Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0004018 Camellia sinensis var. sinensis HOM05D001516 ORTHO05D001357 4.7e-76 287.7 140 100.0
CSS0038680 Camellia sinensis var. sinensis HOM05D001516 ORTHO05D001357 8.3e-57 223.8 133 83.5
Actinidia28746 Actinidia chinensis HOM05D002491 ORTHO05D002651 7.6e-42 174.1 101 81.2
Dinv08169 Davidia involucrata HOM05D001516 ORTHO05D001357 1.7e-41 172.9 107 79.4
Dinv40181 Davidia involucrata HOM05D001516 ORTHO05D001357 1.7e-41 172.9 109 78.9
Lj4A234T62 Lonicera japonica HOM05D001516 ORTHO05D001357 4.6e-31 138.3 102 66.7
Lj2A499G36 Lonicera japonica HOM05D001516 ORTHO05D001357 6.0e-31 137.9 107 68.2
vmacro18462 Vaccinium macrocarpon HOM05D001516 ORTHO05D001357 3.9e-30 135.2 116 59.5
Lsat_1_v5_gn_2_73400 Lactuca sativa HOM05D001516 ORTHO05D001357 2.1e-28 129.4 102 63.7
ECA238G4466 Erigeron canadensis HOM05D001516 ORTHO05D001357 9.9e-26 120.6 106 58.5
HanXRQChr09g0258161 Helianthus annuus HOM05D001516 ORTHO05D001357 9.9e-26 120.6 112 58.0
Cc07_g11770 Coffea canephora HOM05D001516 ORTHO05D001357 1.8e-22 109.8 114 54.4
Nitab4.5_0000702g0170 Nicotiana tabacum HOM05D001516 ORTHO05D001357 5.1e-22 108.2 106 50.0
Nitab4.5_0011694g0020 Nicotiana tabacum HOM05D001516 ORTHO05D001357 5.1e-22 108.2 106 50.0
QL06p052912 Quercus lobata HOM05D001516 ORTHO05D001357 4.3e-21 105.1 121 44.6
CiPaw.07G003300 Carya illinoinensis HOM05D001516 ORTHO05D001357 7.4e-21 104.4 107 52.3
Manes.02G113900 Manihot esculenta HOM05D001516 ORTHO05D001357 1.8e-19 99.8 103 49.5
Atru.chr4.1891 Acer truncatum HOM05D001516 ORTHO05D001357 2.4e-19 99.4 106 49.1
RcHm_v2.0_Chr2g0097321 Rosa chinensis HOM05D001516 ORTHO05D001357 2.4e-19 99.4 107 48.6
Gorai.003G002500 Gossypium raimondii HOM05D001516 ORTHO05D001357 6.9e-19 97.8 103 50.5
Cpa.g.sc6.346 Carica papaya HOM05D001516 ORTHO05D001357 2.6e-18 95.9 101 50.5
FvH4_1g10460 Fragaria vesca HOM05D001516 ORTHO05D001357 3.4e-18 95.5 107 46.7
FAN26G0778 Fragaria x ananassa HOM05D001516 ORTHO05D001357 4.5e-18 95.1 107 46.7
Gohir.D03G002200 Gossypium hirsutum HOM05D001516 ORTHO05D001357 4.5e-18 95.1 103 49.5
Prupe.7G181600 Prunus persica HOM05D001516 ORTHO05D001357 5.8e-18 94.7 101 46.5
Gohir.A02G177600 Gossypium hirsutum HOM05D001516 ORTHO05D001357 1.7e-17 93.2 103 48.5
FAN23G2806 Fragaria x ananassa HOM05D001516 ORTHO05D001357 2.2e-17 92.8 107 46.7
FAN19G0893 Fragaria x ananassa HOM05D001516 ORTHO05D001357 3.8e-17 92.0 107 45.8
FAN28G1915 Fragaria x ananassa HOM05D001516 ORTHO05D001357 1.1e-16 90.5 108 45.4
Potri.005G101000 Populus trichocarpa HOM05D001516 ORTHO05D001357 1.9e-16 89.7 100 45.0
MD15G1232500 Malus domestica HOM05D001516 ORTHO05D001357 3.2e-16 89.0 101 43.6
MD02G1117800 Malus domestica HOM05D001516 ORTHO05D001357 1.2e-15 87.0 101 43.6
Lalb_Chr16g0391621 Lupinus albus HOM05D001516 ORTHO05D001357 2.1e-15 86.3 99 44.4
Aqoxy6G01631 Aquilegia oxysepala HOM05D001516 ORTHO05D001357 3.5e-15 85.5 107 43.9
Cfa007075 Carpinus fangiana HOM05D001516 ORTHO05D001357 1.3e-14 83.6 86 50.0
arahy.Tifrunner.gnm1.ann1.G1MIMQ Arachis hypogaea HOM05D001516 ORTHO05D001357 3.9e-14 82.0 104 43.3
arahy.Tifrunner.gnm1.ann1.JXS3UT Arachis hypogaea HOM05D001516 ORTHO05D001357 8.7e-14 80.9 104 43.3
Glyma.01G159200 Glycine max HOM05D001516 ORTHO05D001357 3.3e-13 79.0 99 42.4
Medtr5g024070 Medicago truncatula HOM05D001516 ORTHO05D001357 3.3e-13 79.0 101 44.6
Glyma.11G085500 Glycine max HOM05D001516 ORTHO05D001357 5.7e-13 78.2 99 42.4
COL.COLO4_13416 Corchorus olitorius HOM05D001516 ORTHO05D001357 1.3e-12 77.0 74 51.4
Sabra05G0083500 Salix brachista HOM05D001516 ORTHO05D001357 1.3e-12 77.0 86 45.3
TPR.G8368 Trifolium pratense HOM05D001516 ORTHO05D001357 3.7e-12 75.5 106 43.4
Phvul.002G116000 Phaseolus vulgaris HOM05D001516 ORTHO05D001357 6.3e-12 74.7 99 43.4
VMungo1215G1384 Vigna mungo HOM05D001516 ORTHO05D001357 8.2e-12 74.3 99 40.4
CANSAT25G2192 Cannabis sativa HOM05D001516 ORTHO05D001357 1.8e-11 73.2 113 37.2
Psat2g149160 Pisum sativum HOM05D001516 ORTHO05D001357 1.8e-11 73.2 102 42.2
Carub.0007s0471 Capsella rubella HOM05D001516 ORTHO05D001357 1.0e-09 67.4 103 40.8
Lj2g0007675 Lotus japonicus HOM05D001516 ORTHO05D001357 2.2e-09 66.2 119 35.3
arahy.Tifrunner.gnm1.ann1.MYS8SE Arachis hypogaea HOM05D001516 ORTHO05D001357 2.9e-09 65.9 100 36.0
Atru.chr3.137 Acer truncatum HOM05D001516 ORTHO05D001357 8.5e-09 64.3 76 44.7
ATR0807G179 Amborella trichopoda HOM05D001516 ORTHO05D001357 8.5e-09 64.3 111 36.9
CARHR243930 Cardamine hirsuta HOM05D001516 ORTHO05D001357 8.5e-09 64.3 101 36.6
arahy.Tifrunner.gnm1.ann1.F3ZCPW Arachis hypogaea HOM05D001516 ORTHO05D001357 1.8e-06 56.6 95 38.9
arahy.Tifrunner.gnm1.ann1.ZR07MJ Arachis hypogaea HOM05D001516 ORTHO05D001357 1.8e-06 56.6 95 38.9


User provided reference genes

Program Settings