Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0003860 Camellia sinensis var. sinensis HOM05D003190 ORTHO05D018834 3.6e-45 184.5 91 100.0
CSS0022713 Camellia sinensis var. sinensis HOM05D003190 ORTHO05D018834 1.1e-41 172.9 93 94.6
CSS0013935 Camellia sinensis var. sinensis HOM05D003190 ORTHO05D018834 1.2e-40 169.5 93 93.5
CSS0021368 Camellia sinensis var. sinensis HOM05D003190 ORTHO05D018834 1.2e-40 169.5 93 93.5
CSS0042216 Camellia sinensis var. sinensis HOM05D003190 ORTHO05D018834 1.3e-21 106.3 91 64.8
CSS0034884 Camellia sinensis var. sinensis HOM05D003190 ORTHO05D018834 5.0e-18 94.4 98 60.2
CSS0020681 Camellia sinensis var. sinensis HOM05D003190 ORTHO05D003745 3.6e-16 88.2 65 73.8
Thecc.01G394400 Theobroma cacao HOM05D003190 ORTHO05D003745 2.3e-15 85.5 65 70.8
CAN.G1473.15 Capsicum annuum HOM05D003190 ORTHO05D003745 3.0e-15 85.1 77 64.9
Rhsim07G0035600 Rhododendron simsii HOM05D003190 ORTHO05D003745 8.8e-15 83.6 65 70.8
vmacro13493 Vaccinium macrocarpon HOM05D003190 ORTHO05D003745 8.8e-15 83.6 65 69.2
Actinidia02786 Actinidia chinensis HOM05D003190 ORTHO05D003745 1.1e-14 83.2 65 70.8
Actinidia12147 Actinidia chinensis HOM05D003190 ORTHO05D003745 1.1e-14 83.2 65 70.8
Dinv43620 Davidia involucrata HOM05D003190 ORTHO05D003745 1.1e-14 83.2 65 70.8
FvH4_7g10110 Fragaria vesca HOM05D003190 ORTHO05D003745 1.1e-14 83.2 89 57.3
RcHm_v2.0_Chr1g0347681 Rosa chinensis HOM05D003190 ORTHO05D003745 1.1e-14 83.2 89 57.3
Ciclev10021825m.g Citrus clementina HOM05D003190 ORTHO05D003745 1.9e-14 82.4 65 69.2
Nitab4.5_0004620g0020 Nicotiana tabacum HOM05D003190 ORTHO05D003745 1.9e-14 82.4 62 75.8
Nitab4.5_0012667g0010 Nicotiana tabacum HOM05D003190 ORTHO05D003745 2.5e-14 82.0 65 70.8
Peaxi162Scf00475g00516 Petunia axillaris HOM05D003190 ORTHO05D003745 2.5e-14 82.0 65 70.8
Potri.014G047200 Populus trichocarpa HOM05D003190 ORTHO05D003745 2.5e-14 82.0 65 69.2
Actinidia12646 Actinidia chinensis HOM05D003190 ORTHO05D003745 3.3e-14 81.6 65 70.8
Duzib133G1461 Durio zibethinus HOM05D003190 ORTHO05D003745 3.3e-14 81.6 65 67.7
Migut.B01538 Erythranthe guttata HOM05D003190 ORTHO05D003745 4.3e-14 81.3 65 67.7
Manes.05G054500 Manihot esculenta HOM05D003190 ORTHO05D003745 4.3e-14 81.3 65 66.2
Hma1.2p1_0674F.1_g201530 Hydrangea macrophylla HOM05D003190 ORTHO05D003745 5.7e-14 80.9 64 70.3
QL04p030379 Quercus lobata HOM05D003190 ORTHO05D003745 7.4e-14 80.5 65 67.7
Potri.002G137400 Populus trichocarpa HOM05D003190 ORTHO05D003745 9.7e-14 80.1 65 67.7
Sabra14G0034200 Salix brachista HOM05D003190 ORTHO05D003745 9.7e-14 80.1 65 67.7
TPR.G14100 Trifolium pratense HOM05D003190 ORTHO05D003745 9.7e-14 80.1 65 69.2
GSVIVG01018273001 Vitis vinifera HOM05D003190 ORTHO05D003745 9.7e-14 80.1 65 67.7
Medtr7g081735 Medicago truncatula HOM05D003190 ORTHO05D003745 1.3e-13 79.7 65 69.2
Atru.chr5.131 Acer truncatum HOM05D003190 ORTHO05D003745 1.7e-13 79.3 65 67.7
