05D006473 7.9e-135 484.6 278 80.2
Lsat_1_v5_gn_6_9841 Lactuca sativa HOM05D005292 ORTHO05D006473 8.2e-132 474.6 322 72.7
unitig_744.g24320 Utricularia gibba HOM05D005292 ORTHO05D006473 5.3e-131 471.9 322 69.6
ATR0757G031 Amborella trichopoda HOM05D005292 ORTHO05D006473 3.4e-130 469.2 281 79.0
CDE11G0205 Ceratophyllum demersum HOM05D005292 ORTHO05D006473 2.5e-128 463.0 280 77.1
Nn4g26373 Nelumbo nucifera HOM05D005292 ORTHO05D006473 3.2e-128 462.6 384 61.7
Haze_08610 Corylus avellana HOM05D005292 ORTHO05D006473 9.3e-128 461.1 417 60.9
HPP92_014608 Vanilla planifolia HOM05D005292 ORTHO05D006473 2.4e-123 446.4 387 60.5
SEGI_16146 Sequoiadendron giganteum HOM05D005292 ORTHO05D006473 6.9e-115 418.3 298 65.8
Pp3c6_20320 Physcomitrium patens HOM05D005292 ORTHO05D006473 1.7e-113 413.7 279 68.1
Sabra03G0079600 Salix brachista HOM05D005292 ORTHO05D006473 9.4e-112 407.9 219 87.2
Mapoly0066s0051 Marchantia polymorpha HOM05D005292 ORTHO05D006473 1.5e-109 400.6 270 68.1
SMO223G0031 Selaginella moellendorffii HOM05D005292 ORTHO05D006473 2.0e-109 400.2 274 66.8
AagrBONN_evm.TU.Sc2ySwM_368.248 Anthoceros agrestis HOM05D005292 ORTHO05D006473 4.8e-108 395.6 303 62.7
FvH4_5g00640 Fragaria vesca HOM05D005292 ORTHO05D006473 1.4e-107 394.0 357 63.9
Actinidia14462 Actinidia chinensis HOM05D005292 ORTHO05D006473 6.9e-107 391.7 413 58.1
Duzib205G1434 Durio zibethinus HOM05D005292 ORTHO05D006473 1.4e-102 377.5 420 52.4
TAR629G1108 Trochodendron aralioides HOM05D005292 ORTHO05D006473 4.5e-98 362.5 183 89.6
Oeu022319.3 Olea europaea HOM05D005292 ORTHO05D006473 1.8e-94 350.5 420 50.5
Dinv37766 Davidia involucrata HOM05D005292 ORTHO05D006473 2.0e-82 310.5 282 66.3
Aa31LG11G5120 Aethionema arabicum HOM05D005292 ORTHO05D006473 2.2e-76 290.4 147 88.4
MD06G1074900 Malus domestica HOM05D005292 ORTHO05D006473 5.9e-74 282.3 147 85.0
Lsat_1_v5_gn_8_156781 Lactuca sativa HOM05D005292 ORTHO05D006473 8.1e-47 192.2 173 59.0
MELO3C005579.2 Cucumis melo HOM05D005292 ORTHO05D006473 1.9e-43 181.0 178 65.2
Lsat_1_v5_gn_8_88300 Lactuca sativa HOM05D005292 ORTHO05D006473 7.1e-43 179.1 185 51.4
Lsat_1_v5_gn_2_99060 Lactuca sativa HOM05D005292 ORTHO05D006473 6.0e-42 176.0 120 72.5
SEGI_25328 Sequoiadendron giganteum HOM05D005292 ORTHO05D006473 9.9e-37 158.7 94 70.2
Lsat_1_v5_gn_8_99640 Lactuca sativa HOM05D005292 ORTHO05D006473 1.6e-34 151.4 161 50.9
Cc08_g13200 Coffea canephora HOM05D005292 ORTHO05D006473 4.0e-30 136.7 66 92.4
SEGI_08273 Sequoiadendron giganteum HOM05D005292 ORTHO05D006473 5.8e-29 132.9 84 73.8
TAR636G3691 Trochodendron aralioides HOM05D005292 ORTHO05D006473 9.9e-29 132.1 140 56.4
CDE11G1060 Ceratophyllum demersum HOM05D005292 ORTHO05D006473 1.4e-27 128.3 66 83.3
Glyma.05G052200 Glycine max HOM05D005292 ORTHO05D006473 5.6e-24 116.3 96 61.5
MD06G1074800 Malus domestica HOM05D005292 ORTHO05D006473 8.1e-23 112.5 72 76.4
SEGI_15988 Sequoiadendron giganteum HOM05D005292 ORTHO05D006473 1.1e-22 112.1 65 76.9
TWI81G0363 Tripterygium wilfordii HOM05D005292 ORTHO05D006473 2.0e-21 107.8 71 73.2
Eucgr.C02046 Eucalyptus grandis HOM05D005292 ORTHO05D006473 2.3e-17 94.4 66 71.2
vmacro17465 Vaccinium macrocarpon HOM05D002883 ORTHO05D003116 1.6e-15 88.2 66 63.6
Peaxi162Scf00102g01237 Petunia axillaris HOM05D000023 ORTHO05D013611 1.8e-06 58.2 48 54.2


User provided reference genes

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