Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0003867 Camellia sinensis var. sinensis HOM05D017072 ORTHO05D004438 1.2e-64 249.6 123 100.0
CSS0000743 Camellia sinensis var. sinensis HOM05D017072 ORTHO05D004438 2.2e-29 132.5 115 61.7
CSS0049445 Camellia sinensis var. sinensis HOM05D017072 ORTHO05D004438 3.8e-29 131.7 115 61.7
CSS0018861 Camellia sinensis var. sinensis HOM05D017072 ORTHO05D004438 4.9e-29 131.3 115 60.9
CSS0040409 Camellia sinensis var. sinensis HOM05D017072 ORTHO05D004438 4.9e-29 131.3 115 60.9
CSS0015170 Camellia sinensis var. sinensis HOM05D017072 ORTHO05D004438 1.4e-28 129.8 115 63.5
CSS0026411 Camellia sinensis var. sinensis HOM05D017072 ORTHO05D004438 1.4e-28 129.8 115 60.0
CSS0048589 Camellia sinensis var. sinensis HOM05D017072 ORTHO05D004438 5.5e-28 127.9 115 62.6
Rhsim03G0110900 Rhododendron simsii HOM05D005304 ORTHO05D004438 1.2e-27 126.7 99 70.7
TAR623G1332 Trochodendron aralioides HOM05D005304 ORTHO05D004438 4.5e-22 108.2 105 59.0
TAR636G3524 Trochodendron aralioides HOM05D005304 ORTHO05D004438 7.6e-22 107.5 120 50.0
Manes.07G093500 Manihot esculenta HOM05D005304 ORTHO05D004438 1.7e-21 106.3 107 54.2
Potri.008G029600 Populus trichocarpa HOM05D005304 ORTHO05D004438 3.8e-21 105.1 107 53.3
Oeu059829.1 Olea europaea HOM05D005304 ORTHO05D004438 6.5e-21 104.4 100 56.0
TAR633G0523 Trochodendron aralioides HOM05D005304 ORTHO05D004438 1.9e-20 102.8 118 50.0
Oeu032435.1 Olea europaea HOM05D005304 ORTHO05D004438 5.5e-20 101.3 99 56.6
Duzib128G0830 Durio zibethinus HOM05D005304 ORTHO05D004438 6.1e-19 97.8 103 51.5
Duzib114G0655 Durio zibethinus HOM05D005304 ORTHO05D004438 1.0e-18 97.1 103 51.5
QL03p021677 Quercus lobata HOM05D005304 ORTHO05D004438 1.0e-18 97.1 115 48.7
Sabra08G0019800 Salix brachista HOM05D005304 ORTHO05D004438 1.0e-18 97.1 107 50.5
Cc02_g10500 Coffea canephora HOM05D005304 ORTHO05D004438 1.4e-18 96.7 129 48.1
MELO3C019852.2 Cucumis melo HOM05D005304 ORTHO05D004438 3.9e-18 95.1 119 49.6
CiPaw.01G264700 Carya illinoinensis HOM05D005304 ORTHO05D004438 6.7e-18 94.4 129 45.0
QL03p011649 Quercus lobata HOM05D005304 ORTHO05D004438 6.7e-18 94.4 115 47.8
Sed0018085 Sechium edule HOM05D005304 ORTHO05D004438 6.7e-18 94.4 124 48.4
ClCG08G007940 Citrullus lanatus HOM05D005304 ORTHO05D004438 1.5e-17 93.2 124 49.2
CsaV3_2G032750 Cucumis sativus L. HOM05D005304 ORTHO05D004438 1.5e-17 93.2 119 48.7
TAR369G0323 Trochodendron aralioides HOM05D001401 ORTHO05D002222 1.9e-17 92.8 108 52.8
Nitab4.5_0000593g0370 Nicotiana tabacum HOM05D005304 ORTHO05D004438 4.3e-17 91.7 105 49.5
Potri.010G231600 Populus trichocarpa HOM05D005304 ORTHO05D004438 4.3e-17 91.7 104 51.0
