Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0004026 Camellia sinensis var. sinensis HOM05D007502 ORTHO05D010230 1.5e-75 286.2 150 100.0
CSS0024819 Camellia sinensis var. sinensis HOM05D007502 ORTHO05D010230 1.3e-63 246.5 134 94.8
vmacro05426 Vaccinium macrocarpon HOM05D007502 ORTHO05D010230 4.8e-34 148.3 137 60.6
RhsimUnG0241800 Rhododendron simsii HOM05D007502 ORTHO05D010230 4.3e-27 125.2 109 62.4
Actinidia11971 Actinidia chinensis HOM05D007502 ORTHO05D010230 1.1e-22 110.5 136 56.6
MD15G1299000 Malus domestica HOM05D007502 ORTHO05D010230 1.5e-19 100.1 152 47.4
Prupe.6G218900 Prunus persica HOM05D007502 ORTHO05D010230 2.5e-19 99.4 147 46.3
Lsat_1_v5_gn_2_82580 Lactuca sativa HOM05D007502 ORTHO05D010230 1.3e-18 97.1 140 43.6
CiPaw.01G003100 Carya illinoinensis HOM05D007502 ORTHO05D010230 6.3e-18 94.7 134 48.5
Dinv26948 Davidia involucrata HOM05D001896 ORTHO05D001862 8.2e-18 94.4 90 64.4
Cfa004764 Carpinus fangiana HOM05D007502 ORTHO05D010230 4.1e-17 92.0 143 47.6
Cc07_g07260 Coffea canephora HOM05D007502 ORTHO05D010230 4.1e-17 92.0 141 46.1
Ciclev10027603m.g Citrus clementina HOM05D007502 ORTHO05D010230 4.5e-16 88.6 141 45.4
Actinidia36426 Actinidia chinensis HOM05D001896 ORTHO05D001862 7.6e-16 87.8 90 61.1
PGSC0003DMG401021412 Solanum tuberosum HOM05D007502 ORTHO05D010230 1.3e-15 87.0 128 43.8
Solyc02g092200.3 Solanum lycopersicum HOM05D007502 ORTHO05D010230 3.8e-15 85.5 133 50.4
Nitab4.5_0000142g0280 Nicotiana tabacum HOM05D007502 ORTHO05D010230 6.5e-15 84.7 121 49.6
QL06p039372 Quercus lobata HOM05D007502 ORTHO05D010230 6.5e-15 84.7 145 41.4
Haze_10361 Corylus avellana HOM05D007502 ORTHO05D010230 2.5e-14 82.8 143 46.9
Sopen02g036770 Solanum pennellii HOM05D007502 ORTHO05D010230 7.2e-14 81.3 136 47.8
GSVIVG01002329001 Vitis vinifera HOM05D007502 ORTHO05D010230 7.2e-14 81.3 143 44.1
Peaxi162Scf00548g00223 Petunia axillaris HOM05D007502 ORTHO05D010230 1.2e-13 80.5 100 49.0
TAR628G1349 Trochodendron aralioides HOM05D007502 ORTHO05D010230 1.2e-13 80.5 134 46.3
DCAR_025816 Daucus carota HOM05D007502 ORTHO05D010230 2.7e-13 79.3 126 45.2
Lsat_1_v5_gn_5_174300 Lactuca sativa HOM05D007502 ORTHO05D010230 2.7e-13 79.3 110 45.5
Thecc.01G074400 Theobroma cacao HOM05D007502 ORTHO05D010230 3.6e-13 79.0 140 45.7
Potri.007G006000 Populus trichocarpa HOM05D007502 ORTHO05D010230 6.1e-13 78.2 150 41.3
Cpa.g.c26343.2 Carica papaya HOM05D007502 ORTHO05D010230 7.9e-13 77.8 129 42.6
RcHm_v2.0_Chr2g0108411 Rosa chinensis HOM05D007502 ORTHO05D010230 1.8e-12 76.6 142 40.8
Eucgr.I00691 Eucalyptus grandis HOM05D007502 ORTHO05D010230 6.7e-12 74.7 150 40.0
ECA238G4396 Erigeron canadensis HOM05D007502 ORTHO05D010230 8.8e-12 74.3 147 40.8
COL.COLO4_11595 Corchorus olitorius HOM05D007502 ORTHO05D010230 1.1e-11 73.9 143 35.7
