Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0003948 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 2.2e-168 595.5 287 100.0
Rhsim11G0156300 Rhododendron simsii HOM05D004481 ORTHO05D005350 6.1e-131 471.1 288 77.8
CSS0002878 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 5.2e-130 468.0 291 77.0
CSS0015264 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 5.2e-130 468.0 291 77.0
Actinidia27975 Actinidia chinensis HOM05D004481 ORTHO05D005350 7.5e-129 464.2 291 77.0
TAR628G0287 Trochodendron aralioides HOM05D004481 ORTHO05D005350 3.5e-126 455.3 289 76.8
CSS0013759 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 5.0e-125 451.4 291 75.3
TAR376G0836 Trochodendron aralioides HOM05D004481 ORTHO05D005350 4.3e-124 448.4 291 74.9
GSVIVG01037896001 Vitis vinifera HOM05D004481 ORTHO05D005350 2.0e-121 439.5 287 75.3
CiPaw.06G168400 Carya illinoinensis HOM05D004481 ORTHO05D005350 2.2e-120 436.0 291 73.2
Gohir.D12G021400 Gossypium hirsutum HOM05D004481 ORTHO05D005350 2.2e-120 436.0 293 72.4
Gorai.008G021700 Gossypium raimondii HOM05D004481 ORTHO05D005350 2.2e-120 436.0 293 72.4
Thecc.02G111500 Theobroma cacao HOM05D004481 ORTHO05D005350 3.7e-120 435.3 289 72.3
Gohir.A12G021100 Gossypium hirsutum HOM05D004481 ORTHO05D005350 4.9e-120 434.9 292 72.6
Ciclev10028970m.g Citrus clementina HOM05D004481 ORTHO05D005350 1.1e-119 433.7 291 71.5
Duzib052G1089 Durio zibethinus HOM05D004481 ORTHO05D005350 2.4e-119 432.6 291 71.8
Dinv42206 Davidia involucrata HOM05D002228 ORTHO05D005350 9.2e-119 430.6 243 82.7
Lj5A215G63 Lonicera japonica HOM05D004481 ORTHO05D005350 2.1e-118 429.5 328 66.2
Nn1g04655 Nelumbo nucifera HOM05D004481 ORTHO05D005350 3.5e-118 428.7 292 69.9
Hma1.2p1_1023F.1_g248990 Hydrangea macrophylla HOM05D004481 ORTHO05D005350 6.0e-118 427.9 291 72.2
Cpa.g.sc106.118 Carica papaya HOM05D004481 ORTHO05D005350 1.0e-117 427.2 290 71.4
Sabra09G0071800 Salix brachista HOM05D004481 ORTHO05D005350 3.0e-117 425.6 291 70.1
Manes.07G066500 Manihot esculenta HOM05D004481 ORTHO05D005350 5.1e-117 424.9 292 71.6
vmacro01990 Vaccinium macrocarpon HOM05D004481 ORTHO05D005350 6.6e-117 424.5 292 70.2
CANSAT25G3441 Cannabis sativa HOM05D004481 ORTHO05D005350 1.1e-116 423.7 291 70.1
MD10G1100100 Malus domestica HOM05D004481 ORTHO05D005350 4.3e-116 421.8 292 71.2
Potri.001G298500 Populus trichocarpa HOM05D004481 ORTHO05D005350 7.3e-116 421.0 291 69.4
Prupe.8G137600 Prunus persica HOM05D004481 ORTHO05D005350 7.3e-116 421.0 291 69.8
CANSAT25G2190 Cannabis sativa HOM05D004481 ORTHO05D005350 1.6e-115 419.9 291 69.4
Nitab4.5_0001480g0100 Nicotiana tabacum HOM05D004481 ORTHO05D005350 8.1e-115 417.5 286 71.0
PGSC0003DMG400025761 Solanum tuberosum HOM05D004481 ORTHO05D005350 2.3e-114 416.0 286 71.7
