Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0003869 Camellia sinensis var. sinensis HOM05D005225 ORTHO05D006830 4.8e-296 1020.4 508 100.0
Dinv34052 Davidia involucrata HOM05D005225 ORTHO05D006830 3.5e-246 854.7 507 82.4
Rhsim09G0126000 Rhododendron simsii HOM05D005225 ORTHO05D006830 5.8e-241 837.4 488 83.6
vmacro01311 Vaccinium macrocarpon HOM05D005225 ORTHO05D006830 5.8e-241 837.4 484 85.1
CSS0031076 Camellia sinensis var. sinensis HOM05D005225 ORTHO05D006830 3.7e-240 834.7 475 90.3
RcHm_v2.0_Chr7g0212391 Rosa chinensis HOM05D005225 ORTHO05D006830 8.4e-232 807.0 507 76.5
Potri.008G097400 Populus trichocarpa HOM05D005225 ORTHO05D006830 1.4e-231 806.2 505 77.0
Cc11_g11810 Coffea canephora HOM05D005225 ORTHO05D006830 2.4e-231 805.4 504 76.2
Sabra08G0073600 Salix brachista HOM05D005225 ORTHO05D006830 9.2e-231 803.5 505 76.6
Ciclev10031260m.g Citrus clementina HOM05D005225 ORTHO05D006830 6.0e-230 800.8 507 76.7
Cfa008863 Carpinus fangiana HOM05D005225 ORTHO05D006830 7.8e-230 800.4 508 77.0
Atru.chr11.1603 Acer truncatum HOM05D005225 ORTHO05D006830 1.1e-228 796.6 508 75.8
Thecc.02G327800 Theobroma cacao HOM05D005225 ORTHO05D006830 1.9e-228 795.8 506 76.1
FvH4_4g10620 Fragaria vesca HOM05D005225 ORTHO05D006830 4.3e-228 794.7 507 75.1
FAN12G0824 Fragaria x ananassa HOM05D005225 ORTHO05D006830 4.3e-228 794.7 507 75.3
FAN12G2267 Fragaria x ananassa HOM05D005225 ORTHO05D006830 6.2e-227 790.8 507 75.1
Hma1.2p1_0051F.1_g029440 Hydrangea macrophylla HOM05D005225 ORTHO05D006830 6.2e-227 790.8 509 76.2
QL03p073750 Quercus lobata HOM05D005225 ORTHO05D006830 1.2e-225 786.6 508 76.0
Haze_11886 Corylus avellana HOM05D005225 ORTHO05D006830 3.4e-225 785.0 481 78.6
Cpa.g.sc1.153 Carica papaya HOM05D005225 ORTHO05D006830 9.9e-225 783.5 527 72.5
Duzib251G0330 Durio zibethinus HOM05D005225 ORTHO05D006830 6.4e-224 780.8 508 74.6
Prupe.1G566200 Prunus persica HOM05D005225 ORTHO05D006830 1.4e-223 779.6 508 74.4
MD16G1281400 Malus domestica HOM05D005225 ORTHO05D006830 1.9e-223 779.2 484 77.7
Eucgr.F03034 Eucalyptus grandis HOM05D005225 ORTHO05D006830 1.6e-222 776.2 513 74.7
COL.COLO4_27858 Corchorus olitorius HOM05D005225 ORTHO05D006830 2.1e-222 775.8 482 76.1
QL02p092646 Quercus lobata HOM05D005225 ORTHO05D006830 3.5e-222 775.0 508 74.8
Sopen05g006880 Solanum pennellii HOM05D005225 ORTHO05D006830 5.6e-220 767.7 508 74.0
CANSAT80G1664 Cannabis sativa HOM05D005225 ORTHO05D006830 9.6e-220 766.9 505 71.9
CAN.G707.21 Capsicum annuum HOM05D005225 ORTHO05D006830 1.3e-219 766.5 508 73.4