Lsat_1_v5_gn_8_22700 Lactuca sativa HOM05D005304 ORTHO05D004438 5.7e-17 91.3 123 44.7
Nn6g35176 Nelumbo nucifera HOM05D005304 ORTHO05D004438 5.7e-17 91.3 102 52.0
CiPaw.02G169800 Carya illinoinensis HOM05D005304 ORTHO05D004438 9.7e-17 90.5 103 48.5
Manes.10G053200 Manihot esculenta HOM05D005304 ORTHO05D004438 9.7e-17 90.5 113 52.2
Thecc.10G090600 Theobroma cacao HOM05D005304 ORTHO05D004438 1.7e-16 89.7 104 51.9
TWI38G0392 Tripterygium wilfordii HOM05D005304 ORTHO05D004438 1.7e-16 89.7 112 50.0
Sabra10G0179600 Salix brachista HOM05D005304 ORTHO05D004438 2.2e-16 89.4 108 46.3
QL08p052941 Quercus lobata HOM05D005304 ORTHO05D004438 3.7e-16 88.6 56 73.2
Duzib128G0918 Durio zibethinus HOM05D005304 ORTHO05D004438 1.1e-15 87.0 103 45.6
Migut.F01894 Erythranthe guttata HOM05D005304 ORTHO05D004438 1.4e-15 86.7 98 51.0
PGR044G1405 Punica granatum HOM05D005304 ORTHO05D004438 1.8e-15 86.3 109 45.0
Potri.010G231700 Populus trichocarpa HOM05D005304 ORTHO05D004438 2.4e-15 85.9 102 48.0
SalBow4G2705 Salvia bowleyana HOM05D005304 ORTHO05D004438 2.4e-15 85.9 100 52.0
Cpa.g.sc128.74 Carica papaya HOM05D005304 ORTHO05D004438 5.3e-15 84.7 101 51.5
TWI63G0695 Tripterygium wilfordii HOM05D005304 ORTHO05D004438 5.3e-15 84.7 108 48.1
Cfa001771 Carpinus fangiana HOM05D005304 ORTHO05D004438 6.9e-15 84.3 114 44.7
QL01p014739 Quercus lobata HOM05D005304 ORTHO05D004438 6.9e-15 84.3 90 51.1
Sed0010031 Sechium edule HOM05D005304 ORTHO05D004438 1.2e-14 83.6 113 48.7
Nitab4.5_0000107g0230 Nicotiana tabacum HOM05D005304 ORTHO05D004438 1.5e-14 83.2 102 49.0
FvH4_7g06790 Fragaria vesca HOM05D005304 ORTHO05D004438 2.0e-14 82.8 103 46.6
FAN06G1004 Fragaria x ananassa HOM05D005304 ORTHO05D004438 2.0e-14 82.8 103 46.6
FAN10G3090 Fragaria x ananassa HOM05D005304 ORTHO05D004438 2.0e-14 82.8 103 46.6
Haze_16785 Corylus avellana HOM05D005304 ORTHO05D004438 3.4e-14 82.0 118 44.1
FAN01G2164 Fragaria x ananassa HOM05D005304 ORTHO05D004438 3.4e-14 82.0 106 47.2
FAN03G1417 Fragaria x ananassa HOM05D005304 ORTHO05D004438 3.4e-14 82.0 106 47.2
COL.COLO4_32872 Corchorus olitorius HOM05D005304 ORTHO05D004438 4.5e-14 81.6 113 45.1
Nn2g13894 Nelumbo nucifera HOM05D005304 ORTHO05D004438 4.5e-14 81.6 106 47.2
Duzib150G0717 Durio zibethinus HOM05D005304 ORTHO05D004438 5.9e-14 81.3 83 53.0
FAN10G0320 Fragaria x ananassa HOM05D005304 ORTHO05D004438 5.9e-14 81.3 100 47.0
Lsat_1_v5_gn_9_70641 Lactuca sativa HOM05D005304 ORTHO05D004438 5.9e-14 81.3 124 41.1
Manes.10G053300 Manihot esculenta HOM05D005304 ORTHO05D004438 5.9e-14 81.3 102 48.0
Migut.F01597 Erythranthe guttata HOM05D005304 ORTHO05D004438 7.7e-14 80.9 106 46.2
