Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0003915 Camellia sinensis var. sinensis HOM05D000384 ORTHO05D006260 2.3e-73 278.9 148 100.0
CSS0025710 Camellia sinensis var. sinensis HOM05D000384 ORTHO05D006260 1.5e-72 276.2 148 99.3
CSS0048526 Camellia sinensis var. sinensis HOM05D000384 ORTHO05D006260 2.6e-72 275.4 148 98.6
Actinidia40142 Actinidia chinensis HOM05D000384 ORTHO05D006260 5.2e-65 251.1 148 88.5
Rhsim04G0201900 Rhododendron simsii HOM05D000384 ORTHO05D006260 1.7e-63 246.1 148 86.5
Cc03_g03830 Coffea canephora HOM05D000384 ORTHO05D006260 5.3e-62 241.1 148 83.8
Dinv44537 Davidia involucrata HOM05D000384 ORTHO05D000468 7.0e-62 240.7 145 86.2
GSVIVG01017982001 Vitis vinifera HOM05D000384 ORTHO05D006260 2.9e-60 235.3 149 83.2
Haze_00893 Corylus avellana HOM05D000384 ORTHO05D006260 3.8e-60 235.0 149 82.6
DCAR_027219 Daucus carota HOM05D000384 ORTHO05D006260 8.5e-60 233.8 147 84.4
QL06p002227 Quercus lobata HOM05D000384 ORTHO05D006260 8.5e-60 233.8 148 82.4
TWI09G1519 Tripterygium wilfordii HOM05D000384 ORTHO05D006260 8.5e-60 233.8 149 82.6
CAN.G1280.23 Capsicum annuum HOM05D000384 ORTHO05D006260 1.1e-59 233.4 146 83.6
CAN.G136.5 Capsicum annuum HOM05D000384 ORTHO05D006260 1.1e-59 233.4 142 84.5
Sopen06g018540 Solanum pennellii HOM05D000384 ORTHO05D006260 1.1e-59 233.4 142 84.5
arahy.Tifrunner.gnm1.ann1.JHWM2T Arachis hypogaea HOM05D000384 ORTHO05D006260 1.5e-59 233.0 149 81.9
arahy.Tifrunner.gnm1.ann1.U3DZXE Arachis hypogaea HOM05D000384 ORTHO05D006260 1.5e-59 233.0 149 81.9
Lj3E734T1 Lonicera japonica HOM05D000384 ORTHO05D006260 1.5e-59 233.0 148 83.1
Nitab4.5_0007368g0020 Nicotiana tabacum HOM05D000384 ORTHO05D006260 1.9e-59 232.6 143 84.6
Cfa015651 Carpinus fangiana HOM05D000384 ORTHO05D006260 2.5e-59 232.3 150 82.0
DCAR_024164 Daucus carota HOM05D000384 ORTHO05D006260 4.2e-59 231.5 147 83.7
Nitab4.5_0007474g0030 Nicotiana tabacum HOM05D000384 ORTHO05D006260 4.2e-59 231.5 143 84.6
Oeu031225.1 Olea europaea HOM05D000384 ORTHO05D006260 4.2e-59 231.5 146 83.6
Oeu031229.1 Olea europaea HOM05D000384 ORTHO05D006260 4.2e-59 231.5 146 83.6
PGSC0003DMG400016332 Solanum tuberosum HOM05D000384 ORTHO05D006260 5.5e-59 231.1 143 84.6
arahy.Tifrunner.gnm1.ann1.T2NEZJ Arachis hypogaea HOM05D000384 ORTHO05D006260 7.2e-59 230.7 149 81.2
Phvul.008G161600 Phaseolus vulgaris HOM05D000384 ORTHO05D006260 7.2e-59 230.7 139 86.3
CiPaw.02G097700 Carya illinoinensis HOM05D000384 ORTHO05D006260 9.4e-59 230.3 149 81.2