Manes.10G001000 Manihot esculenta HOM05D005225 ORTHO05D006830 2.8e-219 765.4 507 72.8
Peaxi162Scf00175g00052 Petunia axillaris HOM05D005225 ORTHO05D006830 2.8e-219 765.4 478 76.6
Hund25165 Selenicereus undatus HOM05D005225 ORTHO05D006830 3.6e-219 765.0 509 72.7
TWI75G0045 Tripterygium wilfordii HOM05D005225 ORTHO05D006830 6.2e-219 764.2 507 72.4
TWI79G0826 Tripterygium wilfordii HOM05D005225 ORTHO05D006830 8.1e-219 763.8 508 72.4
PSO017G1582 Papaver somniferum HOM05D005225 ORTHO05D006830 1.4e-218 763.1 507 73.8
PGSC0003DMG400028362 Solanum tuberosum HOM05D005225 ORTHO05D006830 3.1e-218 761.9 508 73.2
DCAR_004043 Daucus carota HOM05D005225 ORTHO05D006830 4.0e-218 761.5 466 78.5
Lj3P1029T28 Lonicera japonica HOM05D005225 ORTHO05D006830 4.0e-218 761.5 477 76.9
HanXRQChr12g0375111 Helianthus annuus HOM05D005225 ORTHO05D006830 1.2e-217 760.0 506 73.1
GSVIVG01012238001 Vitis vinifera HOM05D005225 ORTHO05D006830 1.2e-217 760.0 507 74.0
Gorai.008G176100 Gossypium raimondii HOM05D005225 ORTHO05D006830 2.6e-217 758.8 508 72.8
Lalb_Chr04g0255551 Lupinus albus HOM05D005225 ORTHO05D006830 1.4e-215 753.1 482 75.1
Psat2g131720 Pisum sativum HOM05D005225 ORTHO05D006830 7.1e-215 750.7 504 72.8
Ah.03g138790 Amaranthus hybridus HOM05D005225 ORTHO05D006830 4.6e-214 748.0 503 71.2
MSTRG.7736 Avicennia marina HOM05D005225 ORTHO05D006830 4.6e-214 748.0 507 71.8
PGR102G0586 Punica granatum HOM05D005225 ORTHO05D006830 6.0e-214 747.7 507 71.6
ECA246G3793 Erigeron canadensis HOM05D005225 ORTHO05D006830 1.3e-213 746.5 506 71.7
VMungo1215G0332 Vigna mungo HOM05D005225 ORTHO05D006830 1.8e-213 746.1 481 75.1
Nn8g41224 Nelumbo nucifera HOM05D005225 ORTHO05D006830 2.3e-213 745.7 478 74.1
AUR62003082 Chenopodium quinoa HOM05D005225 ORTHO05D006830 3.0e-213 745.3 506 70.0
arahy.Tifrunner.gnm1.ann1.BYWX90 Arachis hypogaea HOM05D005225 ORTHO05D006830 8.7e-213 743.8 481 73.6
arahy.Tifrunner.gnm1.ann1.W47LMS Arachis hypogaea HOM05D005225 ORTHO05D006830 8.7e-213 743.8 481 73.6
Glyma.02G120400 Glycine max HOM05D005225 ORTHO05D006830 8.7e-213 743.8 484 74.6
SalBow2G3373 Salvia bowleyana HOM05D005225 ORTHO05D006830 1.1e-212 743.4 507 71.0
Sed0018680 Sechium edule HOM05D005225 ORTHO05D006830 1.5e-212 743.0 493 71.2
TPR.G23155 Trifolium pratense HOM05D005225 ORTHO05D006830 3.3e-212 741.9 512 71.5
MELO3C020077.2 Cucumis melo HOM05D005225 ORTHO05D006830 4.3e-212 741.5 509 70.3
Ca_05000_v3 Cicer arietinum L. HOM05D005225 ORTHO05D006830 7.4e-212 740.7 481 73.0
