Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0003978 Camellia sinensis var. sinensis HOM05D006948 ORTHO05D008703 1.5e-39 166.0 101 100.0
Actinidia12660 Actinidia chinensis HOM05D006948 ORTHO05D008703 1.9e-26 122.5 79 79.7
Rhsim01G0137500 Rhododendron simsii HOM05D006948 ORTHO05D008703 6.1e-25 117.5 78 76.9
CiPaw.13G028600 Carya illinoinensis HOM05D006948 ORTHO05D008703 1.4e-21 106.3 79 68.4
AUR62023432 Chenopodium quinoa HOM05D006948 ORTHO05D008703 1.8e-21 105.9 79 65.8
Hund17076 Selenicereus undatus HOM05D006948 ORTHO05D008703 1.8e-21 105.9 74 70.3
Gohir.A08G029800 Gossypium hirsutum HOM05D006948 ORTHO05D008703 4.1e-21 104.8 79 67.1
Gorai.004G039500 Gossypium raimondii HOM05D006948 ORTHO05D008703 9.1e-21 103.6 79 65.8
Nn1g00906 Nelumbo nucifera HOM05D006948 ORTHO05D008703 9.1e-21 103.6 74 70.3
MSTRG.28159 Avicennia marina HOM05D006948 ORTHO05D008703 2.6e-20 102.1 79 65.8
Gohir.D08G040600 Gossypium hirsutum HOM05D006948 ORTHO05D008703 4.5e-20 101.3 79 64.6
arahy.Tifrunner.gnm1.ann1.96FU63 Arachis hypogaea HOM05D006948 ORTHO05D008703 5.9e-20 100.9 78 61.5
arahy.Tifrunner.gnm1.ann1.9NP6XU Arachis hypogaea HOM05D006948 ORTHO05D008703 5.9e-20 100.9 78 61.5
VMungo1383G1377 Vigna mungo HOM05D006948 ORTHO05D008703 5.9e-20 100.9 100 53.0
Duzib138G1111 Durio zibethinus HOM05D006948 ORTHO05D008703 7.7e-20 100.5 79 64.6
Manes.05G052600 Manihot esculenta HOM05D006948 ORTHO05D008703 1.3e-19 99.8 79 60.8
Cfa012992 Carpinus fangiana HOM05D006948 ORTHO05D008703 1.7e-19 99.4 79 63.3
COL.COLO4_12436 Corchorus olitorius HOM05D006948 ORTHO05D008703 1.7e-19 99.4 101 51.5
Nitab4.5_0001818g0020 Nicotiana tabacum HOM05D006948 ORTHO05D008703 1.7e-19 99.4 77 66.2
CsaV3_3G007550 Cucumis sativus L. HOM05D006948 ORTHO05D008703 2.9e-19 98.6 79 65.8
Hma1.2p1_1740F.1_g300040 Hydrangea macrophylla HOM05D006948 ORTHO05D008703 2.9e-19 98.6 76 68.4
Potri.014G054300 Populus trichocarpa HOM05D006948 ORTHO05D008703 2.9e-19 98.6 94 58.5
Ciclev10023020m.g Citrus clementina HOM05D006948 ORTHO05D008703 3.8e-19 98.2 78 64.1
Cc00_g20460 Coffea canephora HOM05D006948 ORTHO05D008703 5.0e-19 97.8 79 63.3
Peaxi162Scf00392g00125 Petunia axillaris HOM05D006948 ORTHO05D008703 5.0e-19 97.8 77 64.9
Thecc.01G389700 Theobroma cacao HOM05D006948 ORTHO05D008703 5.0e-19 97.8 79 62.0
PSO675G6563 Papaver somniferum HOM05D006948 ORTHO05D008703 8.5e-19 97.1 79 58.2
Thecc.01G390200 Theobroma cacao HOM05D006948 ORTHO05D008703 1.4e-18 96.3 79 60.8
PSO732G0264 Papaver somniferum HOM05D006948 ORTHO05D008703 1.9e-18 95.9 97 50.5
Solyc01g090500.4 Solanum lycopersicum HOM05D006948 ORTHO05D008703 1.9e-18 95.9 77 63.6
Sabra14G0040200 Salix brachista HOM05D006948 ORTHO05D008703 2.5e-18 95.5 74 60.8
Medtr7g446140 Medicago truncatula HOM05D006948 ORTHO05D008703 4.2e-18 94.7 78 57.7
Sopen01g036290 Solanum pennellii HOM05D006948 ORTHO05D008703 4.2e-18 94.7 77 63.6
THA.LOC104817199 Tarenaya hassleriana HOM05D006948 ORTHO05D008703 5.5e-18 94.4 77 59.7
Lsat_1_v5_gn_7_10441 Lactuca sativa HOM05D006948 ORTHO05D008703 9.4e-18 93.6 74 64.9
EL10Ac1g00789 Beta vulgaris HOM05D006948 ORTHO05D008703 1.6e-17 92.8 74 62.2
