Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0003990 Camellia sinensis var. sinensis HOM05D008142 ORTHO05D009674 7.3e-109 397.1 186 100.0
CSS0017983 Camellia sinensis var. sinensis HOM05D008142 ORTHO05D009674 1.9e-104 382.5 186 97.3
Dinv13326 Davidia involucrata HOM05D000230 ORTHO05D000176 1.0e-46 190.7 173 60.1
Actinidia35170 Actinidia chinensis HOM05D008142 ORTHO05D009674 6.3e-44 181.4 182 57.7
RhsimUnG0205300 Rhododendron simsii HOM05D008142 ORTHO05D009674 1.7e-41 173.3 182 53.8
CSS0032813 Camellia sinensis var. sinensis HOM05D008142 ORTHO05D009674 2.9e-41 172.6 192 54.7
RhsimUnG0205200 Rhododendron simsii HOM05D008142 ORTHO05D009674 6.5e-41 171.4 184 54.9
Actinidia18850 Actinidia chinensis HOM05D008142 ORTHO05D009674 9.4e-40 167.5 166 58.4
Dinv26679 Davidia involucrata HOM05D008142 ORTHO05D009674 5.2e-38 161.8 146 63.0
Hma1.2p1_0280F.1_g112890 Hydrangea macrophylla HOM05D008142 ORTHO05D009674 9.7e-37 157.5 190 51.6
Nn3g20734 Nelumbo nucifera HOM05D008142 ORTHO05D009674 2.6e-29 132.9 189 46.0
Nn4g26546 Nelumbo nucifera HOM05D008142 ORTHO05D009674 7.5e-29 131.3 182 45.6
Oeu020029.1 Olea europaea HOM05D008142 ORTHO05D009674 2.2e-28 129.8 183 47.5
Oeu001311.1 Olea europaea HOM05D008142 ORTHO05D009674 6.3e-28 128.3 182 46.7
Cfa019469 Carpinus fangiana HOM05D008142 ORTHO05D009674 4.1e-27 125.6 185 43.2
Haze_08481 Corylus avellana HOM05D008142 ORTHO05D009674 2.3e-25 119.8 185 42.7
QL04p069987 Quercus lobata HOM05D008142 ORTHO05D009674 2.9e-25 119.4 182 46.2
Eucgr.F03213 Eucalyptus grandis HOM05D008142 ORTHO05D009674 6.8e-22 108.2 185 40.5
Lsat_1_v5_gn_7_100541 Lactuca sativa HOM05D008142 ORTHO05D009674 1.5e-21 107.1 177 43.5
Thecc.07G144200 Theobroma cacao HOM05D008142 ORTHO05D009674 1.5e-21 107.1 174 37.4
ECA236G2480 Erigeron canadensis HOM05D002418 ORTHO05D002572 9.8e-21 104.4 182 37.9
MSTRG.15018 Avicennia marina HOM05D008142 ORTHO05D009674 1.3e-20 104.0 182 39.0
TAR629G2490 Trochodendron aralioides HOM05D008142 ORTHO05D009674 1.3e-20 104.0 171 44.4
TAR627G0365 Trochodendron aralioides HOM05D008142 ORTHO05D009674 4.9e-20 102.1 183 43.2
Thecc.07G144400 Theobroma cacao HOM05D008142 ORTHO05D009674 1.1e-19 100.9 178 38.8
COL.COLO4_17432 Corchorus olitorius HOM05D008142 ORTHO05D009674 1.4e-19 100.5 172 37.2
QL04p069966 Quercus lobata HOM05D008142 ORTHO05D009674 3.1e-19 99.4 166 42.2
Potri.001G379300 Populus trichocarpa HOM05D015893 ORTHO05D009674 1.2e-18 97.4 194 43.3
Nitab4.5_0020402g0010 Nicotiana tabacum HOM05D011950 ORTHO05D009674 1.6e-18 97.1 202 38.6
Nitab4.5_0004038g0010 Nicotiana tabacum HOM05D011950 ORTHO05D009674 2.7e-18 96.3 193 39.4
Migut.M00615 Erythranthe guttata HOM05D019704 ORTHO05D009674 7.8e-18 94.7 156 39.7
RcHm_v2.0_Chr5g0028181 Rosa chinensis HOM05D008142 ORTHO05D009674 1.7e-17 93.6 174 37.4
Prupe.4G151500 Prunus persica HOM05D015893 ORTHO05D019166 2.9e-17 92.8 191 37.2
Gorai.002G040600 Gossypium raimondii HOM05D008142 ORTHO05D009674 3.9e-17 92.4 174 33.9
Prupe.4G151600 Prunus persica HOM05D008142 ORTHO05D009674 6.6e-17 91.7 195 40.5
Nitab4.5_0007142g0040 Nicotiana tabacum HOM05D011950 ORTHO05D009674 8.6e-17 91.3 173 40.5