Sc04g0007480 Simmondsia chinensis HOM05D005225 ORTHO05D006830 7.4e-212 740.7 508 71.7
TPR.G23738 Trifolium pratense HOM05D005225 ORTHO05D006830 7.4e-212 740.7 481 74.2
CsaV3_5G008630 Cucumis sativus L. HOM05D005225 ORTHO05D006830 1.6e-211 739.6 509 69.5
arahy.Tifrunner.gnm1.ann1.BAL663 Arachis hypogaea HOM05D005225 ORTHO05D006830 2.1e-211 739.2 481 73.2
Lsat_1_v5_gn_3_53701 Lactuca sativa HOM05D005225 ORTHO05D006830 2.8e-211 738.8 504 70.4
MBI16_g03095_MAGBIO Magnolia biondii HOM05D005225 ORTHO05D006830 2.8e-211 738.8 510 70.6
arahy.Tifrunner.gnm1.ann1.1IY8V2 Arachis hypogaea HOM05D005225 ORTHO05D006830 3.7e-211 738.4 481 73.0
Lj2g0003273 Lotus japonicus HOM05D005225 ORTHO05D006830 1.4e-210 736.5 481 73.0
Medtr5g044980 Medicago truncatula HOM05D005225 ORTHO05D006830 2.4e-210 735.7 482 72.0
HanXRQChr03g0092011 Helianthus annuus HOM05D005225 ORTHO05D006830 3.1e-210 735.3 508 71.7
Migut.L01174 Erythranthe guttata HOM05D005225 ORTHO05D006830 2.0e-209 732.6 508 70.1
ClCG11G000950 Citrullus lanatus HOM05D005225 ORTHO05D006830 4.5e-209 731.5 469 72.9
AT4G30000 Arabidopsis thaliana HOM05D005225 ORTHO05D006830 3.5e-206 721.8 484 69.4
AL7G22240 Arabidopsis lyrata HOM05D005225 ORTHO05D006830 1.0e-205 720.3 484 69.4
Carub.0007s1065 Capsella rubella HOM05D005225 ORTHO05D006830 6.7e-205 717.6 477 69.0
Sp7g27800 Schrenkiella parvula HOM05D005225 ORTHO05D006830 6.7e-205 717.6 484 69.0
Thhalv10024845m.g Eutrema salsugineum HOM05D005225 ORTHO05D006830 8.7e-205 717.2 477 70.0
Lalb_Chr10g0098931 Lupinus albus HOM05D005225 ORTHO05D006830 4.3e-204 714.9 481 73.2
BraA01t00759Z Brassica rapa HOM05D005225 ORTHO05D006830 9.6e-204 713.8 486 68.7
CARHR237920 Cardamine hirsuta HOM05D005225 ORTHO05D006830 1.3e-203 713.4 492 67.7
A01p08120 Brassica napus HOM05D005225 ORTHO05D006830 4.0e-202 708.4 485 67.4
Gohir.A12G160100 Gossypium hirsutum HOM05D005225 ORTHO05D006830 4.0e-202 708.4 506 69.0
THA.LOC104821999 Tarenaya hassleriana HOM05D005225 ORTHO05D006830 5.3e-202 708.0 503 67.8
Aa31LG2G20560 Aethionema arabicum HOM05D005225 ORTHO05D006830 1.2e-201 706.8 483 67.1
BcaC09g51778 Brassica carinata HOM05D005225 ORTHO05D006830 5.8e-201 704.5 502 66.1
C01p09090 Brassica napus HOM05D005225 ORTHO05D006830 5.8e-201 704.5 502 66.1
BolC1t00900H Brassica oleracea HOM05D005225 ORTHO05D006830 5.8e-201 704.5 502 66.1
TAR629G1144 Trochodendron aralioides HOM05D005225 ORTHO05D006830 1.0e-200 703.7 508 70.7
Nitab4.5_0007734g0040 Nicotiana tabacum HOM05D005225 ORTHO05D006830 2.2e-200 702.6 440 77.0
CiPaw.06G093200 Carya illinoinensis HOM05D005225 ORTHO05D006830 6.5e-200 701.0 440 75.7