TAR636G3061 Trochodendron aralioides HOM05D000384 ORTHO05D006260 9.4e-59 230.3 149 82.6
Glyma.13G124100 Glycine max HOM05D000384 ORTHO05D006260 1.2e-58 229.9 139 86.3
Glyma.06G316000 Glycine max HOM05D000384 ORTHO05D006260 1.6e-58 229.6 139 85.6
Potri.008G153900 Populus trichocarpa HOM05D000384 ORTHO05D006260 1.6e-58 229.6 145 82.8
Lj3g0015206 Lotus japonicus HOM05D000384 ORTHO05D006260 2.7e-58 228.8 139 84.9
Lalb_Chr19g0132471 Lupinus albus HOM05D000384 ORTHO05D006260 2.7e-58 228.8 149 79.2
Medtr3g007250 Medicago truncatula HOM05D000384 ORTHO05D006260 2.7e-58 228.8 149 80.5
Ciclev10006154m.g Citrus clementina HOM05D000384 ORTHO05D006260 3.6e-58 228.4 149 80.5
Peaxi162Scf00579g00001 Petunia axillaris HOM05D000384 ORTHO05D006260 3.6e-58 228.4 143 83.2
TPR.G25531 Trifolium pratense HOM05D000384 ORTHO05D006260 3.6e-58 228.4 149 80.5
AUR62019660 Chenopodium quinoa HOM05D000384 ORTHO05D006260 4.7e-58 228.0 147 78.2
Glyma.05G087300 Glycine max HOM05D000384 ORTHO05D006260 4.7e-58 228.0 139 85.6
MSTRG.24739 Avicennia marina HOM05D000384 ORTHO05D006260 6.1e-58 227.6 146 81.5
MBI11_g07539_MAGBIO Magnolia biondii HOM05D000384 ORTHO05D006260 8.0e-58 227.3 139 84.2
Sc13g0004430 Simmondsia chinensis HOM05D000384 ORTHO05D006260 8.0e-58 227.3 147 79.6
Atru.chr4.720 Acer truncatum HOM05D000384 ORTHO05D006260 1.0e-57 226.9 149 79.9
Cpa.g.sc58.101 Carica papaya HOM05D000384 ORTHO05D006260 1.0e-57 226.9 148 81.1
Duzib128G1753 Durio zibethinus HOM05D000384 ORTHO05D006260 1.0e-57 226.9 143 81.8
Psat0s3755g0120 Pisum sativum HOM05D000384 ORTHO05D006260 1.0e-57 226.9 149 79.9
Sc19g0004110 Simmondsia chinensis HOM05D000384 ORTHO05D006260 1.0e-57 226.9 148 79.1
arahy.Tifrunner.gnm1.ann1.K8JXLT Arachis hypogaea HOM05D000384 ORTHO05D006260 1.4e-57 226.5 148 81.1
CANSAT64G0565 Cannabis sativa HOM05D000384 ORTHO05D006260 1.4e-57 226.5 146 80.1
CsaV3_5G038350 Cucumis sativus L. HOM05D000384 ORTHO05D006260 1.8e-57 226.1 146 80.1
Prupe.1G014300 Prunus persica HOM05D000384 ORTHO05D006260 1.8e-57 226.1 148 81.1
Duzib114G0643 Durio zibethinus HOM05D000384 ORTHO05D006260 3.0e-57 225.3 143 82.5
Nn3g18529 Nelumbo nucifera HOM05D000384 ORTHO05D006260 3.0e-57 225.3 144 81.9
Migut.N00188 Erythranthe guttata HOM05D000384 ORTHO05D006260 4.0e-57 224.9 141 82.3
Hma1.2p1_0745F.1_g212050 Hydrangea macrophylla HOM05D000384 ORTHO05D006260 4.0e-57 224.9 145 80.7
Eucgr.H03463 Eucalyptus grandis HOM05D000384 ORTHO05D006260 5.2e-57 224.6 134 86.6
VMungo0720G1921 Vigna mungo HOM05D000384 ORTHO05D006260 5.2e-57 224.6 137 83.9