Gohir.D01G118400 Gossypium hirsutum HOM05D005304 ORTHO05D004438 7.7e-14 80.9 108 47.2
Gorai.002G144400 Gossypium raimondii HOM05D005304 ORTHO05D004438 7.7e-14 80.9 108 47.2
Atru.chr12.921 Acer truncatum HOM05D005304 ORTHO05D004438 1.0e-13 80.5 132 43.9
ClCG05G021460 Citrullus lanatus HOM05D005304 ORTHO05D004438 1.0e-13 80.5 116 44.8
Ciclev10029845m.g Citrus clementina HOM05D005304 ORTHO05D004438 1.0e-13 80.5 113 41.6
Duzib168G0406 Durio zibethinus HOM05D005304 ORTHO05D004438 1.0e-13 80.5 59 62.7
Gohir.A05G290700 Gossypium hirsutum HOM05D005304 ORTHO05D004438 1.0e-13 80.5 105 46.7
Gohir.A01G128800 Gossypium hirsutum HOM05D005304 ORTHO05D004438 1.3e-13 80.1 108 47.2
Gohir.D05G291900 Gossypium hirsutum HOM05D005304 ORTHO05D004438 1.3e-13 80.1 107 48.6
Prupe.2G095100 Prunus persica HOM05D005304 ORTHO05D004438 1.3e-13 80.1 107 47.7
Gorai.009G307700 Gossypium raimondii HOM05D005304 ORTHO05D004438 1.7e-13 79.7 107 48.6
PGR044G0041 Punica granatum HOM05D005304 ORTHO05D004438 2.2e-13 79.3 121 42.1
FAN02G4580 Fragaria x ananassa HOM05D005304 ORTHO05D004438 2.9e-13 79.0 102 46.1
FAN12G4274 Fragaria x ananassa HOM05D005304 ORTHO05D004438 5.0e-13 78.2 102 46.1
CSS0028161 Camellia sinensis var. sinensis HOM05D005304 ORTHO05D004438 1.1e-12 77.0 91 50.5
CAN.G612.11 Capsicum annuum HOM05D005304 ORTHO05D004438 1.1e-12 77.0 110 44.5
Psat6g173960 Pisum sativum HOM05D005304 ORTHO05D004438 1.4e-12 76.6 133 38.3
RcHm_v2.0_Chr1g0336411 Rosa chinensis HOM05D005304 ORTHO05D004438 1.4e-12 76.6 110 44.5
Aqoxy2G01602 Aquilegia oxysepala HOM05D005304 ORTHO05D004438 2.5e-12 75.9 88 51.1
Lj5g0009089 Lotus japonicus HOM05D005304 ORTHO05D004438 2.5e-12 75.9 122 40.2
CSS0034177 Camellia sinensis var. sinensis HOM05D005304 ORTHO05D004438 3.2e-12 75.5 58 63.8
Glyma.20G190800 Glycine max HOM05D005304 ORTHO05D004438 3.2e-12 75.5 121 37.2
Thecc.09G296200 Theobroma cacao HOM05D005304 ORTHO05D004438 3.2e-12 75.5 75 53.3
Gohir.D05G087300 Gossypium hirsutum HOM05D005304 ORTHO05D004438 4.2e-12 75.1 81 54.3
Gorai.009G089100 Gossypium raimondii HOM05D005304 ORTHO05D004438 4.2e-12 75.1 91 49.5
MELO3C012381.2 Cucumis melo HOM05D005304 ORTHO05D004438 5.5e-12 74.7 119 40.3
Sabra08G0019700 Salix brachista HOM05D005304 ORTHO05D004438 7.2e-12 74.3 101 46.5
Gohir.A07G105600 Gossypium hirsutum HOM05D005304 ORTHO05D004438 9.4e-12 73.9 79 51.9
Manes.11G153500 Manihot esculenta HOM05D005304 ORTHO05D004438 9.4e-12 73.9 120 41.7
SalBow6G1975 Salvia bowleyana HOM05D005304 ORTHO05D004438 9.4e-12 73.9 104 47.1
PGSC0003DMG400016914 Solanum tuberosum HOM05D005304 ORTHO05D004438 1.2e-11 73.6 121 41.3