RcHm_v2.0_Chr6g0254491 Rosa chinensis HOM05D004481 ORTHO05D005350 3.1e-114 415.6 291 68.4
CsaV3_7G008050 Cucumis sativus L. HOM05D004481 ORTHO05D005350 4.0e-114 415.2 292 69.2
Potri.009G093200 Populus trichocarpa HOM05D004481 ORTHO05D005350 4.0e-114 415.2 291 68.4
Glyma.20G130700 Glycine max HOM05D004481 ORTHO05D005350 5.2e-114 414.8 287 69.0
Nn5g30459 Nelumbo nucifera HOM05D004481 ORTHO05D005350 6.8e-114 414.5 288 70.5
TWI79G1728 Tripterygium wilfordii HOM05D004481 ORTHO05D005350 6.8e-114 414.5 289 69.6
Solyc10g049850.3 Solanum lycopersicum HOM05D004481 ORTHO05D005350 8.9e-114 414.1 286 68.9
Nitab4.5_0003699g0050 Nicotiana tabacum HOM05D004481 ORTHO05D005350 1.2e-113 413.7 297 68.7
Nitab4.5_0002647g0020 Nicotiana tabacum HOM05D004481 ORTHO05D005350 1.5e-113 413.3 286 69.6
Cc02_g19430 Coffea canephora HOM05D004481 ORTHO05D005350 4.4e-113 411.8 291 69.8
PSO210G1902 Papaver somniferum HOM05D004481 ORTHO05D005350 5.8e-113 411.4 291 69.1
CAN.G606.21 Capsicum annuum HOM05D004481 ORTHO05D005350 7.5e-113 411.0 286 70.6
Sc18g0005550 Simmondsia chinensis HOM05D004481 ORTHO05D005350 7.5e-113 411.0 291 68.7
Atru.chr5.2445 Acer truncatum HOM05D004481 ORTHO05D005350 9.9e-113 410.6 291 67.4
Rhsim11G0157800 Rhododendron simsii HOM05D004481 ORTHO05D005350 9.9e-113 410.6 288 70.5
HanXRQChr04g0105981 Helianthus annuus HOM05D004481 ORTHO05D005350 1.3e-112 410.2 291 66.7
PSO170G4403 Papaver somniferum HOM05D004481 ORTHO05D005350 1.7e-112 409.8 292 69.2
FAN24G0473 Fragaria x ananassa HOM05D004481 ORTHO05D005350 2.2e-112 409.5 291 67.0
Peaxi162Scf00016g02527 Petunia axillaris HOM05D004481 ORTHO05D005350 3.7e-112 408.7 324 64.8
Medtr1g107045 Medicago truncatula HOM05D004481 ORTHO05D005350 1.1e-111 407.1 287 67.9
TWI75G0922 Tripterygium wilfordii HOM05D004481 ORTHO05D005350 1.4e-111 406.8 289 69.2
Eucgr.I01088 Eucalyptus grandis HOM05D004481 ORTHO05D005350 2.4e-111 406.0 291 68.7
Psat6g216600 Pisum sativum HOM05D004481 ORTHO05D005350 2.4e-111 406.0 285 67.4
ClCG02G006560 Citrullus lanatus HOM05D004481 ORTHO05D005350 4.1e-111 405.2 302 67.5
MELO3C018500.2 Cucumis melo HOM05D004481 ORTHO05D005350 4.1e-111 405.2 292 69.2
Glyma.10G260500 Glycine max HOM05D004481 ORTHO05D005350 4.1e-111 405.2 289 67.8
TPR.G27083 Trifolium pratense HOM05D004481 ORTHO05D005350 5.4e-111 404.8 287 66.9
FvH4_2g04780 Fragaria vesca HOM05D004481 ORTHO05D005350 7.1e-111 404.4 285 67.7
Sed0018810 Sechium edule HOM05D004481 ORTHO05D005350 9.2e-111 404.1 290 69.0
Lalb_Chr02g0145211 Lupinus albus HOM05D004481 ORTHO05D005350 1.2e-110 403.7 289 67.1
arahy.Tifrunner.gnm1.ann1.5RC8JY Arachis hypogaea HOM05D004481 ORTHO05D005350 1.6e-110 403.3 287 67.2