ClCG05G005160 Citrullus lanatus HOM05D000384 ORTHO05D006260 6.7e-57 224.2 146 79.5
Sabra08G0117400 Salix brachista HOM05D000384 ORTHO05D006260 6.7e-57 224.2 140 82.9
CiPaw.01G166600 Carya illinoinensis HOM05D000384 ORTHO05D006260 8.8e-57 223.8 149 79.2
Ca_14031_v3 Cicer arietinum L. HOM05D000384 ORTHO05D006260 8.8e-57 223.8 149 78.5
COL.COLO4_10907 Corchorus olitorius HOM05D000384 ORTHO05D006260 8.8e-57 223.8 145 80.0
Manes.03G178300 Manihot esculenta HOM05D000384 ORTHO05D006260 8.8e-57 223.8 144 80.6
RcHm_v2.0_Chr1g0362551 Rosa chinensis HOM05D000384 ORTHO05D006260 1.5e-56 223.0 145 79.3
RcHm_v2.0_Chr4g0387021 Rosa chinensis HOM05D000384 ORTHO05D006260 1.5e-56 223.0 145 79.3
EL10Ac4g08427 Beta vulgaris HOM05D000384 ORTHO05D006260 2.0e-56 222.6 148 77.0
MELO3C022017.2 Cucumis melo HOM05D000384 ORTHO05D006260 2.0e-56 222.6 146 78.8
MD16G1194400 Malus domestica HOM05D000384 ORTHO05D006260 2.0e-56 222.6 146 80.1
Thecc.10G059100 Theobroma cacao HOM05D000384 ORTHO05D006260 2.0e-56 222.6 143 81.1
Potri.001G240200 Populus trichocarpa HOM05D000384 ORTHO05D006260 2.6e-56 222.2 145 80.0
Hund25029 Selenicereus undatus HOM05D000384 ORTHO05D006260 3.3e-56 221.9 148 77.7
AUR62013951 Chenopodium quinoa HOM05D000384 ORTHO05D006260 4.4e-56 221.5 141 79.4
Atru.chr4.2459 Acer truncatum HOM05D000384 ORTHO05D006260 7.5e-56 220.7 148 79.7
Gohir.A10G210600 Gossypium hirsutum HOM05D000384 ORTHO05D006260 7.5e-56 220.7 145 79.3
Gohir.D10G218900 Gossypium hirsutum HOM05D000384 ORTHO05D006260 7.5e-56 220.7 145 79.3
Gorai.011G245600 Gossypium raimondii HOM05D000384 ORTHO05D006260 7.5e-56 220.7 145 79.3
Sabra16G0144900 Salix brachista HOM05D000384 ORTHO05D006260 7.5e-56 220.7 147 78.2
SGA_v2.0_scaffold522G52709 Striga asiatica HOM05D000384 ORTHO05D006260 1.3e-55 219.9 146 78.8
FAN07G0857 Fragaria x ananassa HOM05D000384 ORTHO05D006260 1.7e-55 219.5 145 77.9
Sed0018578 Sechium edule HOM05D000384 ORTHO05D006260 2.8e-55 218.8 148 76.4
FAN17G0123 Fragaria x ananassa HOM05D000384 ORTHO05D006260 3.7e-55 218.4 145 77.9
RcHm_v2.0_Chr4g0416141 Rosa chinensis HOM05D000384 ORTHO05D006260 4.8e-55 218.0 145 77.9
Aqoxy1G01533 Aquilegia oxysepala HOM05D000384 ORTHO05D006260 1.1e-54 216.9 143 79.0
Aqoxy5G00465 Aquilegia oxysepala HOM05D000384 ORTHO05D006260 1.1e-54 216.9 143 79.0
FAN22G1586 Fragaria x ananassa HOM05D000384 ORTHO05D006260 1.1e-54 216.9 145 76.6
FvH4_4g15650 Fragaria vesca HOM05D000384 ORTHO05D006260 2.4e-54 215.7 145 77.2
FAN12G1863 Fragaria x ananassa HOM05D000384 ORTHO05D006260 2.4e-54 215.7 145 77.2
