Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0003949 Camellia sinensis var. sinensis HOM05D005256 ORTHO05D006491 8.9e-68 260.8 202 100.0
Rhsim13G0136300 Rhododendron simsii HOM05D005256 ORTHO05D006491 3.1e-60 235.7 134 88.8
CSS0021462 Camellia sinensis var. sinensis HOM05D005256 ORTHO05D006491 1.3e-58 230.3 134 87.3
Dinv07938 Davidia involucrata HOM05D005256 ORTHO05D006491 3.0e-55 219.2 134 84.3
Dinv18415 Davidia involucrata HOM05D005256 ORTHO05D006491 3.0e-55 219.2 134 84.3
Oeu005126.1 Olea europaea HOM05D005256 ORTHO05D006491 1.1e-54 217.2 133 80.5
vmacro03574 Vaccinium macrocarpon HOM05D005256 ORTHO05D006491 1.9e-54 216.5 134 84.3
EL10Ac7g17298 Beta vulgaris HOM05D005256 ORTHO05D006491 4.3e-54 215.3 134 79.9
Peaxi162Scf00888g00114 Petunia axillaris HOM05D005256 ORTHO05D006491 3.6e-53 212.2 134 79.1
Atru.chr10.203 Acer truncatum HOM05D005256 ORTHO05D006491 5.2e-52 208.4 134 79.9
TAR624G1249 Trochodendron aralioides HOM05D005256 ORTHO05D006491 1.2e-51 207.2 134 78.4
Nn1g09867 Nelumbo nucifera HOM05D005256 ORTHO05D006491 1.5e-51 206.8 134 79.1
Oeu052922.1 Olea europaea HOM05D005256 ORTHO05D006491 2.6e-51 206.1 134 75.4
Solyc10g005100.3 Solanum lycopersicum HOM05D005256 ORTHO05D006491 2.6e-51 206.1 134 77.6
Sopen10g001120 Solanum pennellii HOM05D005256 ORTHO05D006491 2.6e-51 206.1 134 77.6
QL11p010746 Quercus lobata HOM05D005256 ORTHO05D006491 3.4e-51 205.7 135 77.0
Glyma.09G047200 Glycine max HOM05D005256 ORTHO05D006491 5.8e-51 204.9 134 79.9
Glyma.15G154700 Glycine max HOM05D005256 ORTHO05D006491 5.8e-51 204.9 134 79.9
GSVIVG01001340001 Vitis vinifera HOM05D005256 ORTHO05D006491 1.7e-50 203.4 134 78.4
CiPaw.09G140800 Carya illinoinensis HOM05D005256 ORTHO05D006491 2.2e-50 203.0 134 75.4
Potri.003G157100 Populus trichocarpa HOM05D005256 ORTHO05D006491 2.2e-50 203.0 134 78.4
Haze_05185 Corylus avellana HOM05D005256 ORTHO05D006491 3.7e-50 202.2 134 76.9
CAN.G465.5 Capsicum annuum HOM05D005256 ORTHO05D006491 4.9e-50 201.8 134 76.9
Sabra03G0114000 Salix brachista HOM05D005256 ORTHO05D006491 4.9e-50 201.8 134 78.4
Lsat_1_v5_gn_2_59820 Lactuca sativa HOM05D005256 ORTHO05D006491 6.4e-50 201.4 134 77.6
Nitab4.5_0004778g0020 Nicotiana tabacum HOM05D005256 ORTHO05D006491 8.3e-50 201.1 133 75.9
Sabra01G0052200 Salix brachista HOM05D005256 ORTHO05D006491 8.3e-50 201.1 134 78.4
arahy.Tifrunner.gnm1.ann1.98CSRD Arachis hypogaea HOM05D005256 ORTHO05D006491 1.1e-49 200.7 134 76.1
arahy.Tifrunner.gnm1.ann1.QDE700 Arachis hypogaea HOM05D005256 ORTHO05D006491 1.1e-49 200.7 134 76.1
PGSC0003DMG400011293 Solanum tuberosum HOM05D005256 ORTHO05D006491 2.4e-49 199.5 134 76.9
Eucgr.D00001 Eucalyptus grandis HOM05D005256 ORTHO05D006491 5.4e-49 198.4 134 76.1
TAR626G1126 Trochodendron aralioides HOM05D005256 ORTHO05D006491 7.1e-49 198.0 131 77.1
Ciclev10016618m.g Citrus clementina HOM05D005256 ORTHO05D006491 9.2e-49 197.6 136 75.7
TWI63G0333 Tripterygium wilfordii HOM05D005256 ORTHO05D006491 9.2e-49 197.6 134 75.4