Aa31LG1G11460 Aethionema arabicum HOM05D003190 ORTHO05D003745 1.7e-13 79.3 68 61.8
Cfa011075 Carpinus fangiana HOM05D003190 ORTHO05D003745 1.7e-13 79.3 65 67.7
Haze_02841 Corylus avellana HOM05D003190 ORTHO05D003745 1.7e-13 79.3 65 67.7
Glyma.13G187200 Glycine max HOM05D003190 ORTHO05D003745 1.7e-13 79.3 65 67.7
Lj9A558T43 Lonicera japonica HOM05D003190 ORTHO05D003745 1.7e-13 79.3 64 67.2
CSS0044756 Camellia sinensis var. sinensis HOM05D003190 ORTHO05D003745 2.2e-13 79.0 65 67.7
Dinv44067 Davidia involucrata HOM05D003190 ORTHO05D003745 2.2e-13 79.0 65 66.2
Aqoxy3G02735 Aquilegia oxysepala HOM05D003190 ORTHO05D003745 2.8e-13 78.6 65 64.6
CANSAT21G0456 Cannabis sativa HOM05D003190 ORTHO05D003745 2.8e-13 78.6 65 67.7
CANSAT21G1264 Cannabis sativa HOM05D003190 ORTHO05D003745 2.8e-13 78.6 65 67.7
CiPaw.13G026700 Carya illinoinensis HOM05D003190 ORTHO05D003745 2.8e-13 78.6 65 66.2
Gohir.D08G040200 Gossypium hirsutum HOM05D003190 ORTHO05D003745 2.8e-13 78.6 60 71.7
Lj1g0027839 Lotus japonicus HOM05D003190 ORTHO05D003745 2.8e-13 78.6 65 66.2
VMungo1127G1897 Vigna mungo HOM05D003190 ORTHO05D003745 2.8e-13 78.6 65 66.2
Duzib138G0899 Durio zibethinus HOM05D003190 ORTHO05D003745 3.7e-13 78.2 65 67.7
Gohir.D11G080200 Gossypium hirsutum HOM05D003190 ORTHO05D003745 3.7e-13 78.2 65 66.2
Gorai.007G085900 Gossypium raimondii HOM05D003190 ORTHO05D003745 3.7e-13 78.2 65 66.2
Psat3g098680 Pisum sativum HOM05D003190 ORTHO05D003745 3.7e-13 78.2 65 67.7
THA.LOC104801488 Tarenaya hassleriana HOM05D003190 ORTHO05D003745 3.7e-13 78.2 65 66.2
FAN10G1008 Fragaria x ananassa HOM05D003190 ORTHO05D003745 4.8e-13 77.8 80 56.2
Prupe.2G129800 Prunus persica HOM05D003190 ORTHO05D003745 4.8e-13 77.8 89 55.1
SGA_v2.0_scaffold52G19224 Striga asiatica HOM05D003190 ORTHO05D003745 4.8e-13 77.8 77 62.3
Eucgr.D01237 Eucalyptus grandis HOM05D003190 ORTHO05D003745 6.3e-13 77.4 65 64.6
Eucgr.L01589 Eucalyptus grandis HOM05D003190 ORTHO05D003745 6.3e-13 77.4 65 64.6
Gohir.A12G096900 Gossypium hirsutum HOM05D003190 ORTHO05D003745 6.3e-13 77.4 65 63.1
Gohir.D12G099800 Gossypium hirsutum HOM05D003190 ORTHO05D003745 6.3e-13 77.4 65 63.1
Gorai.008G108700 Gossypium raimondii HOM05D003190 ORTHO05D003745 6.3e-13 77.4 65 63.1
Phvul.011G190600 Phaseolus vulgaris HOM05D003190 ORTHO05D003745 6.3e-13 77.4 65 66.2
MSTRG.20693 Avicennia marina HOM05D003190 ORTHO05D003745 8.2e-13 77.0 65 66.2
Ca_08071_v3 Cicer arietinum L. HOM05D003190 ORTHO05D003745 8.2e-13 77.0 65 66.2
Migut.N01739 Erythranthe guttata HOM05D003190 ORTHO05D003745 8.2e-13 77.0 62 67.7
Gohir.A08G029500 Gossypium hirsutum HOM05D003190 ORTHO05D003745 8.2e-13 77.0 60 70.0
Sc02g0003110 Simmondsia chinensis HOM05D003190 ORTHO05D003745 8.2e-13 77.0 65 67.7
vmacro21057 Vaccinium macrocarpon HOM05D003190 ORTHO05D003745 8.2e-13 77.0 65 64.6
