Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0004014 Camellia sinensis var. sinensis HOM05D002165 ORTHO05D001531 4.2e-46 187.6 89 100.0
CSS0044388 Camellia sinensis var. sinensis HOM05D002165 ORTHO05D001531 3.5e-32 141.4 77 89.6
Ciclev10013222m.g Citrus clementina HOM05D002165 ORTHO05D001531 1.6e-13 79.3 73 57.5
Ciclev10013220m.g Citrus clementina HOM05D002165 ORTHO05D001531 1.4e-12 76.3 73 54.8
Ciclev10013801m.g Citrus clementina HOM05D002165 ORTHO05D001531 4.0e-12 74.7 73 56.2
Rhsim11G0104900 Rhododendron simsii HOM05D002165 ORTHO05D001531 6.8e-12 73.9 68 60.3
MD04G1186400 Malus domestica HOM05D002165 ORTHO05D001531 5.7e-11 70.9 70 48.6
Actinidia17737 Actinidia chinensis HOM05D002165 ORTHO05D001531 7.5e-11 70.5 74 51.4
Ciclev10013684m.g Citrus clementina HOM05D002165 ORTHO05D001531 1.3e-10 69.7 73 53.4
FAN05G4164 Fragaria x ananassa HOM05D002165 ORTHO05D001531 2.8e-10 68.6 70 48.6
THA.LOC104818754 Tarenaya hassleriana HOM05D002165 ORTHO05D001531 2.8e-10 68.6 80 42.5
FAN02G1676 Fragaria x ananassa HOM05D002165 ORTHO05D001531 6.3e-10 67.4 70 47.1
FAN09G0584 Fragaria x ananassa HOM05D002165 ORTHO05D001531 6.3e-10 67.4 70 47.1
Prupe.6G304300 Prunus persica HOM05D002165 ORTHO05D001531 6.3e-10 67.4 70 48.6
CSS0027376 Camellia sinensis var. sinensis HOM05D002165 ORTHO05D001531 8.3e-10 67.0 61 57.4
Oeu062787.1 Olea europaea HOM05D002165 ORTHO05D001531 8.3e-10 67.0 68 57.4
Prupe.6G304200 Prunus persica HOM05D002165 ORTHO05D001531 1.1e-09 66.6 70 48.6
Atru.chr12.1534 Acer truncatum HOM05D002165 ORTHO05D001531 1.8e-09 65.9 69 47.8
Atru.chr12.1536 Acer truncatum HOM05D002165 ORTHO05D001531 1.8e-09 65.9 69 47.8
Cpa.g.sc48.225 Carica papaya HOM05D002165 ORTHO05D001531 1.8e-09 65.9 77 46.8
FvH4_6g08530 Fragaria vesca HOM05D002165 ORTHO05D001531 1.8e-09 65.9 70 47.1
FAN14G5435 Fragaria x ananassa HOM05D002165 ORTHO05D001531 1.8e-09 65.9 70 47.1
Migut.N00975 Erythranthe guttata HOM05D002165 ORTHO05D001531 3.1e-09 65.1 69 53.6
Eucgr.H01323 Eucalyptus grandis HOM05D002165 ORTHO05D001531 4.1e-09 64.7 74 43.2
Eucgr.H01332 Eucalyptus grandis HOM05D002165 ORTHO05D001531 4.1e-09 64.7 69 47.8
Ciclev10010714m.g Citrus clementina HOM05D002165 ORTHO05D001531 5.4e-09 64.3 77 48.1
Solyc01g101260.2 Solanum lycopersicum HOM05D002165 ORTHO05D001531 7.0e-09 63.9 60 50.0
Sopen01g044710 Solanum pennellii HOM05D002165 ORTHO05D001531 7.0e-09 63.9 60 50.0
Eucgr.H01321 Eucalyptus grandis HOM05D002165 ORTHO05D001531 9.2e-09 63.5 75 44.0
arahy.Tifrunner.gnm1.ann1.RMBA11 Arachis hypogaea HOM05D008018 ORTHO05D001531 1.2e-08 63.2 69 52.2