Ah.15g091820 Amaranthus hybridus HOM05D005256 ORTHO05D006491 1.2e-48 197.2 135 76.3
MSTRG.14820 Avicennia marina HOM05D005256 ORTHO05D006491 2.1e-48 196.4 134 76.1
Phvul.009G245700 Phaseolus vulgaris HOM05D005256 ORTHO05D006491 3.5e-48 195.7 134 76.1
Medtr2g437530 Medicago truncatula HOM05D005256 ORTHO05D006491 4.6e-48 195.3 134 76.1
Hund20133 Selenicereus undatus HOM05D005256 ORTHO05D006491 4.6e-48 195.3 134 72.4
Manes.16G060225 Manihot esculenta HOM05D005256 ORTHO05D006491 6.0e-48 194.9 133 72.9
AUR62040985 Chenopodium quinoa HOM05D005256 ORTHO05D006491 1.0e-47 194.1 134 75.4
TPR.G31382 Trifolium pratense HOM05D005256 ORTHO05D006491 1.0e-47 194.1 134 74.6
Lalb_Chr18g0051841 Lupinus albus HOM05D005256 ORTHO05D006491 1.7e-47 193.4 135 75.6
MD05G1242300 Malus domestica HOM05D005256 ORTHO05D006491 1.7e-47 193.4 135 75.6
Hma1.2p1_0082F.1_g042560 Hydrangea macrophylla HOM05D005256 ORTHO05D006491 3.0e-47 192.6 134 73.1
MBI07_g44405_MAGBIO Magnolia biondii HOM05D005256 ORTHO05D006491 3.0e-47 192.6 134 73.9
Lalb_Chr15g0083621 Lupinus albus HOM05D005256 ORTHO05D006491 5.1e-47 191.8 134 73.1
Lj6g0014214 Lotus japonicus HOM05D005256 ORTHO05D006491 6.6e-47 191.4 134 73.9
Potri.001G073900 Populus trichocarpa HOM05D005256 ORTHO05D006491 1.1e-46 190.7 135 74.8
Psat1g152160 Pisum sativum HOM05D005256 ORTHO05D006491 1.5e-46 190.3 134 73.9
Migut.L00006 Erythranthe guttata HOM05D005256 ORTHO05D006491 3.3e-46 189.1 131 73.3
MD10G1224100 Malus domestica HOM05D005256 ORTHO05D006491 3.3e-46 189.1 135 74.1
Prupe.4G121100 Prunus persica HOM05D005256 ORTHO05D006491 3.3e-46 189.1 135 73.3
Ca_02405_v3 Cicer arietinum L. HOM05D005256 ORTHO05D006491 4.3e-46 188.7 135 73.3
COL.COLO4_25022 Corchorus olitorius HOM05D005256 ORTHO05D006491 7.3e-46 188.0 133 72.2
SalBow7G1744 Salvia bowleyana HOM05D005256 ORTHO05D006491 4.7e-45 185.3 132 69.7
Peaxi162Scf01310g00311 Petunia axillaris HOM05D005256 ORTHO05D006491 8.1e-45 184.5 134 70.9
Sc17g0004300 Simmondsia chinensis HOM05D005256 ORTHO05D006491 1.8e-44 183.3 134 68.7
VMungo1309G1298 Vigna mungo HOM05D005256 ORTHO05D006491 1.8e-44 183.3 134 73.1
HanXRQChr14g0439031 Helianthus annuus HOM05D005256 ORTHO05D006491 2.4e-44 183.0 134 70.1
CANSAT35G0328 Cannabis sativa HOM05D005256 ORTHO05D006491 3.1e-44 182.6 134 69.4
Lsat_1_v5_gn_8_107621 Lactuca sativa HOM05D005256 ORTHO05D006491 4.0e-44 182.2 131 71.8
RcHm_v2.0_Chr5g0022081 Rosa chinensis HOM05D005256 ORTHO05D006491 4.0e-44 182.2 135 71.1
Aa31LG6G2690 Aethionema arabicum HOM05D005256 ORTHO05D006491 6.8e-44 181.4 134 65.7
ECA238G2220 Erigeron canadensis HOM05D005256 ORTHO05D006491 1.2e-43 180.6 131 73.3
ATR0737G015 Amborella trichopoda HOM05D005256 ORTHO05D006491 1.5e-43 180.3 134 71.6
FvH4_3g13370 Fragaria vesca HOM05D005256 ORTHO05D006491 2.0e-43 179.9 135 68.1
FAN11G1371 Fragaria x ananassa HOM05D005256 ORTHO05D006491 2.0e-43 179.9 135 68.1
Cpa.g.sc30.65 Carica papaya HOM05D005256 ORTHO05D006491 2.6e-43 179.5 134 66.4