Gorai.007G225000 Gossypium raimondii HOM05D007502 ORTHO05D010230 7.4e-11 71.2 141 43.3
Gohir.A11G213400 Gossypium hirsutum HOM05D007502 ORTHO05D010230 9.7e-11 70.9 144 41.7
Sabra07G0004300 Salix brachista HOM05D007502 ORTHO05D010230 2.2e-10 69.7 106 44.3
CDE06G1988 Ceratophyllum demersum HOM05D007502 ORTHO05D010230 2.8e-10 69.3 104 38.5
HanXRQChr01g0002171 Helianthus annuus HOM05D007502 ORTHO05D010230 2.8e-10 69.3 132 38.6
Duzib187G0517 Durio zibethinus HOM05D007502 ORTHO05D010230 4.8e-10 68.6 139 41.7
Gohir.D11G209800 Gossypium hirsutum HOM05D007502 ORTHO05D010230 4.8e-10 68.6 142 45.1
Lsat_1_v5_gn_4_132041 Lactuca sativa HOM05D007502 ORTHO05D010230 6.3e-10 68.2 80 52.5
Lalb_Chr05g0213781 Lupinus albus HOM05D007502 ORTHO05D010230 8.2e-10 67.8 127 38.6
Nitab4.5_0003129g0050 Nicotiana tabacum HOM05D007502 ORTHO05D010230 1.1e-09 67.4 75 60.0
BraA06t26210Z Brassica rapa HOM05D007502 ORTHO05D011692 1.8e-09 66.6 140 37.9
Psat2g171920 Pisum sativum HOM05D007502 ORTHO05D010230 1.8e-09 66.6 126 39.7
CANSAT01G3167 Cannabis sativa HOM05D007502 ORTHO05D010230 4.1e-09 65.5 134 38.1
Glyma.01G195100 Glycine max HOM05D007502 ORTHO05D010230 9.1e-09 64.3 111 40.5
arahy.Tifrunner.gnm1.ann1.69I0H7 Arachis hypogaea HOM05D007502 ORTHO05D010230 1.5e-08 63.5 137 34.3
C03p59700 Brassica napus HOM05D007502 ORTHO05D011692 2.0e-08 63.2 152 38.2
BolC3t18232H Brassica oleracea HOM05D007502 ORTHO05D011692 2.0e-08 63.2 152 38.2
Medtr5g015230 Medicago truncatula HOM05D007502 ORTHO05D010230 2.0e-08 63.2 127 38.6
A06p32780 Brassica napus HOM05D007502 ORTHO05D011692 2.6e-08 62.8 143 39.2
Thhalv10005075m.g Eutrema salsugineum HOM05D007502 ORTHO05D010230 2.6e-08 62.8 106 41.5
Phvul.002G009800 Phaseolus vulgaris HOM05D007502 ORTHO05D010230 4.5e-08 62.0 105 38.1
MSTRG.3478 Avicennia marina HOM05D007502 ORTHO05D010230 1.0e-07 60.8 124 40.3
BcaB02g09909 Brassica carinata HOM05D007502 ORTHO05D010230 1.0e-07 60.8 156 35.3
Glyma.11G046600 Glycine max HOM05D007502 ORTHO05D010230 1.0e-07 60.8 131 36.6
VMungo1215G1334 Vigna mungo HOM05D007502 ORTHO05D010230 2.2e-07 59.7 127 35.4
arahy.Tifrunner.gnm1.ann1.W7GVX2 Arachis hypogaea HOM05D007502 ORTHO05D010230 2.9e-07 59.3 137 35.0
AT5G67640 Arabidopsis thaliana HOM05D007502 ORTHO05D010230 6.5e-07 58.2 146 38.4
Dinv23033 Davidia involucrata HOM05D001896 ORTHO05D001862 1.1e-06 57.4 106 45.3
CARHR279950 Cardamine hirsuta HOM05D007502 ORTHO05D010230 1.4e-06 57.0 152 32.9
SalBow5G4540 Salvia bowleyana HOM05D007502 ORTHO05D010230 2.5e-06 56.2 61 59.0
Sc03g0002470 Simmondsia chinensis HOM05D007502 ORTHO05D010230 2.5e-06 56.2 85 44.7
Haze_15266 Corylus avellana HOM05D064528 ORTHO05D043735 3.2e-06 55.8 106 42.5
ATR0739G061 Amborella trichopoda HOM05D007502 ORTHO05D010230 7.2e-06 54.7 94 42.6


User provided reference genes

Program Settings