Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0004020 Camellia sinensis var. sinensis HOM05D001723 ORTHO05D001706 3.4e-22 107.5 55 100.0
CSS0002151 Camellia sinensis var. sinensis HOM05D001723 ORTHO05D001706 5.0e-13 77.0 40 97.5
Cc04_g01800 Coffea canephora HOM05D001723 ORTHO05D001706 7.9e-11 69.7 40 82.5
CSS0000903 Camellia sinensis var. sinensis HOM05D001723 ORTHO05D001706 3.9e-10 67.4 40 77.5
CSS0012518 Camellia sinensis var. sinensis HOM05D001723 ORTHO05D001706 3.9e-10 67.4 40 77.5
Phvul.010G137700 Phaseolus vulgaris HOM05D001723 ORTHO05D001706 1.5e-09 65.5 48 68.8
Actinidia39106 Actinidia chinensis HOM05D001723 ORTHO05D001706 1.9e-09 65.1 40 75.0
Oeu026766.1 Olea europaea HOM05D001723 ORTHO05D001706 1.9e-09 65.1 40 80.0
Glyma.08G191700 Glycine max HOM05D001723 ORTHO05D001706 2.5e-09 64.7 40 75.0
Peaxi162Scf00038g01619 Petunia axillaris HOM05D001723 ORTHO05D001706 2.5e-09 64.7 40 77.5
GSVIVG01016798001 Vitis vinifera HOM05D001723 ORTHO05D001706 2.5e-09 64.7 40 77.5
Cfa003568 Carpinus fangiana HOM05D001723 ORTHO05D001706 3.3e-09 64.3 40 72.5
Hma1.2p1_1128F.1_g259790 Hydrangea macrophylla HOM05D001723 ORTHO05D001706 4.3e-09 63.9 40 75.0
Phvul.005G157500 Phaseolus vulgaris HOM05D001723 ORTHO05D001706 4.3e-09 63.9 41 73.2
Glyma.07G008700 Glycine max HOM05D001723 ORTHO05D001706 5.7e-09 63.5 48 66.7
Glyma.14G136600 Glycine max HOM05D001723 ORTHO05D001706 7.4e-09 63.2 41 70.7
Solyc03g121730.3 Solanum lycopersicum HOM05D001723 ORTHO05D001706 7.4e-09 63.2 40 70.0
Sopen03g040540 Solanum pennellii HOM05D001723 ORTHO05D001706 7.4e-09 63.2 40 70.0
arahy.Tifrunner.gnm1.ann1.B718UC Arachis hypogaea HOM05D001723 ORTHO05D001706 9.7e-09 62.8 37 75.7
arahy.Tifrunner.gnm1.ann1.U9TUQQ Arachis hypogaea HOM05D001723 ORTHO05D001706 9.7e-09 62.8 37 75.7
Haze_15978 Corylus avellana HOM05D001723 ORTHO05D001706 9.7e-09 62.8 40 70.0
Oeu027293.1 Olea europaea HOM05D001723 ORTHO05D001706 9.7e-09 62.8 37 81.1
Solyc06g062750.3 Solanum lycopersicum HOM05D001723 ORTHO05D001706 9.7e-09 62.8 40 77.5
Sopen06g022200 Solanum pennellii HOM05D001723 ORTHO05D001706 9.7e-09 62.8 40 77.5
VMungo0331G1868 Vigna mungo HOM05D001723 ORTHO05D001706 9.7e-09 62.8 40 72.5
VMungo1080G0451 Vigna mungo HOM05D001723 ORTHO05D001706 9.7e-09 62.8 40 75.0
Lj3g0019209 Lotus japonicus HOM05D001723 ORTHO05D001706 1.3e-08 62.4 40 72.5
Lalb_Chr22g0351901 Lupinus albus HOM05D001723 ORTHO05D001706 1.3e-08 62.4 40 75.0
Nitab4.5_0001295g0220 Nicotiana tabacum HOM05D001723 ORTHO05D001706 1.6e-08 62.0 40 72.5
Nitab4.5_0005918g0060 Nicotiana tabacum HOM05D001723 ORTHO05D001706 1.6e-08 62.0 37 81.1
Nitab4.5_0010251g0020 Nicotiana tabacum HOM05D001723 ORTHO05D001706 1.6e-08 62.0 40 72.5
PGSC0003DMG402004850 Solanum tuberosum HOM05D001723 ORTHO05D001706 1.6e-08 62.0 40 77.5
CAN.G862.7 Capsicum annuum HOM05D001723 ORTHO05D001706 2.2e-08 61.6 40 70.0
Dinv04019 Davidia involucrata HOM05D001723 ORTHO05D001706 2.2e-08 61.6 40 70.0
Nitab4.5_0000255g0280 Nicotiana tabacum HOM05D001723 ORTHO05D001706 2.2e-08 61.6 37 81.1
PGSC0003DMG400002580 Solanum tuberosum HOM05D001723 ORTHO05D001706 2.2e-08 61.6 40 67.5
CAN.G825.29 Capsicum annuum HOM05D001723 ORTHO05D001706 2.8e-08 61.2 40 77.5
Glyma.15G025600 Glycine max HOM05D001723 ORTHO05D001706 2.8e-08 61.2 41 70.7
CiPaw.02G139000 Carya illinoinensis HOM05D001723 ORTHO05D001706 3.7e-08 60.8 40 77.5
Lalb_Chr24g0396471 Lupinus albus HOM05D001723 ORTHO05D001706 3.7e-08 60.8 37 75.7