Cc09_g04590 Coffea canephora HOM05D005256 ORTHO05D006491 2.6e-43 179.5 130 70.0
FAN16G0515 Fragaria x ananassa HOM05D005256 ORTHO05D006491 2.6e-43 179.5 135 68.1
FAN21G0853 Fragaria x ananassa HOM05D005256 ORTHO05D006491 4.4e-43 178.7 135 68.1
CARHR227090 Cardamine hirsuta HOM05D005256 ORTHO05D006491 1.3e-42 177.2 134 65.7
CiPaw.10G108500 Carya illinoinensis HOM05D005256 ORTHO05D006491 1.3e-42 177.2 136 68.4
FAN25G1093 Fragaria x ananassa HOM05D005256 ORTHO05D006491 1.7e-42 176.8 135 67.4
AT4G20260 Arabidopsis thaliana HOM05D005256 ORTHO05D006491 2.9e-42 176.0 133 67.7
HanXRQChr15g0487481 Helianthus annuus HOM05D005256 ORTHO05D006491 3.8e-42 175.6 131 68.7
CDE10G0480 Ceratophyllum demersum HOM05D005256 ORTHO05D006491 8.4e-42 174.5 134 65.7
Thhalv10026094m.g Eutrema salsugineum HOM05D005256 ORTHO05D006491 8.4e-42 174.5 133 66.2
AL7G33640 Arabidopsis lyrata HOM05D005256 ORTHO05D006491 3.2e-41 172.6 133 65.4
Carub.0007s2091 Capsella rubella HOM05D005256 ORTHO05D006491 3.2e-41 172.6 133 64.7
THA.LOC104812925 Tarenaya hassleriana HOM05D005256 ORTHO05D006491 3.2e-41 172.6 130 68.5
CDE10G1097 Ceratophyllum demersum HOM05D005256 ORTHO05D006491 7.1e-41 171.4 134 64.9
Thecc.02G000700 Theobroma cacao HOM05D005256 ORTHO05D006491 1.2e-40 170.6 126 67.5
THA.LOC104811953 Tarenaya hassleriana HOM05D005256 ORTHO05D006491 1.6e-40 170.2 134 64.2
ECA232G1901 Erigeron canadensis HOM05D005256 ORTHO05D006491 3.5e-40 169.1 131 67.9
MBI06_g04184_MAGBIO Magnolia biondii HOM05D005256 ORTHO05D006491 6.0e-40 168.3 134 66.4
BcaC09g51326 Brassica carinata HOM05D005256 ORTHO05D006491 1.0e-39 167.5 133 63.2
A01p11960 Brassica napus HOM05D005256 ORTHO05D006491 1.0e-39 167.5 133 63.2
C01p14230 Brassica napus HOM05D005256 ORTHO05D006491 1.0e-39 167.5 133 63.2
BolC1t01388H Brassica oleracea HOM05D005256 ORTHO05D006491 1.0e-39 167.5 133 63.2
BraA01t01138Z Brassica rapa HOM05D005256 ORTHO05D006491 1.0e-39 167.5 133 63.2
PSO541G2657 Papaver somniferum HOM05D005256 ORTHO05D006491 1.3e-39 167.2 132 65.9
PSO675G8904 Papaver somniferum HOM05D005256 ORTHO05D006491 1.3e-39 167.2 132 65.9
C07p50830 Brassica napus HOM05D005256 ORTHO05D006491 3.0e-39 166.0 133 61.7
BolC7t45581H Brassica oleracea HOM05D005256 ORTHO05D006491 3.0e-39 166.0 133 61.7
BcaNung03497 Brassica carinata HOM05D005256 ORTHO05D006491 3.9e-39 165.6 133 61.7
BraA03t14315Z Brassica rapa HOM05D005256 ORTHO05D006491 5.1e-39 165.2 133 61.7
A03p52380 Brassica napus HOM05D005256 ORTHO05D006491 6.6e-39 164.9 133 60.9
CDE02G1470 Ceratophyllum demersum HOM05D005256 ORTHO05D006491 6.6e-39 164.9 130 66.2
AUR62042105 Chenopodium quinoa HOM05D005256 ORTHO05D006491 8.7e-39 164.5 116 74.1
FAN25G0981 Fragaria x ananassa HOM05D005256 ORTHO05D006491 8.7e-39 164.5 135 65.2
Sp7g18620 Schrenkiella parvula HOM05D005256 ORTHO05D006491 1.9e-38 163.3 133 61.7
HPP92_008810 Vanilla planifolia HOM05D005256 ORTHO05D006491 3.3e-38 162.5 130 68.5