RcHm_v2.0_Chr1g0321401 Rosa chinensis HOM05D002165 ORTHO05D001531 2.0e-08 62.4 70 45.7
arahy.Tifrunner.gnm1.ann1.1WI4WZ Arachis hypogaea HOM05D008018 ORTHO05D001531 2.7e-08 62.0 69 50.7
Ca_10205_v3 Cicer arietinum L. HOM05D008018 ORTHO05D001531 3.5e-08 61.6 70 45.7
Manes.08G107400 Manihot esculenta HOM05D002165 ORTHO05D001531 3.5e-08 61.6 72 55.6
Manes.15G075800 Manihot esculenta HOM05D002165 ORTHO05D001531 4.5e-08 61.2 72 48.6
Oeu062790.1 Olea europaea HOM05D002165 ORTHO05D001531 4.5e-08 61.2 71 47.9
Eucgr.H01327 Eucalyptus grandis HOM05D002165 ORTHO05D001531 5.9e-08 60.8 69 47.8
Eucgr.H01329 Eucalyptus grandis HOM05D002165 ORTHO05D001531 5.9e-08 60.8 69 47.8
Eucgr.H01333 Eucalyptus grandis HOM05D002165 ORTHO05D001531 5.9e-08 60.8 70 44.3
Thhalv10021847m.g Eutrema salsugineum HOM05D002165 ORTHO05D001531 7.8e-08 60.5 81 40.7
Sed0002745 Sechium edule HOM05D002165 ORTHO05D001531 7.8e-08 60.5 73 49.3
Cc02_g35880 Coffea canephora HOM05D002165 ORTHO05D001531 1.0e-07 60.1 70 50.0
Glyma.19G225200 Glycine max HOM05D008018 ORTHO05D001531 1.0e-07 60.1 72 45.8
Phvul.007G205300 Phaseolus vulgaris HOM05D008018 ORTHO05D001531 1.0e-07 60.1 88 42.0
BcaC01g04301 Brassica carinata HOM05D002165 ORTHO05D001531 1.3e-07 59.7 81 39.5
C03p41790 Brassica napus HOM05D002165 ORTHO05D001531 1.3e-07 59.7 81 39.5
BolC3t16462H Brassica oleracea HOM05D002165 ORTHO05D001531 1.3e-07 59.7 81 39.5
BcaNung03681 Brassica carinata HOM05D002165 ORTHO05D001531 1.7e-07 59.3 69 43.5
BcaNung03907 Brassica carinata HOM05D002165 ORTHO05D001531 1.7e-07 59.3 69 43.5
A06p36950 Brassica napus HOM05D002165 ORTHO05D001531 1.7e-07 59.3 69 43.5
C07p41550 Brassica napus HOM05D002165 ORTHO05D001531 1.7e-07 59.3 69 43.5
BolC7t44687H Brassica oleracea HOM05D002165 ORTHO05D001531 1.7e-07 59.3 69 43.5
BraA06t26620Z Brassica rapa HOM05D002165 ORTHO05D001531 1.7e-07 59.3 69 43.5
Eucgr.H01326 Eucalyptus grandis HOM05D002165 ORTHO05D001531 1.7e-07 59.3 69 46.4
Nitab4.5_0002516g0010 Nicotiana tabacum HOM05D002165 ORTHO05D001531 1.7e-07 59.3 72 50.0
Nitab4.5_0005662g0010 Nicotiana tabacum HOM05D002165 ORTHO05D001531 1.7e-07 59.3 72 48.6
Oeu000103.1 Olea europaea HOM05D008018 ORTHO05D001531 1.7e-07 59.3 68 50.0
Peaxi162Scf00194g00002 Petunia axillaris HOM05D002165 ORTHO05D001531 1.7e-07 59.3 71 46.5
Glyma.03G228000 Glycine max HOM05D008018 ORTHO05D001531 2.3e-07 58.9 72 44.4
CAN.G1248.15 Capsicum annuum HOM05D002165 ORTHO05D001531 2.9e-07 58.5 69 46.4
DCAR_002291 Daucus carota HOM05D002165 ORTHO05D001531 2.9e-07 58.5 68 48.5
Eucgr.H01331 Eucalyptus grandis HOM05D002165 ORTHO05D001531 2.9e-07 58.5 69 47.8