arahy.Tifrunner.gnm1.ann1.9AB492 Arachis hypogaea HOM05D003190 ORTHO05D003745 1.1e-12 76.6 65 66.2
arahy.Tifrunner.gnm1.ann1.WK7TVH Arachis hypogaea HOM05D003190 ORTHO05D003745 1.1e-12 76.6 65 66.2
MD02G1211700 Malus domestica HOM05D003190 ORTHO05D003745 1.1e-12 76.6 89 53.9
Oeu000052.1 Olea europaea HOM05D003190 ORTHO05D003745 1.1e-12 76.6 65 66.2
SalBow5G0141 Salvia bowleyana HOM05D003190 ORTHO05D003745 1.1e-12 76.6 62 67.7
C08p54150 Brassica napus HOM05D003190 ORTHO05D003745 1.4e-12 76.3 64 64.1
Glyma.15G224900 Glycine max HOM05D003190 ORTHO05D003745 1.4e-12 76.3 65 66.2
Hund17090 Selenicereus undatus HOM05D003190 ORTHO05D003745 1.4e-12 76.3 62 67.7
THA.LOC104814067 Tarenaya hassleriana HOM05D003190 ORTHO05D003745 1.4e-12 76.3 61 67.2
BcaC07g42340 Brassica carinata HOM05D003190 ORTHO05D003745 1.8e-12 75.9 65 64.6
Carub.0001s0013 Capsella rubella HOM05D003190 ORTHO05D003745 1.8e-12 75.9 65 64.6
DCAR_029466 Daucus carota HOM05D003190 ORTHO05D003745 1.8e-12 75.9 65 64.6
Thhalv10026057m.g Eutrema salsugineum HOM05D003190 ORTHO05D003745 1.8e-12 75.9 65 64.6
FAN01G1555 Fragaria x ananassa HOM05D003190 ORTHO05D003745 1.8e-12 75.9 80 55.0
Nn1g00857 Nelumbo nucifera HOM05D003190 ORTHO05D003745 1.8e-12 75.9 65 64.6
PGR042G3195 Punica granatum HOM05D003190 ORTHO05D003745 1.8e-12 75.9 65 66.2
MSTRG.17130 Avicennia marina HOM05D003190 ORTHO05D003745 2.4e-12 75.5 65 64.6
Cpa.g.sc101.14 Carica papaya HOM05D003190 ORTHO05D003745 2.4e-12 75.5 60 70.0
AUR62013747 Chenopodium quinoa HOM05D003190 ORTHO05D003745 2.4e-12 75.5 78 59.0
MD07G1107100 Malus domestica HOM05D003190 ORTHO05D003745 2.4e-12 75.5 87 51.7
CiPaw.14G020800 Carya illinoinensis HOM05D003190 ORTHO05D003745 3.1e-12 75.1 62 66.1
Cc02_g25080 Coffea canephora HOM05D003190 ORTHO05D003745 3.1e-12 75.1 65 64.6
Thhalv10008523m.g Eutrema salsugineum HOM05D003190 ORTHO05D003745 3.1e-12 75.1 65 63.1
Gorai.004G039100 Gossypium raimondii HOM05D003190 ORTHO05D003745 3.1e-12 75.1 60 70.0
Manes.01G272900 Manihot esculenta HOM05D003190 ORTHO05D003745 3.1e-12 75.1 65 63.1
QL02p060801 Quercus lobata HOM05D003190 ORTHO05D003745 3.1e-12 75.1 72 58.3
QL12p009727 Quercus lobata HOM05D003190 ORTHO05D003745 3.1e-12 75.1 72 59.7
Sp1g00180 Schrenkiella parvula HOM05D003190 ORTHO05D003745 3.1e-12 75.1 65 63.1
AL1G10140 Arabidopsis lyrata HOM05D003190 ORTHO05D003745 4.1e-12 74.7 65 63.1
BcaC06g34922 Brassica carinata HOM05D003190 ORTHO05D003745 4.1e-12 74.7 65 63.1
BcaC07g42436 Brassica carinata HOM05D003190 ORTHO05D003745 4.1e-12 74.7 65 63.1
A07p14830 Brassica napus HOM05D003190 ORTHO05D003745 4.1e-12 74.7 65 63.1
A09p69340 Brassica napus HOM05D003190 ORTHO05D003745 4.1e-12 74.7 65 63.1
BolC8t52924H Brassica oleracea HOM05D003190 ORTHO05D003745 4.1e-12 74.7 65 63.1
BraA07t29224Z Brassica rapa HOM05D003190 ORTHO05D003745 4.1e-12 74.7 65 63.1
CARHR000240 Cardamine hirsuta HOM05D003190 ORTHO05D003745 4.1e-12 74.7 65 63.1