Nitab4.5_0000217g0040 Nicotiana tabacum HOM05D005256 ORTHO05D006491 5.6e-38 161.8 134 66.4
BcaC06g30648 Brassica carinata HOM05D005256 ORTHO05D006491 7.3e-38 161.4 133 59.4
BcaNung03716 Brassica carinata HOM05D005256 ORTHO05D006491 9.0e-36 154.5 129 62.8
HanXRQChr09g0257711 Helianthus annuus HOM05D005256 ORTHO05D006491 1.5e-35 153.7 131 61.8
Os02g0285300 Oryza sativa ssp. japonica HOM05D005256 ORTHO05D006491 5.8e-35 151.8 136 59.6
Aa31LG9G8540 Aethionema arabicum HOM05D005256 ORTHO05D006491 3.8e-34 149.1 134 59.7
Nitab4.5_0012748g0020 Nicotiana tabacum HOM05D005256 ORTHO05D006491 8.4e-34 147.9 107 71.0
BcaC06g34533 Brassica carinata HOM05D005256 ORTHO05D006491 1.2e-32 144.1 132 59.1
C07p27480 Brassica napus HOM05D005256 ORTHO05D006491 1.2e-32 144.1 132 59.1
Nitab4.5_0001253g0020 Nicotiana tabacum HOM05D005256 ORTHO05D006491 1.2e-32 144.1 134 60.4
A06p47070 Brassica napus HOM05D005256 ORTHO05D006491 2.7e-32 142.9 136 57.4
BraA06t27579Z Brassica rapa HOM05D005256 ORTHO05D006491 2.7e-32 142.9 136 57.4
BolC7t43278H Brassica oleracea HOM05D005256 ORTHO05D006491 6.0e-32 141.7 132 58.3
CDE09G1225 Ceratophyllum demersum HOM05D005256 ORTHO05D006491 7.8e-32 141.4 130 58.5
A09p21180 Brassica napus HOM05D005256 ORTHO05D006491 1.3e-31 140.6 136 55.1
BraA09t37724Z Brassica rapa HOM05D005256 ORTHO05D006491 1.3e-31 140.6 136 55.1
BcaC04g21824 Brassica carinata HOM05D005256 ORTHO05D006491 2.3e-31 139.8 136 54.4
C09p27010 Brassica napus HOM05D005256 ORTHO05D006491 2.3e-31 139.8 136 54.4
BolC9t55584H Brassica oleracea HOM05D005256 ORTHO05D006491 2.3e-31 139.8 136 54.4
BcaB07g30940 Brassica carinata HOM05D005256 ORTHO05D006491 3.0e-31 139.4 136 55.1
DCAR_003732 Daucus carota HOM05D005256 ORTHO05D006491 5.1e-31 138.7 131 56.5
BcaB07g30517 Brassica carinata HOM05D005256 ORTHO05D006491 8.7e-31 137.9 137 55.5
Sp2g09430 Schrenkiella parvula HOM05D005256 ORTHO05D006491 3.3e-30 136.0 136 55.9
Zm00001eb119130 Zea mays HOM05D005256 ORTHO05D006491 9.9e-27 124.4 132 55.3
MBI06_g26562_MAGBIO Magnolia biondii HOM05D005256 ORTHO05D006491 4.9e-26 122.1 97 67.0
Zm00001eb339340 Zea mays HOM05D005256 ORTHO05D006491 5.4e-25 118.6 132 53.8
Os01g0233000 Oryza sativa ssp. japonica HOM05D005256 ORTHO05D006491 7.1e-25 118.2 132 52.3
Zm00001eb236850 Zea mays HOM05D005256 ORTHO05D006491 2.7e-24 116.3 114 56.1
C02p45090 Brassica napus HOM05D005256 ORTHO05D006491 1.8e-23 113.6 137 51.1
BolC2t10548H Brassica oleracea HOM05D005256 ORTHO05D006491 1.8e-23 113.6 137 51.1
Lsat_1_v5_gn_9_9820 Lactuca sativa HOM05D005256 ORTHO05D006491 1.3e-21 107.5 99 62.6
Lalb_Chr20g0114421 Lupinus albus HOM05D005256 ORTHO05D006491 1.2e-19 100.9 67 73.1
SGA_v2.0_scaffold51G18675 Striga asiatica HOM05D003701 ORTHO05D004771 1.7e-18 97.1 67 74.6
Mapoly0087s0006 Marchantia polymorpha HOM05D005256 ORTHO05D006491 4.2e-09 65.9 133 35.3
Zm00001eb381370 Zea mays HOM05D005256 ORTHO05D006491 7.1e-09 65.1 69 56.5


User provided reference genes

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