AUR62010332 Chenopodium quinoa HOM05D004481 ORTHO05D005350 1.6e-110 403.3 284 67.3
Oeu037260.1 Olea europaea HOM05D004481 ORTHO05D005350 1.6e-110 403.3 286 69.9
Lj5g0012751 Lotus japonicus HOM05D004481 ORTHO05D005350 2.7e-110 402.5 292 65.8
Sp7g32060 Schrenkiella parvula HOM05D004481 ORTHO05D005350 3.5e-110 402.1 287 68.6
THA.LOC104819549 Tarenaya hassleriana HOM05D004481 ORTHO05D005350 3.5e-110 402.1 291 67.4
Aqoxy5G01130 Aquilegia oxysepala HOM05D004481 ORTHO05D005350 4.6e-110 401.7 274 70.4
ECA234G2632 Erigeron canadensis HOM05D004481 ORTHO05D005350 4.6e-110 401.7 288 66.7
THA.LOC104807234 Tarenaya hassleriana HOM05D004481 ORTHO05D005350 4.6e-110 401.7 288 69.1
MSTRG.20195 Avicennia marina HOM05D004481 ORTHO05D005350 7.8e-110 401.0 286 68.9
FAN27G3202 Fragaria x ananassa HOM05D004481 ORTHO05D005350 7.8e-110 401.0 286 66.8
Carub.0007s0609 Capsella rubella HOM05D004481 ORTHO05D005350 3.0e-109 399.1 287 66.6
Ca_11058_v3 Cicer arietinum L. HOM05D004481 ORTHO05D005350 3.9e-109 398.7 288 66.0
Lalb_Chr21g0308241 Lupinus albus HOM05D004481 ORTHO05D005350 8.6e-109 397.5 289 67.5
Phvul.007G041700 Phaseolus vulgaris HOM05D004481 ORTHO05D005350 1.1e-108 397.1 286 65.4
PGR142G4205 Punica granatum HOM05D004481 ORTHO05D005350 1.9e-108 396.4 290 65.9
CARHR242510 Cardamine hirsuta HOM05D004481 ORTHO05D005350 2.1e-107 392.9 287 66.6
AL7G17000 Arabidopsis lyrata HOM05D004481 ORTHO05D005350 2.8e-107 392.5 287 65.9
AT4G34270 Arabidopsis thaliana HOM05D004481 ORTHO05D005350 3.6e-107 392.1 291 65.3
VMungo0720G1503 Vigna mungo HOM05D004481 ORTHO05D005350 4.7e-107 391.7 287 64.5
BcaNung04989 Brassica carinata HOM05D004481 ORTHO05D005350 1.8e-106 389.8 287 66.6
Migut.B00402 Erythranthe guttata HOM05D004481 ORTHO05D005350 2.4e-106 389.4 284 66.5
SGA_v2.0_scaffold225G42995 Striga asiatica HOM05D004481 ORTHO05D005350 6.8e-106 387.9 286 65.7
BolC1t00437H Brassica oleracea HOM05D004481 ORTHO05D005350 1.2e-105 387.1 287 65.9
Thhalv10025895m.g Eutrema salsugineum HOM05D004481 ORTHO05D005350 1.2e-105 387.1 288 66.7
A01p04140 Brassica napus HOM05D004481 ORTHO05D005350 2.0e-105 386.3 287 65.9
Sed0023236 Sechium edule HOM05D004481 ORTHO05D005350 2.0e-105 386.3 302 64.9
Aa31LG2G16850 Aethionema arabicum HOM05D004481 ORTHO05D005350 2.2e-104 382.9 291 64.3
C01p04510 Brassica napus HOM05D004481 ORTHO05D005350 2.2e-104 382.9 287 65.5
SalBow6G4388 Salvia bowleyana HOM05D004481 ORTHO05D005350 6.4e-104 381.3 324 61.1
SalBow6G4779 Salvia bowleyana HOM05D004481 ORTHO05D005350 6.4e-104 381.3 324 61.1
Cfa004607 Carpinus fangiana HOM05D004481 ORTHO05D005350 1.4e-103 380.2 255 73.3
BraA01t00403Z Brassica rapa HOM05D004481 ORTHO05D005350 7.8e-102 374.4 303 63.0
EL10Ac9g22252 Beta vulgaris HOM05D004481 ORTHO05D005350 1.7e-101 373.2 292 65.1