VMungo0720G0262 Vigna mungo HOM05D005304 ORTHO05D004438 1.2e-11 73.6 134 33.6
MSTRG.27507 Avicennia marina HOM05D005304 ORTHO05D004438 1.6e-11 73.2 100 45.0
Gohir.A05G084500 Gossypium hirsutum HOM05D005304 ORTHO05D004438 1.6e-11 73.2 58 62.1
Phvul.007G141600 Phaseolus vulgaris HOM05D005304 ORTHO05D004438 2.1e-11 72.8 122 35.2
CiPaw.13G144100 Carya illinoinensis HOM05D005304 ORTHO05D004438 4.7e-11 71.6 81 50.6
Eucgr.J01033 Eucalyptus grandis HOM05D005304 ORTHO05D004438 4.7e-11 71.6 101 44.6
Glyma.10G199500 Glycine max HOM05D005304 ORTHO05D004438 4.7e-11 71.6 130 33.1
Lalb_Chr06g0170051 Lupinus albus HOM05D005304 ORTHO05D004438 4.7e-11 71.6 88 48.9
Solyc03g071710.1 Solanum lycopersicum HOM05D005304 ORTHO05D004438 4.7e-11 71.6 120 41.7
Sopen03g019970 Solanum pennellii HOM05D005304 ORTHO05D004438 4.7e-11 71.6 120 41.7
Actinidia06715 Actinidia chinensis HOM05D005304 ORTHO05D004438 6.1e-11 71.2 94 51.1
Lalb_Chr03g0036331 Lupinus albus HOM05D005304 ORTHO05D004438 6.1e-11 71.2 104 37.5
CsaV3_5G035790 Cucumis sativus L. HOM05D005304 ORTHO05D004438 1.0e-10 70.5 123 39.0
CANSAT56G0274 Cannabis sativa HOM05D005304 ORTHO05D004438 1.4e-10 70.1 58 58.6
Gohir.D07G109600 Gossypium hirsutum HOM05D005304 ORTHO05D004438 1.4e-10 70.1 79 49.4
Prupe.6G114400 Prunus persica HOM05D005304 ORTHO05D004438 1.4e-10 70.1 58 58.6
Potri.009G003400 Populus trichocarpa HOM05D005304 ORTHO05D004438 1.8e-10 69.7 58 58.6
Hma1.2p1_0454F.1_g156290 Hydrangea macrophylla HOM05D005304 ORTHO05D004438 2.3e-10 69.3 108 43.5
Medtr1g090837 Medicago truncatula HOM05D005304 ORTHO05D004438 2.3e-10 69.3 128 37.5
SHI54636 Sapria himalayana HOM05D005304 ORTHO05D004438 5.1e-10 68.2 73 47.9
Sopen11g003740 Solanum pennellii HOM05D021137 ORTHO05D004438 5.1e-10 68.2 99 43.4
Solyc11g007880.1 Solanum lycopersicum HOM05D021137 ORTHO05D004438 6.7e-10 67.8 99 42.4
TWI79G0532 Tripterygium wilfordii HOM05D005304 ORTHO05D004438 6.7e-10 67.8 57 54.4
Eucgr.J01032 Eucalyptus grandis HOM05D005304 ORTHO05D004438 8.8e-10 67.4 61 52.5
Gohir.A05G393600 Gossypium hirsutum HOM05D005304 ORTHO05D004438 8.8e-10 67.4 104 41.3
Gorai.012G025400 Gossypium raimondii HOM05D005304 ORTHO05D004438 8.8e-10 67.4 104 41.3
Lalb_Chr02g0151151 Lupinus albus HOM05D005304 ORTHO05D004438 8.8e-10 67.4 115 40.0
PGSC0003DMG400023483 Solanum tuberosum HOM05D005304 ORTHO05D004438 8.8e-10 67.4 125 43.2
Gohir.D04G021300 Gossypium hirsutum HOM05D005304 ORTHO05D004438 1.1e-09 67.0 104 41.3
CiPaw.14G106000 Carya illinoinensis HOM05D005304 ORTHO05D004438 1.5e-09 66.6 98 41.8
Sed0006013 Sechium edule HOM05D005304 ORTHO05D004438 1.5e-09 66.6 109 42.2
