Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0003958 Camellia sinensis var. sinensis HOM05D006726 ORTHO05D008328 8.8e-131 470.3 242 100.0
CSS0031538 Camellia sinensis var. sinensis HOM05D006726 ORTHO05D008328 8.8e-131 470.3 242 100.0
CSS0004752 Camellia sinensis var. sinensis HOM05D006726 ORTHO05D008328 1.7e-129 466.1 241 99.6
vmacro04222 Vaccinium macrocarpon HOM05D006726 ORTHO05D008328 1.2e-92 343.6 241 72.6
Actinidia06849 Actinidia chinensis HOM05D006726 ORTHO05D008328 1.4e-91 340.1 241 73.0
CSS0027573 Camellia sinensis var. sinensis HOM05D006726 ORTHO05D008328 3.4e-90 335.5 242 75.2
Dinv13438 Davidia involucrata HOM05D006726 ORTHO05D008328 9.6e-85 317.4 237 73.0
Rhsim13G0230700 Rhododendron simsii HOM05D006726 ORTHO05D008328 1.2e-82 310.5 241 69.3
Actinidia16259 Actinidia chinensis HOM05D006726 ORTHO05D008328 2.0e-74 283.1 243 65.0
Hma1.2p1_0843F.1_g227250 Hydrangea macrophylla HOM05D006726 ORTHO05D008328 3.8e-73 278.9 243 63.4
GSVIVG01025422001 Vitis vinifera HOM05D006726 ORTHO05D008328 1.8e-67 260.0 242 59.1
TAR636G2476 Trochodendron aralioides HOM05D006726 ORTHO05D008328 4.0e-67 258.8 242 59.5
Cc01_g02530 Coffea canephora HOM05D006726 ORTHO05D008328 1.0e-65 254.2 241 56.0
Lj2C718T3 Lonicera japonica HOM05D006726 ORTHO05D008328 1.7e-65 253.4 241 57.7
TWI34G0208 Tripterygium wilfordii HOM05D006726 ORTHO05D008328 2.2e-65 253.1 239 56.9
TWI34G0698 Tripterygium wilfordii HOM05D006726 ORTHO05D008328 2.2e-65 253.1 239 56.9
Prupe.6G006700 Prunus persica HOM05D006726 ORTHO05D008328 1.4e-64 250.4 242 57.9
ECA233G4338 Erigeron canadensis HOM05D006726 ORTHO05D008328 2.5e-64 249.6 241 56.8
FAN21G0710 Fragaria x ananassa HOM05D006726 ORTHO05D008328 3.2e-64 249.2 242 59.5
FAN25G0869 Fragaria x ananassa HOM05D006726 ORTHO05D008328 4.2e-64 248.8 242 59.1
CiPaw.13G175000 Carya illinoinensis HOM05D006726 ORTHO05D008328 5.5e-64 248.4 242 55.8
CANSAT11G1445 Cannabis sativa HOM05D006726 ORTHO05D008328 7.1e-64 248.1 241 56.0
RcHm_v2.0_Chr5g0082841 Rosa chinensis HOM05D006726 ORTHO05D008328 1.6e-63 246.9 239 59.4
FvH4_3g45230 Fragaria vesca HOM05D006726 ORTHO05D008328 2.1e-63 246.5 243 60.1
FAN11G1313 Fragaria x ananassa HOM05D006726 ORTHO05D008328 2.1e-63 246.5 243 60.1
Potri.003G218100 Populus trichocarpa HOM05D006726 ORTHO05D008328 2.1e-63 246.5 242 59.1
Haze_22974 Corylus avellana HOM05D006726 ORTHO05D008328 6.0e-63 245.0 241 55.2
FAN16G2093 Fragaria x ananassa HOM05D006726 ORTHO05D008328 1.0e-62 244.2 242 58.3
MD03G1007100 Malus domestica HOM05D006726 ORTHO05D008328 1.8e-62 243.4 242 56.2
MSTRG.18868 Avicennia marina HOM05D006726 ORTHO05D008328 5.1e-62 241.9 240 53.8
QL01p008136 Quercus lobata HOM05D006726 ORTHO05D008328 5.1e-62 241.9 239 57.7
Sabra03G0162700 Salix brachista HOM05D006726 ORTHO05D008328 1.1e-61 240.7 242 60.3
Manes.03G084600 Manihot esculenta HOM05D006726 ORTHO05D008328 7.4e-61 238.0 246 56.9
Thecc.09G210400 Theobroma cacao HOM05D006726 ORTHO05D008328 9.6e-61 237.7 242 54.5
Duzib170G1137 Durio zibethinus HOM05D006726 ORTHO05D008328 1.4e-59 233.8 242 55.0
Atru.chr3.2327 Acer truncatum HOM05D006726 ORTHO05D008328 1.8e-59 233.4 239 56.5
COL.COLO4_35015 Corchorus olitorius HOM05D006726 ORTHO05D008328 2.4e-59 233.0 243 54.3