Dinv43640 Davidia involucrata HOM05D006948 ORTHO05D008703 1.6e-17 92.8 90 58.9
AUR62018049 Chenopodium quinoa HOM05D006948 ORTHO05D008703 2.7e-17 92.0 66 68.2
ECA236G1236 Erigeron canadensis HOM05D006948 ORTHO05D008703 3.6e-17 91.7 74 63.5
Phvul.008G140300 Phaseolus vulgaris HOM05D006948 ORTHO05D008703 3.6e-17 91.7 100 47.0
Ca_27396_v3 Cicer arietinum L. HOM05D006948 ORTHO05D008703 4.7e-17 91.3 79 57.0
TWI59G0066 Tripterygium wilfordii HOM05D006948 ORTHO05D008703 6.1e-17 90.9 78 60.3
Atru.chr4.2323 Acer truncatum HOM05D006948 ORTHO05D008703 7.9e-17 90.5 74 62.2
PGR042G1623 Punica granatum HOM05D006948 ORTHO05D008703 1.0e-16 90.1 72 61.1
HanXRQChr06g0168761 Helianthus annuus HOM05D006948 ORTHO05D008703 1.4e-16 89.7 74 63.5
TPR.G39099 Trifolium pratense HOM05D006948 ORTHO05D008703 1.4e-16 89.7 100 48.0
Aa31LG10G14620 Aethionema arabicum HOM05D006948 ORTHO05D008703 2.3e-16 89.0 76 55.3
Glyma.01G074400 Glycine max HOM05D006948 ORTHO05D008703 2.3e-16 89.0 78 56.4
SGA_v2.0_scaffold43G16525 Striga asiatica HOM05D006948 ORTHO05D008703 3.0e-16 88.6 73 60.3
BolC8t51138H Brassica oleracea HOM05D006948 ORTHO05D008703 3.9e-16 88.2 77 54.5
Cpa.g.sc5.223 Carica papaya HOM05D006948 ORTHO05D008703 3.9e-16 88.2 78 55.1
CANSAT21G1424 Cannabis sativa HOM05D006948 ORTHO05D008703 5.1e-16 87.8 79 60.8
Lalb_Chr19g0126621 Lupinus albus HOM05D006948 ORTHO05D008703 1.1e-15 86.7 78 55.1
BcaC07g40567 Brassica carinata HOM05D006948 ORTHO05D008703 1.5e-15 86.3 77 53.2
C08p35470 Brassica napus HOM05D006948 ORTHO05D008703 1.5e-15 86.3 77 53.2
BcaC07g40569 Brassica carinata HOM05D006948 ORTHO05D008703 2.6e-15 85.5 77 53.2
BcaC07g42775 Brassica carinata HOM05D006948 ORTHO05D008703 2.6e-15 85.5 77 53.2
Migut.O00539 Erythranthe guttata HOM05D006948 ORTHO05D008703 2.6e-15 85.5 74 59.5
Eucgr.E01580 Eucalyptus grandis HOM05D006948 ORTHO05D008703 3.3e-15 85.1 73 63.0
Sed0014312 Sechium edule HOM05D006948 ORTHO05D008703 3.3e-15 85.1 99 49.5
AT3G60480 Arabidopsis thaliana HOM05D006948 ORTHO05D008703 1.3e-14 83.2 77 51.9
MD00G1058900 Malus domestica HOM05D006948 ORTHO05D008703 1.3e-14 83.2 74 58.1
Sp5g02740 Schrenkiella parvula HOM05D006948 ORTHO05D008703 1.3e-14 83.2 77 51.9
AL5G42750 Arabidopsis lyrata HOM05D006948 ORTHO05D008703 1.7e-14 82.8 77 50.6
Carub.0005s2721 Capsella rubella HOM05D006948 ORTHO05D008703 1.7e-14 82.8 77 50.6
Migut.N01755 Erythranthe guttata HOM05D006948 ORTHO05D008703 1.7e-14 82.8 74 56.8
RcHm_v2.0_Chr1g0346581 Rosa chinensis HOM05D006948 ORTHO05D008703 1.7e-14 82.8 79 57.0
CARHR170860 Cardamine hirsuta HOM05D006948 ORTHO05D008703 3.7e-14 81.6 77 49.4
Oeu035671.1 Olea europaea HOM05D006948 ORTHO05D008703 1.4e-13 79.7 82 53.7
unitig_0.g2760 Utricularia gibba HOM05D006948 ORTHO05D008703 1.4e-13 79.7 67 64.2
CDE02G3860 Ceratophyllum demersum HOM05D006948 ORTHO05D008703 1.8e-13 79.3 74 56.8
Prupe.2G124300 Prunus persica HOM05D006948 ORTHO05D008703 1.8e-13 79.3 79 53.2
Lj1g0016170 Lotus japonicus HOM05D006948 ORTHO05D008703 3.1e-13 78.6 79 53.2
ATR0057G003 Amborella trichopoda HOM05D006948 ORTHO05D008703 4.1e-13 78.2 74 55.4