Haze_10202 Corylus avellana HOM05D004481 ORTHO05D005350 8.7e-101 370.9 295 64.7
unitig_0.g879 Utricularia gibba HOM05D004481 ORTHO05D005350 4.3e-100 368.6 286 64.0
CiPaw.05G013400 Carya illinoinensis HOM05D004481 ORTHO05D005350 5.6e-100 368.2 233 75.1
DCAR_021976 Daucus carota HOM05D004481 ORTHO05D005350 1.6e-99 366.7 260 68.5
QL11p032653 Quercus lobata HOM05D004481 ORTHO05D005350 1.6e-99 366.7 254 70.1
Hund06305 Selenicereus undatus HOM05D004481 ORTHO05D005350 1.1e-98 364.0 288 64.2
PGSC0003DMG400023263 Solanum tuberosum HOM05D004481 ORTHO05D005350 1.4e-98 363.6 254 68.9
arahy.Tifrunner.gnm1.ann1.PGW4NS Arachis hypogaea HOM05D004481 ORTHO05D005350 4.4e-97 358.6 255 67.5
Zm00001eb214380 Zea mays HOM05D004481 ORTHO05D005350 4.9e-96 355.1 278 61.9
CDE02G3699 Ceratophyllum demersum HOM05D004481 ORTHO05D005350 2.4e-95 352.8 268 63.4
Lsat_1_v5_gn_5_116421 Lactuca sativa HOM05D004481 ORTHO05D005350 3.5e-94 349.0 255 67.5
FAN15G0583 Fragaria x ananassa HOM05D004481 ORTHO05D005350 1.3e-93 347.1 291 60.1
Os03g0760600 Oryza sativa ssp. japonica HOM05D004481 ORTHO05D005350 1.6e-91 340.1 277 61.4
Hma1.2p1_1023F.1_g249000 Hydrangea macrophylla HOM05D004481 ORTHO05D005350 8.1e-91 337.8 208 76.9
ATR0661G316 Amborella trichopoda HOM05D004481 ORTHO05D005350 6.4e-88 328.2 241 64.7
SEGI_10030 Sequoiadendron giganteum HOM05D004481 ORTHO05D005350 4.2e-87 325.5 273 59.7
Ah.01g010900 Amaranthus hybridus HOM05D004481 ORTHO05D005350 1.0e-85 320.9 290 57.9
Actinidia00401 Actinidia chinensis HOM05D004481 ORTHO05D005350 4.8e-83 312.0 228 70.6
SHI05271 Sapria himalayana HOM05D004481 ORTHO05D005350 6.9e-82 308.1 251 61.4
Mapoly0064s0080 Marchantia polymorpha HOM05D004481 ORTHO05D005350 2.0e-81 306.6 291 54.0
FAN20G2321 Fragaria x ananassa HOM05D004481 ORTHO05D005350 4.9e-80 302.0 285 54.4
Pp3c10_18670 Physcomitrium patens HOM05D004481 ORTHO05D005350 1.0e-77 294.3 277 52.7
AUR62039053 Chenopodium quinoa HOM05D004481 ORTHO05D005350 1.3e-75 287.3 237 59.1
SMO361G0327 Selaginella moellendorffii HOM05D004481 ORTHO05D005350 9.0e-74 281.2 279 52.3
AagrBONN_evm.TU.Sc2ySwM_228.2403 Anthoceros agrestis HOM05D004481 ORTHO05D005350 3.8e-72 275.8 237 57.8
Sopen10g019880 Solanum pennellii HOM05D004481 ORTHO05D005350 2.4e-66 256.5 170 69.4
CSS0037652 Camellia sinensis var. sinensis HOM05D004481 ORTHO05D005350 2.5e-63 246.5 152 84.2
HPP92_010143 Vanilla planifolia HOM05D004481 ORTHO05D005350 2.1e-54 216.9 189 58.7
BcaNung04162 Brassica carinata HOM05D004481 ORTHO05D005350 3.3e-52 209.5 299 43.8
MCO13G563 Micromonas commoda HOM05D004481 ORTHO05D005350 3.3e-44 183.0 260 40.8
PRCOL_00000955 Prasinoderma coloniale HOM05D004481 ORTHO05D005350 5.3e-42 175.6 276 38.0