HanXRQChr13g0405181 Helianthus annuus HOM05D006726 ORTHO05D008328 1.5e-58 230.3 239 53.6
Ciclev10015417m.g Citrus clementina HOM05D006726 ORTHO05D008328 3.4e-58 229.2 245 53.1
Gohir.A08G011400 Gossypium hirsutum HOM05D006726 ORTHO05D008328 3.4e-58 229.2 241 53.9
Lj4g0004177 Lotus japonicus HOM05D006726 ORTHO05D008328 3.4e-58 229.2 238 52.1
PGR119G2317 Punica granatum HOM05D006726 ORTHO05D008328 4.5e-58 228.8 233 54.5
EL10Ac4g10360 Beta vulgaris HOM05D006726 ORTHO05D008328 7.6e-58 228.0 242 51.7
Glyma.08G113300 Glycine max HOM05D006726 ORTHO05D008328 2.2e-57 226.5 237 53.2
Gohir.D08G021900 Gossypium hirsutum HOM05D006726 ORTHO05D008328 2.9e-57 226.1 241 53.5
Phvul.002G235500 Phaseolus vulgaris HOM05D006726 ORTHO05D008328 3.8e-57 225.7 236 51.7
DCAR_026158 Daucus carota HOM05D006726 ORTHO05D008328 6.5e-57 224.9 233 54.5
Eucgr.J01803 Eucalyptus grandis HOM05D006726 ORTHO05D008328 8.4e-57 224.6 230 54.3
VMungo0251G2876 Vigna mungo HOM05D006726 ORTHO05D008328 8.4e-57 224.6 236 50.4
arahy.Tifrunner.gnm1.ann1.GT4ACT Arachis hypogaea HOM05D006726 ORTHO05D008328 1.4e-56 223.8 238 51.3
Cpa.g.sc119.74 Carica papaya HOM05D006726 ORTHO05D008328 1.9e-56 223.4 243 53.5
TPR.G24412 Trifolium pratense HOM05D006726 ORTHO05D008328 2.5e-56 223.0 240 53.3
arahy.Tifrunner.gnm1.ann1.FL4TQK Arachis hypogaea HOM05D006726 ORTHO05D008328 7.2e-56 221.5 238 51.3
Sc09g0000200 Simmondsia chinensis HOM05D006726 ORTHO05D008328 7.2e-56 221.5 239 51.9
Gorai.004G017200 Gossypium raimondii HOM05D006726 ORTHO05D008328 9.3e-56 221.1 241 53.1
MELO3C015045.2 Cucumis melo HOM05D006726 ORTHO05D008328 1.2e-55 220.7 241 52.7
Medtr8g085620 Medicago truncatula HOM05D006726 ORTHO05D008328 1.6e-55 220.3 236 50.4
Ca_17954_v3 Cicer arietinum L. HOM05D006726 ORTHO05D008328 2.7e-55 219.5 237 51.5
Glyma.05G155400 Glycine max HOM05D006726 ORTHO05D008328 4.6e-55 218.8 237 52.3
AUR62019186 Chenopodium quinoa HOM05D006726 ORTHO05D008328 5.1e-54 215.3 243 49.4
Psat7g073840 Pisum sativum HOM05D006726 ORTHO05D008328 6.7e-54 214.9 239 49.4
ClCG03G012030 Citrullus lanatus HOM05D006726 ORTHO05D008328 1.1e-53 214.2 241 53.1
Aqoxy1G00428 Aquilegia oxysepala HOM05D006726 ORTHO05D008328 2.5e-53 213.0 235 52.8
MBI01_g14456_MAGBIO Magnolia biondii HOM05D006726 ORTHO05D008328 3.3e-53 212.6 237 53.2
Migut.D02543 Erythranthe guttata HOM05D006726 ORTHO05D008328 9.7e-53 211.1 241 49.4
Lalb_Chr07g0186641 Lupinus albus HOM05D006726 ORTHO05D008328 1.3e-52 210.7 237 49.8
Sed0027506 Sechium edule HOM05D006726 ORTHO05D008328 1.3e-52 210.7 241 51.0
Lsat_1_v5_gn_6_52180 Lactuca sativa HOM05D006726 ORTHO05D008328 4.1e-51 205.7 242 52.5
PSO384G1418 Papaver somniferum HOM05D006726 ORTHO05D008328 1.2e-50 204.1 235 52.3
PGSC0003DMG400032136 Solanum tuberosum HOM05D006726 ORTHO05D008328 2.6e-50 203.0 241 48.5
CsaV3_1G043900 Cucumis sativus L. HOM05D006726 ORTHO05D008328 3.4e-50 202.6 241 50.6
PSO339G4123 Papaver somniferum HOM05D006726 ORTHO05D008328 4.5e-50 202.2 235 51.9
CAN.G158.14 Capsicum annuum HOM05D006726 ORTHO05D008328 1.3e-49 200.7 242 50.0
Nitab4.5_0000775g0040 Nicotiana tabacum HOM05D006726 ORTHO05D008328 2.2e-49 199.9 241 49.8
Solyc01g005930.3 Solanum lycopersicum HOM05D006726 ORTHO05D008328 6.5e-49 198.4 241 48.1