Gohir.A01G043100 Gossypium hirsutum HOM05D008142 ORTHO05D009674 1.1e-16 90.9 174 34.5
Gohir.D01G033500 Gossypium hirsutum HOM05D008142 ORTHO05D009674 1.1e-16 90.9 174 33.9
Gohir.D01G033700 Gossypium hirsutum HOM05D008142 ORTHO05D009674 1.5e-16 90.5 174 34.5
Gohir.A01G043000 Gossypium hirsutum HOM05D008142 ORTHO05D009674 1.9e-16 90.1 174 32.2
FAN21G3515 Fragaria x ananassa HOM05D008142 ORTHO05D009674 2.5e-16 89.7 186 36.6
Gohir.A01G042900 Gossypium hirsutum HOM05D008142 ORTHO05D009674 2.5e-16 89.7 174 33.9
Gorai.002G040500 Gossypium raimondii HOM05D008142 ORTHO05D009674 4.3e-16 89.0 174 33.3
Potri.001G379400 Populus trichocarpa HOM05D008142 ORTHO05D009674 4.3e-16 89.0 176 41.5
Nitab4.5_0000639g0100 Nicotiana tabacum HOM05D011950 ORTHO05D009674 5.6e-16 88.6 131 47.3
DCAR_021049 Daucus carota HOM05D008142 ORTHO05D009674 1.2e-15 87.4 197 38.1
Peaxi162Scf00000g00523 Petunia axillaris HOM05D011950 ORTHO05D009674 1.2e-15 87.4 181 38.7
Gohir.D01G033600 Gossypium hirsutum HOM05D008142 ORTHO05D009674 2.8e-15 86.3 177 32.8
Gorai.002G040900 Gossypium raimondii HOM05D008142 ORTHO05D009674 2.8e-15 86.3 176 31.2
FvH4_3g16940 Fragaria vesca HOM05D008142 ORTHO05D009674 4.7e-15 85.5 173 36.4
FAN11G1471 Fragaria x ananassa HOM05D008142 ORTHO05D009674 4.7e-15 85.5 173 36.4
PGSC0003DMG400008560 Solanum tuberosum HOM05D011950 ORTHO05D009674 4.7e-15 85.5 172 38.4
Gorai.002G040800 Gossypium raimondii HOM05D008142 ORTHO05D009674 8.0e-15 84.7 174 33.3
Aqoxy1G01717 Aquilegia oxysepala HOM05D008142 ORTHO05D009674 1.0e-14 84.3 196 35.7
Gohir.A01G043200 Gossypium hirsutum HOM05D008142 ORTHO05D009674 1.4e-14 84.0 176 30.1
FAN16G2943 Fragaria x ananassa HOM05D008142 ORTHO05D009674 1.8e-14 83.6 173 35.8
Gohir.D01G033400 Gossypium hirsutum HOM05D008142 ORTHO05D009674 4.0e-14 82.4 177 32.8
Gorai.002G040700 Gossypium raimondii HOM05D008142 ORTHO05D009674 4.0e-14 82.4 174 31.6
Sopen07g030160 Solanum pennellii HOM05D011950 ORTHO05D009674 4.0e-14 82.4 190 35.3
PGSC0003DMG400007050 Solanum tuberosum HOM05D011950 ORTHO05D009674 4.0e-14 82.4 188 34.0
Gohir.A01G042800 Gossypium hirsutum HOM05D008142 ORTHO05D009674 5.2e-14 82.0 177 32.2
MSTRG.6725 Avicennia marina HOM05D008142 ORTHO05D009674 6.8e-14 81.6 184 38.0
Solyc07g061890.1 Solanum lycopersicum HOM05D011950 ORTHO05D009674 1.5e-13 80.5 189 37.6
Thecc.07G144300 Theobroma cacao HOM05D023069 ORTHO05D009674 4.4e-13 79.0 159 40.9
MBI07_g26359_MAGBIO Magnolia biondii HOM05D008142 ORTHO05D009674 5.8e-13 78.6 178 39.3
Sopen12g006760 Solanum pennellii HOM05D011950 ORTHO05D009674 9.8e-13 77.8 176 38.1
DCAR_013786 Daucus carota HOM05D019704 ORTHO05D009674 3.7e-12 75.9 185 36.2
MBI10_g02220_MAGBIO Magnolia biondii HOM05D008142 ORTHO05D009674 3.7e-12 75.9 156 39.1
PGSC0003DMG401021252 Solanum tuberosum HOM05D011950 ORTHO05D009674 3.7e-12 75.9 178 34.8
MD03G1255500 Malus domestica HOM05D008142 ORTHO05D009674 4.9e-12 75.5 199 35.2
Ciclev10022628m.g Citrus clementina HOM05D008142 ORTHO05D009674 6.4e-12 75.1 178 33.7
Sabra16G0249900 Salix brachista HOM05D008142 ORTHO05D009674 1.1e-11 74.3 176 34.7
Aqoxy1G01721 Aquilegia oxysepala HOM05D008142 ORTHO05D009674 1.4e-11 73.9 191 31.4