Eucgr.L03552 Eucalyptus grandis HOM05D002165 ORTHO05D001531 2.9e-07 58.5 71 43.7
Glyma.10G143200 Glycine max HOM05D008018 ORTHO05D001531 2.9e-07 58.5 91 41.8
Sed0018337 Sechium edule HOM05D002165 ORTHO05D001531 2.9e-07 58.5 72 48.6
BcaB04g19240 Brassica carinata HOM05D002165 ORTHO05D001531 3.9e-07 58.2 81 38.3
A03p34320 Brassica napus HOM05D002165 ORTHO05D001531 3.9e-07 58.2 81 38.3
BraA03t12608Z Brassica rapa HOM05D002165 ORTHO05D001531 3.9e-07 58.2 81 38.3
Migut.B00883 Erythranthe guttata HOM05D002165 ORTHO05D001531 3.9e-07 58.2 68 50.0
Lj5g0006453 Lotus japonicus HOM05D008018 ORTHO05D001531 3.9e-07 58.2 72 47.2
Lj5g0009947 Lotus japonicus HOM05D008018 ORTHO05D001531 3.9e-07 58.2 72 47.2
Phvul.001G221900 Phaseolus vulgaris HOM05D008018 ORTHO05D001531 3.9e-07 58.2 70 45.7
QL03p011025 Quercus lobata HOM05D016210 ORTHO05D001531 3.9e-07 58.2 77 39.0
TAR362G0276 Trochodendron aralioides HOM05D002165 ORTHO05D001531 3.9e-07 58.2 83 43.4
BcaB07g29941 Brassica carinata HOM05D002165 ORTHO05D001531 5.0e-07 57.8 69 43.5
Eucgr.H01330 Eucalyptus grandis HOM05D002165 ORTHO05D001531 5.0e-07 57.8 69 46.4
Nitab4.5_0000800g0060 Nicotiana tabacum HOM05D002165 ORTHO05D001531 5.0e-07 57.8 70 48.6
Nitab4.5_0003573g0030 Nicotiana tabacum HOM05D002165 ORTHO05D001531 5.0e-07 57.8 70 48.6
Nitab4.5_0003573g0040 Nicotiana tabacum HOM05D002165 ORTHO05D001531 5.0e-07 57.8 70 48.6
Carub.0006s2437 Capsella rubella HOM05D002165 ORTHO05D001531 6.6e-07 57.4 75 41.3
Eucgr.H01328 Eucalyptus grandis HOM05D002165 ORTHO05D001531 6.6e-07 57.4 69 46.4
Aqoxy5G02840 Aquilegia oxysepala HOM05D002165 ORTHO05D001531 8.6e-07 57.0 82 42.7
AT3G05858 Arabidopsis thaliana HOM05D002165 ORTHO05D001531 8.6e-07 57.0 78 38.5
A01p30200 Brassica napus HOM05D002165 ORTHO05D001531 8.6e-07 57.0 81 38.3
BraA02t08873Z Brassica rapa HOM05D002165 ORTHO05D001531 8.6e-07 57.0 68 38.2
Eucgr.H01325 Eucalyptus grandis HOM05D002165 ORTHO05D001531 8.6e-07 57.0 69 44.9
Oeu061905.1 Olea europaea HOM05D002165 ORTHO05D001531 8.6e-07 57.0 69 49.3
Phvul.007G205400 Phaseolus vulgaris HOM05D008018 ORTHO05D001531 8.6e-07 57.0 91 40.7
Phvul.007G205600 Phaseolus vulgaris HOM05D008018 ORTHO05D001531 8.6e-07 57.0 91 40.7
Psat6g154000 Pisum sativum HOM05D008018 ORTHO05D001531 8.6e-07 57.0 69 43.5
AL6G38560 Arabidopsis lyrata HOM05D002165 ORTHO05D001531 1.1e-06 56.6 75 41.3
BcaC03g17834 Brassica carinata HOM05D002165 ORTHO05D001531 1.1e-06 56.6 69 40.6
BcaNung06223 Brassica carinata HOM05D002165 ORTHO05D001531 1.1e-06 56.6 69 40.6
A02p39040 Brassica napus HOM05D002165 ORTHO05D001531 1.1e-06 56.6 69 40.6