CDE11G0572 Ceratophyllum demersum HOM05D006948 ORTHO05D008703 5.3e-13 77.8 74 56.8
FAN10G3172 Fragaria x ananassa HOM05D006948 ORTHO05D008703 5.3e-13 77.8 79 53.2
FAN10G3965 Fragaria x ananassa HOM05D006948 ORTHO05D008703 5.3e-13 77.8 79 53.2
Sc23g0003950 Simmondsia chinensis HOM05D006948 ORTHO05D008703 9.1e-13 77.0 54 70.4
FAN01G0218 Fragaria x ananassa HOM05D006948 ORTHO05D008703 1.2e-12 76.6 79 53.2
FAN03G2439 Fragaria x ananassa HOM05D006948 ORTHO05D008703 1.2e-12 76.6 79 53.2
TAR629G0288 Trochodendron aralioides HOM05D006948 ORTHO05D000005 1.6e-12 76.3 53 69.8
PGSC0003DMG401026039 Solanum tuberosum HOM05D006948 ORTHO05D008703 2.0e-12 75.9 58 65.5
Aqoxy7G00836 Aquilegia oxysepala HOM05D006948 ORTHO05D008703 2.6e-12 75.5 80 51.2
FvH4_7g09680 Fragaria vesca HOM05D006948 ORTHO05D008703 2.6e-12 75.5 79 53.2
FAN06G1163 Fragaria x ananassa HOM05D006948 ORTHO05D008703 2.6e-12 75.5 79 53.2
FAN06G4415 Fragaria x ananassa HOM05D006948 ORTHO05D008703 2.6e-12 75.5 79 53.2
QL04p032282 Quercus lobata HOM05D006948 ORTHO05D008703 2.6e-12 75.5 55 70.9
QL04p031942 Quercus lobata HOM05D006948 ORTHO05D008703 7.7e-12 73.9 75 54.7
QL04p032169 Quercus lobata HOM05D006948 ORTHO05D008703 7.7e-12 73.9 55 67.3
QL04p033225 Quercus lobata HOM05D006948 ORTHO05D008703 7.7e-12 73.9 55 67.3
AUR62013722 Chenopodium quinoa HOM05D006948 ORTHO05D008703 1.3e-11 73.2 54 66.7
ClCG05G000390 Citrullus lanatus HOM05D006948 ORTHO05D008703 2.2e-11 72.4 55 65.5
Nitab4.5_0002874g0090 Nicotiana tabacum HOM05D006948 ORTHO05D008703 2.2e-11 72.4 55 67.3
A09p52730 Brassica napus HOM05D006948 ORTHO05D008703 2.9e-11 72.0 103 39.8
QL04p033368 Quercus lobata HOM05D006948 ORTHO05D008703 3.8e-11 71.6 55 65.5
Haze_02785 Corylus avellana HOM05D006948 ORTHO05D008703 8.5e-11 70.5 55 65.5
Haze_02790 Corylus avellana HOM05D006948 ORTHO05D008703 1.1e-10 70.1 55 65.5
Psat3g154680 Pisum sativum HOM05D006948 ORTHO05D008703 1.1e-10 70.1 76 48.7
Os04g0549400 Oryza sativa ssp. japonica HOM05D006948 ORTHO05D008703 2.5e-10 68.9 74 47.3
MELO3C005977.2 Cucumis melo HOM05D006948 ORTHO05D008703 3.2e-10 68.6 76 52.6
Zm00001eb429840 Zea mays HOM05D006948 ORTHO05D008703 4.2e-10 68.2 74 48.6
Thecc.01G390600 Theobroma cacao HOM05D006948 ORTHO05D008703 5.5e-10 67.8 50 68.0
HPP92_014505 Vanilla planifolia HOM05D006948 ORTHO05D008703 1.2e-09 66.6 68 47.1
SEGI_25204 Sequoiadendron giganteum HOM05D006948 ORTHO05D008703 1.6e-09 66.2 72 51.4
SEGI_39218 Sequoiadendron giganteum HOM05D006948 ORTHO05D008703 1.6e-09 66.2 72 51.4
Medtr7g446470 Medicago truncatula HOM05D006948 ORTHO05D008703 3.6e-09 65.1 50 60.0
SHI13603 Sapria himalayana HOM05D006948 ORTHO05D008703 6.1e-09 64.3 55 56.4
Haze_24986 Corylus avellana HOM05D006948 ORTHO05D008703 6.7e-08 60.8 55 60.0
MD07G1101200 Malus domestica HOM05D006948 ORTHO05D008703 8.8e-08 60.5 71 46.5
SalBow5G2465 Salvia bowleyana HOM05D006948 ORTHO05D008703 1.1e-07 60.1 56 53.6
SalBow5G5528 Salvia bowleyana HOM05D006948 ORTHO05D008703 1.1e-07 60.1 56 53.6
DCAR_025075 Daucus carota HOM05D006948 ORTHO05D008703 3.3e-07 58.5 57 54.4


User provided reference genes

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