Oeu011883.1 Olea europaea HOM05D001723 ORTHO05D001706 3.7e-08 60.8 37 78.4
Peaxi162Scf00207g01342 Petunia axillaris HOM05D001723 ORTHO05D001706 3.7e-08 60.8 40 77.5
Hma1.2p1_0496F.1_g165920 Hydrangea macrophylla HOM05D001723 ORTHO05D001706 4.8e-08 60.5 40 72.5
Lsat_1_v5_gn_5_135061 Lactuca sativa HOM05D001723 ORTHO05D001706 6.3e-08 60.1 40 70.0
Medtr2g099720 Medicago truncatula HOM05D001723 ORTHO05D001706 6.3e-08 60.1 40 67.5
Ca_01213_v3 Cicer arietinum L. HOM05D001723 ORTHO05D001706 8.2e-08 59.7 37 73.0
Psat5g291520 Pisum sativum HOM05D001723 ORTHO05D001706 8.2e-08 59.7 37 73.0
Rhsim12G0207400 Rhododendron simsii HOM05D001723 ORTHO05D001706 8.2e-08 59.7 40 67.5
SGA_v2.0_scaffold71G23804 Striga asiatica HOM05D001723 ORTHO05D001706 8.2e-08 59.7 40 70.0
QL05p010435 Quercus lobata HOM05D001723 ORTHO05D001706 1.1e-07 59.3 40 77.5
SGA_v2.0_scaffold122G33365 Striga asiatica HOM05D001723 ORTHO05D001706 1.1e-07 59.3 40 70.0
MSTRG.10977 Avicennia marina HOM05D001723 ORTHO05D001706 1.4e-07 58.9 40 67.5
MSTRG.4772 Avicennia marina HOM05D001723 ORTHO05D001706 1.4e-07 58.9 40 70.0
Cpa.g.sc25.67 Carica papaya HOM05D001723 ORTHO05D001706 1.8e-07 58.5 40 75.0
Sabra01G0143400 Salix brachista HOM05D001723 ORTHO05D001706 1.8e-07 58.5 40 67.5
Dinv37903 Davidia involucrata HOM05D001723 ORTHO05D001706 2.4e-07 58.2 40 65.0
Potri.003G041000 Populus trichocarpa HOM05D001723 ORTHO05D001706 2.4e-07 58.2 40 67.5
Sabra03G0023400 Salix brachista HOM05D001723 ORTHO05D001706 2.4e-07 58.2 40 67.5
CiPaw.01G223600 Carya illinoinensis HOM05D001723 ORTHO05D001706 4.1e-07 57.4 40 67.5
unitig_32.g11017 Utricularia gibba HOM05D001723 ORTHO05D001706 4.1e-07 57.4 40 65.0
HanXRQChr10g0312411 Helianthus annuus HOM05D001723 ORTHO05D001706 5.3e-07 57.0 40 70.0
Manes.11G024900 Manihot esculenta HOM05D001723 ORTHO05D001706 5.3e-07 57.0 37 75.7
vmacro17034 Vaccinium macrocarpon HOM05D001723 ORTHO05D001706 5.3e-07 57.0 48 58.3
ECA234G0618 Erigeron canadensis HOM05D001723 ORTHO05D001706 6.9e-07 56.6 40 67.5
Lj9A520T87 Lonicera japonica HOM05D001723 ORTHO05D001706 6.9e-07 56.6 40 75.0
Potri.001G196800 Populus trichocarpa HOM05D001723 ORTHO05D001706 9.0e-07 56.2 40 65.0
RcHm_v2.0_Chr2g0143621 Rosa chinensis HOM05D001723 ORTHO05D001706 9.0e-07 56.2 40 72.5
SalBow6G0527 Salvia bowleyana HOM05D001723 ORTHO05D001706 9.0e-07 56.2 43 62.8
SalBow6G3938 Salvia bowleyana HOM05D001723 ORTHO05D001706 9.0e-07 56.2 43 62.8
Atru.chr1.3773 Acer truncatum HOM05D001723 ORTHO05D001706 1.2e-06 55.8 40 72.5
FvH4_6g33730 Fragaria vesca HOM05D001723 ORTHO05D001706 2.0e-06 55.1 40 72.5
FAN02G1790 Fragaria x ananassa HOM05D001723 ORTHO05D001706 2.0e-06 55.1 40 72.5
FAN05G1430 Fragaria x ananassa HOM05D001723 ORTHO05D001706 2.0e-06 55.1 40 72.5
FAN09G0096 Fragaria x ananassa HOM05D001723 ORTHO05D001706 2.0e-06 55.1 40 72.5
FAN14G4892 Fragaria x ananassa HOM05D001723 ORTHO05D001706 2.0e-06 55.1 40 72.5
Ciclev10025780m.g Citrus clementina HOM05D001723 ORTHO05D001706 2.6e-06 54.7 40 65.0
PSO832G2377 Papaver somniferum HOM05D001723 ORTHO05D001706 4.5e-06 53.9 40 67.5
PSO063G6096 Papaver somniferum HOM05D001723 ORTHO05D001706 5.9e-06 53.5 40 67.5
PGR102G3068 Punica granatum HOM05D001723 ORTHO05D001706 5.9e-06 53.5 55 58.2
Lj5A43T72 Lonicera japonica HOM05D001723 ORTHO05D001706 1.0e-05 52.8 50 60.0
Prupe.3G047500 Prunus persica HOM05D001723 ORTHO05D001706 1.0e-05 52.8 40 70.0


User provided reference genes

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