SalBow3G1001 Salvia bowleyana HOM05D000384 ORTHO05D006260 4.1e-54 214.9 134 82.1
PSO210G4801 Papaver somniferum HOM05D000384 ORTHO05D006260 5.3e-54 214.5 140 80.0
PSO832G3877 Papaver somniferum HOM05D000384 ORTHO05D006260 7.0e-54 214.2 140 80.0
TWI53G0398 Tripterygium wilfordii HOM05D000384 ORTHO05D006260 2.7e-53 212.2 138 81.2
ECA247G4089 Erigeron canadensis HOM05D000384 ORTHO05D006260 5.9e-53 211.1 144 77.1
Os12g0485800 Oryza sativa ssp. japonica HOM05D000384 ORTHO05D006260 1.0e-52 210.3 146 75.3
Oeu050282.1 Olea europaea HOM05D000384 ORTHO05D006260 1.3e-52 209.9 146 76.0
PGR004G2612 Punica granatum HOM05D000384 ORTHO05D006260 1.3e-52 209.9 145 75.9
HanXRQChr08g0229211 Helianthus annuus HOM05D000384 ORTHO05D006260 1.7e-52 209.5 144 77.1
Solyc06g053460.3 Solanum lycopersicum HOM05D000384 ORTHO05D006260 2.2e-52 209.1 124 87.1
unitig_699.g19994 Utricularia gibba HOM05D000384 ORTHO05D006260 2.9e-52 208.8 141 79.4
Zm00001eb114150 Zea mays HOM05D000384 ORTHO05D006260 2.9e-52 208.8 145 73.8
Zm00001eb415970 Zea mays HOM05D000384 ORTHO05D006260 1.1e-51 206.8 145 71.7
Lsat_1_v5_gn_9_18461 Lactuca sativa HOM05D000384 ORTHO05D006260 3.2e-51 205.3 134 80.6
THA.LOC104803028 Tarenaya hassleriana HOM05D000384 ORTHO05D006260 2.7e-50 202.2 149 69.8
Os11g0568500 Oryza sativa ssp. japonica HOM05D000384 ORTHO05D006260 1.0e-49 200.3 146 71.9
THA.LOC104822267 Tarenaya hassleriana HOM05D000384 ORTHO05D006260 1.8e-49 199.5 149 69.1
Aa31LG8G9040 Aethionema arabicum HOM05D000384 ORTHO05D006260 5.2e-49 198.0 148 68.2
SEGI_35673 Sequoiadendron giganteum HOM05D000384 ORTHO05D006260 8.8e-49 197.2 144 71.5
CARHR098380 Cardamine hirsuta HOM05D000384 ORTHO05D006260 6.3e-47 191.0 140 70.0
Thhalv10021707m.g Eutrema salsugineum HOM05D000384 ORTHO05D006260 3.1e-46 188.7 140 67.1
C03p52530 Brassica napus HOM05D000384 ORTHO05D006260 4.1e-46 188.3 143 67.8
ATR0083G069 Amborella trichopoda HOM05D000384 ORTHO05D006260 7.0e-46 187.6 139 69.8
A05p26280 Brassica napus HOM05D000384 ORTHO05D006260 7.0e-46 187.6 139 69.1
BraA03t13424Z Brassica rapa HOM05D000384 ORTHO05D006260 7.0e-46 187.6 144 67.4
A03p42770 Brassica napus HOM05D000384 ORTHO05D006260 9.1e-46 187.2 145 66.9
BcaC01g03444 Brassica carinata HOM05D000384 ORTHO05D006260 1.2e-45 186.8 143 67.1
BolC3t17522H Brassica oleracea HOM05D000384 ORTHO05D006260 1.2e-45 186.8 143 67.1
BraA05t21503Z Brassica rapa HOM05D000384 ORTHO05D006260 1.6e-45 186.4 137 69.3
BcaC05g28063 Brassica carinata HOM05D000384 ORTHO05D006260 3.5e-45 185.3 140 68.6