Gohir.A11G075600 Gossypium hirsutum HOM05D003190 ORTHO05D003745 4.1e-12 74.7 65 63.1
PGSC0003DMG400026050 Solanum tuberosum HOM05D003190 ORTHO05D003745 4.1e-12 74.7 65 66.2
BolC7t42709H Brassica oleracea HOM05D003190 ORTHO05D003745 5.3e-12 74.3 66 62.1
Ciclev10021722m.g Citrus clementina HOM05D003190 ORTHO05D003745 5.3e-12 74.3 65 63.1
MELO3C022274.2 Cucumis melo HOM05D003190 ORTHO05D003745 5.3e-12 74.3 65 63.1
CsaV3_6G008580 Cucumis sativus L. HOM05D003190 ORTHO05D003745 5.3e-12 74.3 65 63.1
ECA234G0556 Erigeron canadensis HOM05D003190 ORTHO05D003745 5.3e-12 74.3 65 63.1
Lalb_Chr19g0126531 Lupinus albus HOM05D003190 ORTHO05D003745 5.3e-12 74.3 65 61.5
Oeu020085.3 Olea europaea HOM05D003190 ORTHO05D003745 5.3e-12 74.3 65 64.6
ClCG06G002540 Citrullus lanatus HOM05D003190 ORTHO05D003745 6.9e-12 73.9 65 63.1
FAN06G0700 Fragaria x ananassa HOM05D003190 ORTHO05D003745 6.9e-12 73.9 80 55.0
HanXRQChr13g0414471 Helianthus annuus HOM05D003190 ORTHO05D003745 6.9e-12 73.9 65 64.6
Sed0021185 Sechium edule HOM05D003190 ORTHO05D003745 6.9e-12 73.9 65 63.1
SGA_v2.0_scaffold153G36905 Striga asiatica HOM05D003190 ORTHO05D003745 6.9e-12 73.9 77 57.1
HanXRQChr02g0046721 Helianthus annuus HOM05D003190 ORTHO05D003745 9.1e-12 73.6 63 61.9
Lj7C545T16 Lonicera japonica HOM05D003190 ORTHO05D003745 9.1e-12 73.6 65 63.1
Nn6g33831 Nelumbo nucifera HOM05D003190 ORTHO05D003745 9.1e-12 73.6 65 63.1
SGA_v2.0_scaffold43G16535 Striga asiatica HOM05D003190 ORTHO05D003745 9.1e-12 73.6 62 64.5
TAR375G0928 Trochodendron aralioides HOM05D003190 ORTHO05D003745 9.1e-12 73.6 65 63.1
Ah.05g177860 Amaranthus hybridus HOM05D003190 ORTHO05D003745 1.2e-11 73.2 70 58.6
BcaB03g14242 Brassica carinata HOM05D003190 ORTHO05D003745 1.2e-11 73.2 65 61.5
Peaxi162Scf00103g00518 Petunia axillaris HOM05D003190 ORTHO05D003745 1.2e-11 73.2 63 66.7
Sopen01g036080 Solanum pennellii HOM05D003190 ORTHO05D003745 1.2e-11 73.2 65 64.6
TWI14G0166 Tripterygium wilfordii HOM05D003190 ORTHO05D003745 1.2e-11 73.2 77 59.7
EL10Ac1g00758 Beta vulgaris HOM05D003190 ORTHO05D003745 1.5e-11 72.8 60 70.0
C07p21780 Brassica napus HOM05D003190 ORTHO05D003745 1.5e-11 72.8 66 60.6
FAN03G0648 Fragaria x ananassa HOM05D003190 ORTHO05D003745 1.5e-11 72.8 53 71.7
Lsat_1_v5_gn_4_39820 Lactuca sativa HOM05D003190 ORTHO05D003745 1.5e-11 72.8 65 61.5
TWI23G0403 Tripterygium wilfordii HOM05D003190 ORTHO05D003745 1.5e-11 72.8 66 63.6
AT1G02090 Arabidopsis thaliana HOM05D003190 ORTHO05D003745 2.0e-11 72.4 65 63.1
CARHR248010 Cardamine hirsuta HOM05D003190 ORTHO05D003745 2.6e-11 72.0 60 65.0
Phvul.008G046600 Phaseolus vulgaris HOM05D003190 ORTHO05D003745 2.6e-11 72.0 58 69.0
GSVIVG01004797001 Vitis vinifera HOM05D003190 ORTHO05D003745 2.6e-11 72.0 65 58.5
ECA236G0031 Erigeron canadensis HOM05D003190 ORTHO05D003745 3.4e-11 71.6 65 61.5