Nitab4.5_0000231g0060 Nicotiana tabacum HOM05D005225 ORTHO05D006830 8.4e-200 700.7 440 75.9
Gohir.D12G163500 Gossypium hirsutum HOM05D005225 ORTHO05D006830 9.3e-199 697.2 508 67.9
Aqoxy6G03037 Aquilegia oxysepala HOM05D005225 ORTHO05D006830 4.6e-198 694.9 440 73.0
EL10Ac6g15018 Beta vulgaris HOM05D005225 ORTHO05D006830 1.8e-197 693.0 461 71.4
unitig_22.g6894 Utricularia gibba HOM05D005225 ORTHO05D006830 6.3e-195 684.5 488 66.0
Thhalv10019460m.g Eutrema salsugineum HOM05D005225 ORTHO05D006830 4.1e-194 681.8 466 69.1
Oeu055095.2 Olea europaea HOM05D005225 ORTHO05D006830 7.2e-191 671.0 440 73.9
FAN17G1346 Fragaria x ananassa HOM05D005225 ORTHO05D006830 1.0e-189 667.2 405 78.5
AT1G69190 Arabidopsis thaliana HOM05D005225 ORTHO05D006830 8.8e-189 664.1 477 66.9
Os07g0618500 Oryza sativa ssp. japonica HOM05D005225 ORTHO05D006830 1.1e-188 663.7 486 64.8
Sp5g24250 Schrenkiella parvula HOM05D005225 ORTHO05D006830 2.0e-188 662.9 482 65.4
HPP92_017786 Vanilla planifolia HOM05D005225 ORTHO05D006830 2.2e-187 659.4 504 62.9
Actinidia00572 Actinidia chinensis HOM05D005225 ORTHO05D006830 4.2e-183 645.2 490 69.4
ATR0827G107 Amborella trichopoda HOM05D005225 ORTHO05D006830 6.1e-182 641.3 479 64.1
Solyc05g012090.4 Solanum lycopersicum HOM05D005225 ORTHO05D006830 1.0e-181 640.6 419 74.2
SEGI_35565 Sequoiadendron giganteum HOM05D005225 ORTHO05D006830 3.0e-181 639.0 505 61.4
FAN07G1983 Fragaria x ananassa HOM05D005225 ORTHO05D006830 1.1e-180 637.1 385 78.7
Zm00001eb319990 Zea mays HOM05D005225 ORTHO05D006830 1.1e-180 637.1 472 63.8
AL2G28280 Arabidopsis lyrata HOM05D005225 ORTHO05D006830 3.7e-179 632.1 453 64.9
SGA_v2.0_scaffold85G26791 Striga asiatica HOM05D005225 ORTHO05D006830 3.0e-173 612.5 468 63.9
SHI01330 Sapria himalayana HOM05D005225 ORTHO05D006830 1.1e-170 604.0 497 62.2
Aa31sc367G20 Aethionema arabicum HOM05D005225 ORTHO05D006830 4.1e-170 602.1 467 61.7
MD06G1024100 Malus domestica HOM05D005225 ORTHO05D006830 2.2e-168 596.3 440 66.4
AagrBONN_evm.TU.Sc2ySwM_362.716 Anthoceros agrestis HOM05D005225 ORTHO05D006830 3.1e-154 549.3 476 56.3
SEGI_04122 Sequoiadendron giganteum HOM05D005225 ORTHO05D006830 9.2e-146 521.2 505 52.9
Mapoly0021s0079 Marchantia polymorpha HOM05D005225 ORTHO05D006830 1.6e-145 520.4 485 54.0
Pp3c27_4310 Physcomitrium patens HOM05D005225 ORTHO05D006830 3.5e-145 519.2 477 54.1
RcHm_v2.0_Chr2g0139541 Rosa chinensis HOM05D005225 ORTHO05D006830 7.8e-145 518.1 318 78.6
Nn2g15478 Nelumbo nucifera HOM05D005225 ORTHO05D006830 1.2e-142 510.8 326 73.6
