Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0003921 Camellia sinensis var. sinensis HOM05D008304 ORTHO05D004056 2.5e-38 161.8 89 100.0
Actinidia22217 Actinidia chinensis HOM05D008304 ORTHO05D004056 4.4e-19 97.8 90 72.2
QL02p027330 Quercus lobata HOM05D008304 ORTHO05D004056 2.3e-15 85.5 88 63.6
CiPaw.11G110100 Carya illinoinensis HOM05D008304 ORTHO05D004056 5.0e-15 84.3 93 66.7
Cfa011898 Carpinus fangiana HOM05D008304 ORTHO05D004056 1.9e-14 82.4 89 66.3
vmacro11488 Vaccinium macrocarpon HOM05D008304 ORTHO05D004056 1.9e-14 82.4 92 62.0
Haze_09200 Corylus avellana HOM05D008304 ORTHO05D004056 3.3e-14 81.6 89 66.3
Dinv12896 Davidia involucrata HOM05D008304 ORTHO05D004056 1.2e-13 79.7 90 63.3
GSVIVG01019681001 Vitis vinifera HOM05D008304 ORTHO05D004056 1.2e-13 79.7 89 61.8
Nitab4.5_0002520g0050 Nicotiana tabacum HOM05D008304 ORTHO05D004056 1.0e-12 76.6 89 57.3
Manes.01G055200 Manihot esculenta HOM05D008304 ORTHO05D004056 1.4e-12 76.3 89 59.6
Oeu042857.1 Olea europaea HOM05D008304 ORTHO05D004056 4.0e-12 74.7 89 55.1
ClCG01G001410 Citrullus lanatus HOM05D008304 ORTHO05D004056 6.8e-12 73.9 89 57.3
Dinv18759 Davidia involucrata HOM05D008304 ORTHO05D004056 8.9e-12 73.6 97 56.7
TAR629G3464 Trochodendron aralioides HOM05D008304 ORTHO05D004056 1.2e-11 73.2 89 60.7
Sed0018210 Sechium edule HOM05D008304 ORTHO05D004056 1.5e-11 72.8 89 59.6
Potri.001G449633 Populus trichocarpa HOM05D008304 ORTHO05D004056 2.6e-11 72.0 89 55.1
Sabra16G0303400 Salix brachista HOM05D008304 ORTHO05D004056 5.7e-11 70.9 89 56.2
Thecc.03G217700 Theobroma cacao HOM05D008304 ORTHO05D004056 9.8e-11 70.1 89 59.6
Cpa.g.sc37.98 Carica papaya HOM05D008304 ORTHO05D004056 1.7e-10 69.3 89 57.3
CANSAT21G0162 Cannabis sativa HOM05D008304 ORTHO05D004056 3.7e-10 68.2 89 55.1
Oeu015753.1 Olea europaea HOM05D008304 ORTHO05D004056 3.7e-10 68.2 89 51.7
COL.COLO4_10829 Corchorus olitorius HOM05D008304 ORTHO05D004056 4.9e-10 67.8 89 56.2
Migut.E00724 Erythranthe guttata HOM05D008304 ORTHO05D004056 1.1e-09 66.6 89 51.7
Gohir.A12G241800 Gossypium hirsutum HOM05D008304 ORTHO05D004056 1.1e-09 66.6 89 53.9
Cc08_g16980 Coffea canephora HOM05D008304 ORTHO05D004056 1.8e-09 65.9 92 55.4
FvH4_5g10570 Fragaria vesca HOM05D008304 ORTHO05D004056 2.4e-09 65.5 89 51.7
FAN04G0709 Fragaria x ananassa HOM05D008304 ORTHO05D012179 2.4e-09 65.5 89 51.7
FAN13G2184 Fragaria x ananassa HOM05D008304 ORTHO05D012179 2.4e-09 65.5 89 51.7
FAN18G4101 Fragaria x ananassa HOM05D008304 ORTHO05D012179 2.4e-09 65.5 89 51.7
Gorai.008G260200 Gossypium raimondii HOM05D008304 ORTHO05D004056 2.4e-09 65.5 89 52.8
CDE08G1618 Ceratophyllum demersum HOM05D005953 ORTHO05D004056 3.1e-09 65.1 89 51.7
CDE04G3503 Ceratophyllum demersum HOM05D008304 ORTHO05D004056 4.1e-09 64.7 89 51.7
Ciclev10023139m.g Citrus clementina HOM05D008304 ORTHO05D004056 5.4e-09 64.3 89 55.1
Duzib205G1739 Durio zibethinus HOM05D008304 ORTHO05D004056 5.4e-09 64.3 89 55.1
Gohir.D09G182600 Gossypium hirsutum HOM05D008304 ORTHO05D004056 7.0e-09 63.9 89 51.7
Gorai.006G204900 Gossypium raimondii HOM05D008304 ORTHO05D004056 7.0e-09 63.9 89 51.7
MD06G1122200 Malus domestica HOM05D008304 ORTHO05D004056 9.2e-09 63.5 89 52.8
Atru.chr9.1863 Acer truncatum HOM05D008304 ORTHO05D004056 1.2e-08 63.2 90 54.4
Gohir.D12G243000 Gossypium hirsutum HOM05D008304 ORTHO05D004056 1.2e-08 63.2 89 51.7
MBI06_g06482_MAGBIO Magnolia biondii HOM05D005953 ORTHO05D004056 1.2e-08 63.2 89 51.7
Gohir.A09G187800 Gossypium hirsutum HOM05D008304 ORTHO05D004056 2.7e-08 62.0 89 50.6
Peaxi162Scf00074g00131 Petunia axillaris HOM05D008304 ORTHO05D004056 2.7e-08 62.0 90 50.0
CsaV3_5G001550 Cucumis sativus L. HOM05D008304 ORTHO05D004056 4.5e-08 61.2 85 54.1
MD14G1138600 Malus domestica HOM05D008304 ORTHO05D004056 5.9e-08 60.8 89 51.7
Sabra11G0136700 Salix brachista HOM05D008304 ORTHO05D004056 5.9e-08 60.8 89 51.7
Sabra11G0148600 Salix brachista HOM05D008304 ORTHO05D004056 5.9e-08 60.8 89 51.7
PGR042G2542 Punica granatum HOM05D008304 ORTHO05D004056 7.8e-08 60.5 90 48.9
Prupe.5G132900 Prunus persica HOM05D008304 ORTHO05D004056 1.7e-07 59.3 89 50.6
Eucgr.D01660 Eucalyptus grandis HOM05D008304 ORTHO05D004056 2.3e-07 58.9 83 48.2
Potri.011G151900 Populus trichocarpa HOM05D008304 ORTHO05D004056 3.9e-07 58.2 89 50.6
MBI12_g20132_MAGBIO Magnolia biondii HOM05D008304 ORTHO05D004056 1.9e-06 55.8 92 47.8
Thecc.02G179300 Theobroma cacao HOM05D005953 ORTHO05D004056 2.5e-06 55.5 89 48.3
Nn1g06570 Nelumbo nucifera HOM05D005953 ORTHO05D004056 9.5e-06 53.5 89 49.4
TAR626G0584 Trochodendron aralioides HOM05D005953 ORTHO05D004056 9.5e-06 53.5 89 47.2


User provided reference genes

Program Settings