Sed0009329 Sechium edule HOM05D005304 ORTHO05D004438 1.5e-09 66.6 59 55.9
TPR.G37843 Trifolium pratense HOM05D005304 ORTHO05D004438 1.5e-09 66.6 63 54.0
MSTRG.9124 Avicennia marina HOM05D005304 ORTHO05D004438 2.6e-09 65.9 104 42.3
Ca_10460_v3 Cicer arietinum L. HOM05D005304 ORTHO05D004438 3.3e-09 65.5 60 53.3
Ciclev10033091m.g Citrus clementina HOM05D005304 ORTHO05D004438 3.3e-09 65.5 116 40.5
DCAR_019059 Daucus carota HOM05D005304 ORTHO05D004438 3.3e-09 65.5 101 45.5
Eucgr.J00398 Eucalyptus grandis HOM05D005304 ORTHO05D004438 3.3e-09 65.5 82 47.6
PGR119G0321 Punica granatum HOM05D005304 ORTHO05D004438 5.7e-09 64.7 57 59.6
Gorai.001G117700 Gossypium raimondii HOM05D005304 ORTHO05D004438 7.4e-09 64.3 79 46.8
Sopen06g031160 Solanum pennellii HOM05D005304 ORTHO05D004438 9.7e-09 63.9 63 54.0
Atru.chr3.3495 Acer truncatum HOM05D005304 ORTHO05D004438 1.3e-08 63.5 125 36.0
Nitab4.5_0001163g0010 Nicotiana tabacum HOM05D005304 ORTHO05D004438 1.7e-08 63.2 58 58.6
Solyc11g007860.1 Solanum lycopersicum HOM05D005304 ORTHO05D004438 1.7e-08 63.2 103 43.7
Eucgr.B03916 Eucalyptus grandis HOM05D005304 ORTHO05D004438 2.2e-08 62.8 77 50.6
Manes.04G012000 Manihot esculenta HOM05D005304 ORTHO05D004438 3.7e-08 62.0 77 48.1
Sopen11g003730 Solanum pennellii HOM05D021137 ORTHO05D004438 6.3e-08 61.2 90 42.2
PGSC0003DMG400027330 Solanum tuberosum HOM05D005304 ORTHO05D004438 6.3e-08 61.2 100 42.0
Sopen11g003720 Solanum pennellii HOM05D005304 ORTHO05D004438 1.8e-07 59.7 103 40.8
PGR142G4012 Punica granatum HOM05D005304 ORTHO05D016259 2.4e-07 59.3 60 53.3
CAN.G135.30 Capsicum annuum HOM05D021137 ORTHO05D004438 4.1e-07 58.5 66 50.0
Lj3g0014047 Lotus japonicus HOM05D005967 ORTHO05D005174 1.5e-06 56.6 73 46.6
Lalb_Chr19g0129331 Lupinus albus HOM05D005304 ORTHO05D004438 1.5e-06 56.6 54 46.3
RcHm_v2.0_Chr5g0056381 Rosa chinensis HOM05D025255 ORTHO05D004438 1.5e-06 56.6 80 45.0
FvH4_3g30440 Fragaria vesca HOM05D025255 ORTHO05D004438 2.0e-06 56.2 81 45.7
FAN11G2118 Fragaria x ananassa HOM05D025255 ORTHO05D004438 2.0e-06 56.2 81 45.7
PGR102G2181 Punica granatum HOM05D005304 ORTHO05D004438 2.0e-06 56.2 57 45.6
Solyc11g007870.1 Solanum lycopersicum HOM05D021137 ORTHO05D004438 2.0e-06 56.2 97 38.1
Sc20g0001450 Simmondsia chinensis HOM05D005304 ORTHO05D004438 2.6e-06 55.8 111 37.8
Aqoxy1G01037 Aquilegia oxysepala HOM05D005304 ORTHO05D004438 4.5e-06 55.1 62 51.6
FAN21G1648 Fragaria x ananassa HOM05D025255 ORTHO05D004438 5.9e-06 54.7 81 45.7
Sopen05g033870 Solanum pennellii HOM05D005304 ORTHO05D004438 5.9e-06 54.7 120 37.5


User provided reference genes

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