AUR62007898 Chenopodium quinoa HOM05D005225 ORTHO05D006830 1.5e-140 503.8 339 71.7
Glyma.01G062200 Glycine max HOM05D005225 ORTHO05D006830 1.5e-140 503.8 345 71.6
SMO358G0268 Selaginella moellendorffii HOM05D005225 ORTHO05D006830 6.2e-134 481.9 481 50.1
Phvul.007G262101 Phaseolus vulgaris HOM05D005225 ORTHO05D006830 2.1e-121 440.3 293 73.4
Phvul.001G131450 Phaseolus vulgaris HOM05D005225 ORTHO05D006830 1.0e-120 438.0 293 72.7
CBR_g61480 Chara braunii HOM05D005225 ORTHO05D006830 3.0e-120 436.4 494 47.8
CDE04G0587 Ceratophyllum demersum HOM05D005225 ORTHO05D006830 3.9e-120 436.0 306 69.0
SGA_v2.0_scaffold45G17115 Striga asiatica HOM05D001733 ORTHO05D001882 1.9e-111 407.1 380 54.7
HanXRQChr04g0120931 Helianthus annuus HOM05D005225 ORTHO05D006830 1.2e-105 387.9 250 74.8
MCO11G893 Micromonas commoda HOM05D005225 ORTHO05D006830 6.4e-99 365.5 537 41.9
Cre10.g428550 Chlamydomonas reinhardtii HOM05D005225 ORTHO05D006830 2.0e-92 344.0 618 36.4
PRCOL_00003253 Prasinoderma coloniale HOM05D005225 ORTHO05D006830 1.2e-81 308.1 454 40.5
Cfa024768 Carpinus fangiana HOM05D005225 ORTHO05D124687 2.2e-75 287.3 471 39.1
Nn4g23480 Nelumbo nucifera HOM05D005225 ORTHO05D006830 6.9e-69 265.8 155 78.1
LjContig00272g0016968 Lotus japonicus HOM05D005225 ORTHO05D006830 4.2e-58 229.9 213 54.5
SGA_v2.0_scaffold16G07808 Striga asiatica HOM05D005225 ORTHO05D006830 1.9e-50 204.5 240 47.9
RcHm_v2.0_Chr2g0139531 Rosa chinensis HOM05D005225 ORTHO05D006830 1.2e-47 195.3 177 58.2
Actinidia16153 Actinidia chinensis HOM05D005225 ORTHO05D006830 3.7e-46 190.3 309 42.1
Nn4g23481 Nelumbo nucifera HOM05D005225 ORTHO05D006830 1.4e-37 161.8 108 77.8
TAR371G0727 Trochodendron aralioides HOM05D005225 ORTHO05D006830 3.3e-34 150.6 237 40.9
HanXRQChr15g0477151 Helianthus annuus HOM05D005225 ORTHO05D044060 2.3e-32 144.4 99 70.7
SGA_v2.0_scaffold16G07809 Striga asiatica HOM05D005225 ORTHO05D048239 4.4e-31 140.2 119 55.5
HanXRQChr04g0120941 Helianthus annuus HOM05D005225 ORTHO05D048239 3.7e-30 137.1 87 71.3
AUR62007899 Chenopodium quinoa HOM05D005225 ORTHO05D044060 2.2e-22 111.3 83 60.2
CARHR062340 Cardamine hirsuta HOM05D005225 ORTHO05D006830 7.0e-21 106.3 69 63.8
QL06p011620 Quercus lobata HOM05D005225 ORTHO05D006830 1.0e-19 102.4 68 77.9
Medtr0076s0050 Medicago truncatula HOM05D005225 ORTHO05D265034 1.1e-18 99.0 88 55.7
Thecc.02G327500 Theobroma cacao HOM05D005225 ORTHO05D407879 2.9e-06 57.8 38 68.4


User provided reference genes

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