C05p40760 Brassica napus HOM05D000384 ORTHO05D006260 3.5e-45 185.3 140 68.6
BolC5t32821H Brassica oleracea HOM05D000384 ORTHO05D006260 3.5e-45 185.3 140 68.6
BcaB04g19201 Brassica carinata HOM05D000384 ORTHO05D006260 7.7e-45 184.1 138 67.4
HanXRQChr04g0103741 Helianthus annuus HOM05D000384 ORTHO05D006260 1.3e-44 183.3 116 82.8
TAR365G0396 Trochodendron aralioides HOM05D000384 ORTHO05D006260 1.3e-44 183.3 120 79.2
AT3G22480 Arabidopsis thaliana HOM05D000384 ORTHO05D006260 1.7e-44 183.0 140 66.4
BcaB06g26358 Brassica carinata HOM05D000384 ORTHO05D006260 2.9e-44 182.2 136 68.4
AL3G36790 Arabidopsis lyrata HOM05D000384 ORTHO05D006260 1.5e-43 179.9 140 67.9
Ah.04g163960 Amaranthus hybridus HOM05D000384 ORTHO05D006260 3.3e-43 178.7 144 66.0
Carub.0003s2264 Capsella rubella HOM05D000384 ORTHO05D006260 5.5e-43 177.9 140 67.1
C05p40680 Brassica napus HOM05D000384 ORTHO05D006260 6.1e-42 174.5 137 67.9
BolC5t32807H Brassica oleracea HOM05D000384 ORTHO05D006260 6.1e-42 174.5 137 67.9
AagrBONN_evm.TU.Sc2ySwM_344.1360 Anthoceros agrestis HOM05D000384 ORTHO05D006260 3.0e-41 172.2 145 60.7
Mapoly0049s0105 Marchantia polymorpha HOM05D000384 ORTHO05D006260 4.0e-41 171.8 144 63.9
SMO169G0080 Selaginella moellendorffii HOM05D000384 ORTHO05D006260 5.7e-40 167.9 143 61.5
Sp3g20250 Schrenkiella parvula HOM05D000384 ORTHO05D006260 1.1e-38 163.7 140 60.7
CBR_g42063 Chara braunii HOM05D000384 ORTHO05D006260 7.8e-37 157.5 138 59.4
Pp3c23_10300 Physcomitrium patens HOM05D000384 ORTHO05D006260 6.1e-34 147.9 133 58.6
HPP92_018608 Vanilla planifolia HOM05D000384 ORTHO05D006260 5.2e-33 144.8 132 59.1
AagrBONN_evm.TU.Sc2ySwM_228.3583 Anthoceros agrestis HOM05D000384 ORTHO05D006260 3.7e-31 138.7 115 58.3
Pp3c24_3120 Physcomitrium patens HOM05D000384 ORTHO05D006260 1.6e-29 133.3 138 55.1
HPP92_018610 Vanilla planifolia HOM05D000384 ORTHO05D006260 7.5e-24 114.4 90 65.6
Hma1.2p1_0602F.1_g187390 Hydrangea macrophylla HOM05D000384 ORTHO05D006260 1.1e-22 110.5 109 58.7
MCO05G108 Micromonas commoda HOM05D000384 ORTHO05D006260 4.1e-22 108.6 135 42.2
BcaC05g28047 Brassica carinata HOM05D000384 ORTHO05D006260 1.2e-21 107.1 97 59.8
Cre07.g342250 Chlamydomonas reinhardtii HOM05D000384 ORTHO05D006260 1.0e-20 104.0 138 43.5
PRCOL_00004688 Prasinoderma coloniale HOM05D000384 ORTHO05D006260 2.4e-14 82.8 86 48.8
CDE09G0159 Ceratophyllum demersum HOM05D000384 ORTHO05D006260 1.6e-13 80.1 46 82.6


User provided reference genes

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