Peaxi162Scf00100g00318 Petunia axillaris HOM05D006726 ORTHO05D008328 1.1e-48 197.6 245 47.3
THA.LOC104810333 Tarenaya hassleriana HOM05D006726 ORTHO05D008328 1.4e-48 197.2 244 48.8
Hund07578 Selenicereus undatus HOM05D006726 ORTHO05D008328 2.1e-47 193.4 243 46.9
Nitab4.5_0001059g0100 Nicotiana tabacum HOM05D006726 ORTHO05D008328 1.1e-45 187.6 243 47.3
Sp1g40950 Schrenkiella parvula HOM05D006726 ORTHO05D008328 1.5e-45 187.2 235 48.5
BcaB04g16967 Brassica carinata HOM05D006726 ORTHO05D008328 7.4e-45 184.9 237 48.9
Thhalv10011547m.g Eutrema salsugineum HOM05D006726 ORTHO05D008328 7.4e-45 184.9 238 47.5
A08p00750 Brassica napus HOM05D006726 ORTHO05D008328 4.8e-44 182.2 238 49.2
BraA08t32132Z Brassica rapa HOM05D006726 ORTHO05D008328 4.8e-44 182.2 238 49.2
BcaC01g01509 Brassica carinata HOM05D006726 ORTHO05D008328 8.2e-44 181.4 238 48.3
C03p92580 Brassica napus HOM05D006726 ORTHO05D008328 8.2e-44 181.4 236 47.5
AT1G55280 Arabidopsis thaliana HOM05D006726 ORTHO05D008328 2.4e-43 179.9 236 47.0
SGA_v2.0_scaffold6G03420 Striga asiatica HOM05D006726 ORTHO05D008328 3.1e-43 179.5 230 48.3
SalBow6G1149 Salvia bowleyana HOM05D006726 ORTHO05D008328 4.1e-43 179.1 241 48.5
BolC3t21572H Brassica oleracea HOM05D006726 ORTHO05D008328 6.9e-43 178.3 236 47.0
CARHR044940 Cardamine hirsuta HOM05D006726 ORTHO05D008328 6.9e-43 178.3 235 49.4
ATR0001G014 Amborella trichopoda HOM05D006726 ORTHO05D008328 4.5e-42 175.6 248 45.6
Nn2g15797 Nelumbo nucifera HOM05D006726 ORTHO05D008328 7.7e-42 174.9 172 58.7
AL1G63330 Arabidopsis lyrata HOM05D006726 ORTHO05D008328 1.3e-41 174.1 239 46.4
Sopen01g001940 Solanum pennellii HOM05D006726 ORTHO05D008328 1.3e-41 174.1 241 43.6
Carub.0001s4379 Capsella rubella HOM05D006726 ORTHO05D008328 6.5e-41 171.8 237 46.0
AUR62000016 Chenopodium quinoa HOM05D001875 ORTHO05D008328 3.9e-38 162.5 178 50.0
Aa31LG10G1050 Aethionema arabicum HOM05D006726 ORTHO05D008328 2.8e-36 156.4 236 43.2
Zm00001eb169450 Zea mays HOM05D006726 ORTHO05D008328 7.7e-34 148.3 236 42.4
Os11g0491400 Oryza sativa ssp. japonica HOM05D006726 ORTHO05D008328 2.2e-33 146.7 246 41.1
unitig_749.g13586 Utricularia gibba HOM05D006726 ORTHO05D008328 3.6e-31 139.4 182 47.3
CDE06G2716 Ceratophyllum demersum HOM05D006726 ORTHO05D008328 4.0e-30 136.0 234 40.6
HPP92_006110 Vanilla planifolia HOM05D006726 ORTHO05D008328 4.0e-30 136.0 242 38.8
BcaC01g01511 Brassica carinata HOM05D006726 ORTHO05D008328 2.0e-29 133.7 160 50.0
CDE08G1235 Ceratophyllum demersum HOM05D004967 ORTHO05D006146 8.5e-25 118.2 209 39.2
MBI01_g46957_MAGBIO Magnolia biondii HOM05D006726 ORTHO05D008328 1.5e-24 117.5 135 51.1
Mapoly0036s0044 Marchantia polymorpha HOM05D006726 ORTHO05D008328 1.8e-19 100.5 238 33.2
Pp3c13_13690 Physcomitrium patens HOM05D006726 ORTHO05D008328 1.8e-19 100.5 242 34.3
MBI01_g46956_MAGBIO Magnolia biondii HOM05D006726 ORTHO05D008328 3.1e-11 73.2 91 47.3
SMO268G0018 Selaginella moellendorffii HOM05D006726 ORTHO05D008328 2.7e-10 70.1 229 29.3
AagrBONN_evm.TU.Sc2ySwM_368.685 Anthoceros agrestis HOM05D006726 ORTHO05D008328 1.8e-06 57.4 193 31.6
CBR_g4449 Chara braunii HOM05D006726 ORTHO05D008328 2.3e-06 57.0 131 32.8


User provided reference genes

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