BolC3t17849H Brassica oleracea HOM05D004481 ORTHO05D005350 8.0e-38 161.8 151 56.3
MD00G1108700 Malus domestica HOM05D004481 ORTHO05D005350 1.4e-37 161.0 130 60.0
BcaC01g03137 Brassica carinata HOM05D004481 ORTHO05D005350 2.0e-36 157.1 153 54.9
C03p55700 Brassica napus HOM05D004481 ORTHO05D005350 9.7e-36 154.8 151 55.0
BcaC08g44162 Brassica carinata HOM05D004481 ORTHO05D005350 1.7e-32 144.1 138 55.8
CBR_g36716 Chara braunii HOM05D004481 ORTHO05D005350 4.4e-28 129.4 109 54.1
Cre17.g734150 Chlamydomonas reinhardtii HOM05D004481 ORTHO05D005350 7.5e-28 128.6 366 27.3
Cfa024874 Carpinus fangiana HOM05D004481 ORTHO05D005350 1.1e-26 124.8 269 31.2
BcaNung04988 Brassica carinata HOM05D004481 ORTHO05D005350 2.4e-26 123.6 94 66.0
Peaxi162Scf00003g02548 Petunia axillaris HOM05D004481 ORTHO05D005350 1.6e-25 120.9 170 40.6
Actinidia34390 Actinidia chinensis HOM05D004481 ORTHO05D005350 1.0e-24 118.2 64 84.4
Sopen01g049670 Solanum pennellii HOM05D004481 ORTHO05D005350 6.8e-21 105.5 105 58.1
Sopen01g049660 Solanum pennellii HOM05D004481 ORTHO05D005350 8.9e-21 105.1 82 65.9
RcHm_v2.0_Chr6g0257521 Rosa chinensis HOM05D004481 ORTHO05D005350 2.2e-19 100.5 66 66.7
Hund00159 Selenicereus undatus HOM05D004481 ORTHO05D005350 3.2e-18 96.7 99 50.5
CSS0049178 Camellia sinensis var. sinensis HOM05D002228 ORTHO05D002347 9.2e-18 95.1 67 68.7
CSS0039068 Camellia sinensis var. sinensis HOM05D002228 ORTHO05D002347 1.2e-17 94.7 65 70.8
MD00G1108800 Malus domestica HOM05D004481 ORTHO05D005350 4.3e-15 86.3 144 40.3
GSVIVG01003244001 Vitis vinifera HOM05D004481 ORTHO05D005350 1.2e-12 78.2 69 56.5
GSVIVG01030751001 Vitis vinifera HOM05D004481 ORTHO05D005350 1.2e-12 78.2 69 56.5
GSVIVG01003443001 Vitis vinifera HOM05D004481 ORTHO05D005350 2.0e-12 77.4 45 75.6
GSVIVG01030757001 Vitis vinifera HOM05D004481 ORTHO05D005350 5.8e-12 75.9 69 53.6
Lsat_1_v5_gn_5_116621 Lactuca sativa HOM05D000552 ORTHO05D000469 1.3e-11 74.7 40 80.0
PRCOL_00004768 Prasinoderma coloniale HOM05D004481 ORTHO05D005350 7.0e-10 68.9 181 29.3
Solyc01g107420.2 Solanum lycopersicum HOM05D004481 ORTHO05D005350 2.0e-09 67.4 56 58.9
Actinidia34391 Actinidia chinensis HOM05D004481 ORTHO05D005350 1.0e-08 65.1 48 62.5
Atru.chr3.1909 Acer truncatum HOM05D004481 ORTHO05D005350 3.0e-08 63.5 72 50.0
Atru.chr12.2105 Acer truncatum HOM05D004481 ORTHO05D005350 8.6e-08 62.0 69 49.3
Cfa005651 Carpinus fangiana HOM05D004481 ORTHO05D005350 8.6e-08 62.0 60 55.0
Atru.chr13.2259 Acer truncatum HOM05D004481 ORTHO05D005350 1.9e-07 60.8 65 52.3
Atru.chr7.688 Acer truncatum HOM05D004481 ORTHO05D005350 1.9e-07 60.8 65 52.3
VMungo0251G0056 Vigna mungo HOM05D005531 ORTHO05D006332 7.3e-07 58.9 122 36.1


User provided reference genes

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