C02p58650 Brassica napus HOM05D002165 ORTHO05D001531 1.1e-06 56.6 69 40.6
BolC2t11925H Brassica oleracea HOM05D002165 ORTHO05D001531 1.1e-06 56.6 69 40.6
DCAR_001885 Daucus carota HOM05D002165 ORTHO05D001531 1.1e-06 56.6 65 50.8
QL03p011084 Quercus lobata HOM05D016210 ORTHO05D001531 1.1e-06 56.6 77 39.0
Ca_10202_v3 Cicer arietinum L. HOM05D008018 ORTHO05D001531 1.5e-06 56.2 69 44.9
Ca_10203_v3 Cicer arietinum L. HOM05D008018 ORTHO05D001531 1.5e-06 56.2 69 44.9
DCAR_001884 Daucus carota HOM05D002165 ORTHO05D001531 1.5e-06 56.2 66 50.0
RcHm_v2.0_Chr3g0458591 Rosa chinensis HOM05D002165 ORTHO05D001531 1.5e-06 56.2 71 43.7
CARHR186860 Cardamine hirsuta HOM05D002165 ORTHO05D001531 1.9e-06 55.8 75 41.3
Glyma.10G143000 Glycine max HOM05D008018 ORTHO05D001531 1.9e-06 55.8 91 40.7
Lj1g0006603 Lotus japonicus HOM05D008018 ORTHO05D001531 1.9e-06 55.8 69 46.4
Aa31LG11G9930 Aethionema arabicum HOM05D002165 ORTHO05D001531 2.5e-06 55.5 78 42.3
BcaC09g47857 Brassica carinata HOM05D002165 ORTHO05D001531 2.5e-06 55.5 81 38.3
BolC1t05659H Brassica oleracea HOM05D002165 ORTHO05D001531 2.5e-06 55.5 81 38.3
BraA01t04469Z Brassica rapa HOM05D002165 ORTHO05D001531 2.5e-06 55.5 81 38.3
Carub.0003s0521 Capsella rubella HOM05D002165 ORTHO05D001531 2.5e-06 55.5 79 39.2
AUR62000479 Chenopodium quinoa HOM05D002165 ORTHO05D001531 2.5e-06 55.5 46 56.5
AUR62006822 Chenopodium quinoa HOM05D002165 ORTHO05D001531 2.5e-06 55.5 46 56.5
Dinv30952 Davidia involucrata HOM05D002165 ORTHO05D001531 2.5e-06 55.5 56 53.6
Glyma.20G091900 Glycine max HOM05D008018 ORTHO05D001531 2.5e-06 55.5 72 45.8
Lsat_1_v5_gn_9_85041 Lactuca sativa HOM05D002165 ORTHO05D001531 2.5e-06 55.5 66 48.5
Psat6g153800 Pisum sativum HOM05D008018 ORTHO05D001531 2.5e-06 55.5 69 42.0
AL3G16610 Arabidopsis lyrata HOM05D002165 ORTHO05D001531 3.3e-06 55.1 79 38.0
BcaB04g19717 Brassica carinata HOM05D002165 ORTHO05D001531 3.3e-06 55.1 74 37.8
CARHR080310 Cardamine hirsuta HOM05D002165 ORTHO05D001531 3.3e-06 55.1 79 39.2
ClCG00G002170 Citrullus lanatus HOM05D002165 ORTHO05D001531 3.3e-06 55.1 74 47.3
ClCG08G002310 Citrullus lanatus HOM05D002165 ORTHO05D001531 3.3e-06 55.1 74 47.3
ClCG08G002360 Citrullus lanatus HOM05D002165 ORTHO05D001531 3.3e-06 55.1 74 47.3
DCAR_001887 Daucus carota HOM05D002165 ORTHO05D001531 3.3e-06 55.1 72 41.7
DCAR_002292 Daucus carota HOM05D002165 ORTHO05D001531 3.3e-06 55.1 67 43.3
Glyma.10G143300 Glycine max HOM05D008018 ORTHO05D001531 3.3e-06 55.1 73 45.2
VMungo0720G1916 Vigna mungo HOM05D008018 ORTHO05D001531 3.3e-06 55.1 76 40.8
BcaC04g23632 Brassica carinata HOM05D002165 ORTHO05D001531 4.3e-06 54.7 70 38.6