MD03G1255600 Malus domestica HOM05D015893 ORTHO05D019166 3.2e-11 72.8 194 35.6
Nitab4.5_0004038g0030 Nicotiana tabacum HOM05D026636 ORTHO05D022967 5.4e-11 72.0 179 35.8
TAR626G0317 Trochodendron aralioides HOM05D008142 ORTHO05D009674 7.0e-11 71.6 191 31.9
Cc05_g10420 Coffea canephora HOM05D011950 ORTHO05D009674 9.2e-11 71.2 185 34.1
FvH4_3g16930 Fragaria vesca HOM05D015893 ORTHO05D019166 4.6e-10 68.9 185 33.0
FAN11G0710 Fragaria x ananassa HOM05D015893 ORTHO05D019166 4.6e-10 68.9 185 33.0
FAN16G3477 Fragaria x ananassa HOM05D015893 ORTHO05D019166 4.6e-10 68.9 185 33.0
FAN21G1907 Fragaria x ananassa HOM05D015893 ORTHO05D019166 4.6e-10 68.9 185 33.0
Lj3g0014819 Lotus japonicus HOM05D012055 ORTHO05D014183 4.6e-10 68.9 143 39.9
Lalb_Chr25g0285461 Lupinus albus HOM05D012055 ORTHO05D014183 4.6e-10 68.9 152 32.2
MD11G1276300 Malus domestica HOM05D015893 ORTHO05D019166 1.0e-09 67.8 194 34.0
TAR627G0610 Trochodendron aralioides HOM05D008142 ORTHO05D009674 1.0e-09 67.8 84 47.6
DCAR_017570 Daucus carota HOM05D019704 ORTHO05D009674 1.3e-09 67.4 164 37.2
DCAR_017571 Daucus carota HOM05D019704 ORTHO05D009674 1.3e-09 67.4 160 40.6
DCAR_025853 Daucus carota HOM05D019704 ORTHO05D009674 1.3e-09 67.4 160 40.6
RcHm_v2.0_Chr5g0028161 Rosa chinensis HOM05D015893 ORTHO05D019166 3.9e-09 65.9 181 32.0
TPR.G26609 Trifolium pratense HOM05D010689 ORTHO05D012855 5.0e-09 65.5 148 33.8
COL.COLO4_17430 Corchorus olitorius HOM05D008142 ORTHO05D009674 1.1e-08 64.3 157 33.1
Nitab4.5_0020402g0020 Nicotiana tabacum HOM05D026636 ORTHO05D022967 1.5e-08 63.9 125 39.2
Glyma.15G248000 Glycine max HOM05D012055 ORTHO05D014183 1.9e-08 63.5 178 32.6
Peaxi162Scf00111g01113 Petunia axillaris HOM05D026636 ORTHO05D022967 3.3e-08 62.8 149 34.9
Sabra16G0249800 Salix brachista HOM05D008142 ORTHO05D009674 4.3e-08 62.4 162 37.7
Cpa.g.sc714.2 Carica papaya HOM05D008142 ORTHO05D009674 1.6e-07 60.5 136 37.5
VMungo1080G1331 Vigna mungo HOM05D012055 ORTHO05D014183 3.6e-07 59.3 139 35.3
Glyma.13G260000 Glycine max HOM05D012055 ORTHO05D014183 6.2e-07 58.5 152 31.6
Phvul.005G061600 Phaseolus vulgaris HOM05D012055 ORTHO05D014183 6.2e-07 58.5 141 33.3
THA.LOC104822599 Tarenaya hassleriana HOM05D010899 ORTHO05D012947 6.2e-07 58.5 169 31.4
Nitab4.5_0002209g0210 Nicotiana tabacum HOM05D011950 ORTHO05D009674 8.0e-07 58.2 108 38.0
Peaxi162Scf00111g01112 Petunia axillaris HOM05D011950 ORTHO05D009674 8.0e-07 58.2 136 36.0
Sc16g0007870 Simmondsia chinensis HOM05D008142 ORTHO05D009674 1.1e-06 57.8 161 34.8
Actinidia11208 Actinidia chinensis HOM05D050066 ORTHO05D012532 1.4e-06 57.4 163 28.8
SGA_v2.0_scaffold73G24333 Striga asiatica HOM05D008142 ORTHO05D009674 2.3e-06 56.6 164 32.3
Gohir.D01G033300 Gossypium hirsutum HOM05D023069 ORTHO05D009674 4.0e-06 55.8 143 35.7
Gorai.002G040400 Gossypium raimondii HOM05D023069 ORTHO05D009674 4.0e-06 55.8 135 37.0
Oeu020030.1 Olea europaea HOM05D008142 ORTHO05D009674 5.2e-06 55.5 176 33.5
Psat0s1353g0040 Pisum sativum HOM05D012055 ORTHO05D014183 5.2e-06 55.5 150 35.3


User provided reference genes

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