A09p05720 Brassica napus HOM05D002165 ORTHO05D001531 4.3e-06 54.7 70 38.6
C09p06310 Brassica napus HOM05D002165 ORTHO05D001531 4.3e-06 54.7 70 38.6
BolC9t53551H Brassica oleracea HOM05D002165 ORTHO05D001531 4.3e-06 54.7 70 38.6
BraA09t36213Z Brassica rapa HOM05D002165 ORTHO05D001531 4.3e-06 54.7 70 38.6
MELO3C025017.2 Cucumis melo HOM05D002165 ORTHO05D001531 4.3e-06 54.7 75 44.0
DCAR_001886 Daucus carota HOM05D002165 ORTHO05D001531 4.3e-06 54.7 68 45.6
Thecc.09G084900 Theobroma cacao HOM05D002165 ORTHO05D001531 4.3e-06 54.7 77 41.6
GSVIVG01017704001 Vitis vinifera HOM05D002165 ORTHO05D001531 4.3e-06 54.7 75 45.3
GSVIVG01017705001 Vitis vinifera HOM05D002165 ORTHO05D001531 4.3e-06 54.7 75 45.3
GSVIVG01017706001 Vitis vinifera HOM05D002165 ORTHO05D001531 4.3e-06 54.7 75 45.3
Ah.06g190740 Amaranthus hybridus HOM05D002165 ORTHO05D001531 5.6e-06 54.3 60 45.0
Lalb_Chr02g0147531 Lupinus albus HOM05D008018 ORTHO05D001531 5.6e-06 54.3 64 48.4
Sp3g04720 Schrenkiella parvula HOM05D002165 ORTHO05D001531 5.6e-06 54.3 81 37.0
Sed0026735 Sechium edule HOM05D002165 ORTHO05D001531 5.6e-06 54.3 75 48.0
GSVIVG01017707001 Vitis vinifera HOM05D002165 ORTHO05D001531 5.6e-06 54.3 75 46.7
EL10Ac4g09564 Beta vulgaris HOM05D002165 ORTHO05D001531 7.3e-06 53.9 34 67.6
Ca_10204_v3 Cicer arietinum L. HOM05D008018 ORTHO05D001531 7.3e-06 53.9 70 45.7
MELO3C015240.2 Cucumis melo HOM05D002165 ORTHO05D001531 7.3e-06 53.9 95 37.9
Thhalv10005460m.g Eutrema salsugineum HOM05D002165 ORTHO05D001531 7.3e-06 53.9 78 42.3
Medtr0187s0030 Medicago truncatula HOM05D008018 ORTHO05D001531 7.3e-06 53.9 73 45.2
Medtr0187s0060 Medicago truncatula HOM05D008018 ORTHO05D001531 7.3e-06 53.9 73 45.2
Psat2g102520 Pisum sativum HOM05D008018 ORTHO05D001531 7.3e-06 53.9 69 42.0
PGR083G0845 Punica granatum HOM05D002165 ORTHO05D001531 7.3e-06 53.9 79 39.2
PGSC0003DMG400018282 Solanum tuberosum HOM05D002165 ORTHO05D001531 7.3e-06 53.9 51 49.0
Aa31LG5G16230 Aethionema arabicum HOM05D002165 ORTHO05D001531 9.5e-06 53.5 80 40.0
Ah.10g026790 Amaranthus hybridus HOM05D002165 ORTHO05D001531 9.5e-06 53.5 49 53.1
Eucgr.H01324 Eucalyptus grandis HOM05D002165 ORTHO05D001531 9.5e-06 53.5 69 43.5
Lalb_Chr21g0310041 Lupinus albus HOM05D008018 ORTHO05D001531 9.5e-06 53.5 72 45.8
Nitab4.5_0003573g0050 Nicotiana tabacum HOM05D002165 ORTHO05D001531 9.5e-06 53.5 62 48.4
Psat4g020920 Pisum sativum HOM05D002165 ORTHO05D001531 9.5e-06 53.5 72 40.3
Sed0009609 Sechium edule HOM05D002165 ORTHO05D001531 9.5e-06 53.5 71 49.3


User provided reference genes

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