Sp6g00030 Schrenkiella parvula HOM05D003190 ORTHO05D003745 3.4e-11 71.6 80 55.0
FAN04G2686 Fragaria x ananassa HOM05D003190 ORTHO05D003745 4.5e-11 71.2 65 58.5
FAN18G2349 Fragaria x ananassa HOM05D003190 ORTHO05D003745 4.5e-11 71.2 62 62.9
Lalb_Chr03g0040361 Lupinus albus HOM05D003190 ORTHO05D003745 4.5e-11 71.2 65 60.0
MBI04_g07222_MAGBIO Magnolia biondii HOM05D003190 ORTHO05D003745 4.5e-11 71.2 62 64.5
Glyma.18G252100 Glycine max HOM05D003190 ORTHO05D003745 5.9e-11 70.9 60 66.7
Carub.0006s3723 Capsella rubella HOM05D003190 ORTHO05D003745 7.7e-11 70.5 63 63.5
FvH4_5g19860 Fragaria vesca HOM05D003190 ORTHO05D003745 7.7e-11 70.5 65 58.5
FAN08G1565 Fragaria x ananassa HOM05D003190 ORTHO05D003745 7.7e-11 70.5 65 58.5
FAN13G1610 Fragaria x ananassa HOM05D003190 ORTHO05D003745 7.7e-11 70.5 65 58.5
PSO782G2887 Papaver somniferum HOM05D003190 ORTHO05D003745 7.7e-11 70.5 60 65.0
TWI59G1064 Tripterygium wilfordii HOM05D003190 ORTHO05D003745 7.7e-11 70.5 65 63.1
ATR0057G124 Amborella trichopoda HOM05D003190 ORTHO05D003745 1.0e-10 70.1 65 61.5
BraA09t42279Z Brassica rapa HOM05D003190 ORTHO05D003745 1.0e-10 70.1 65 60.0
PSO063G4643 Papaver somniferum HOM05D003190 ORTHO05D003745 1.0e-10 70.1 60 65.0
Solyc01g090290.4 Solanum lycopersicum HOM05D003190 ORTHO05D003745 1.0e-10 70.1 65 63.1
TAR374G0382 Trochodendron aralioides HOM05D003190 ORTHO05D003745 1.0e-10 70.1 65 60.0
AUR62023404 Chenopodium quinoa HOM05D003190 ORTHO05D003745 1.7e-10 69.3 78 56.4
SEGI_01663 Sequoiadendron giganteum HOM05D003190 ORTHO05D003745 1.7e-10 69.3 65 61.5
Oeu063237.1 Olea europaea HOM05D003190 ORTHO05D003745 2.2e-10 68.9 56 67.9
Zm00001eb321750 Zea mays HOM05D003190 ORTHO05D003745 2.2e-10 68.9 60 63.3
SMO239G0056 Selaginella moellendorffii HOM05D003190 ORTHO05D003745 3.8e-10 68.2 65 58.5
Zm00001eb105310 Zea mays HOM05D003190 ORTHO05D003745 3.8e-10 68.2 60 63.3
RcHm_v2.0_Chr7g0204651 Rosa chinensis HOM05D003190 ORTHO05D003745 5.0e-10 67.8 65 58.5
Sabra03G0051000 Salix brachista HOM05D003190 ORTHO05D018834 5.0e-10 67.8 60 61.7
AagrBONN_evm.TU.Sc2ySwM_228.489 Anthoceros agrestis HOM05D003190 ORTHO05D003745 6.5e-10 67.4 65 56.9
Hund27406 Selenicereus undatus HOM05D003190 ORTHO05D003745 8.5e-10 67.0 65 58.5
Prupe.5G061700 Prunus persica HOM05D003190 ORTHO05D003745 1.1e-09 66.6 65 56.9
Potri.001G153900 Populus trichocarpa HOM05D003190 ORTHO05D018834 1.4e-09 66.2 70 58.6
CDE12G0792 Ceratophyllum demersum HOM05D003190 ORTHO05D003745 1.9e-09 65.9 65 58.5
MD04G1057800 Malus domestica HOM05D003190 ORTHO05D003745 1.9e-09 65.9 65 55.4
HPP92_001540 Vanilla planifolia HOM05D000263 ORTHO05D000213 3.2e-09 65.1 65 56.9
Pp3c9_18560 Physcomitrium patens HOM05D003190 ORTHO05D003745 4.2e-09 64.7 60 61.7
HanXRQChr06g0167931 Helianthus annuus HOM05D003190 ORTHO05D003745 7.2e-09 63.9 65 61.5
Pp3c15_22100 Physcomitrium patens HOM05D003190 ORTHO05D003745 7.2e-09 63.9 60 60.0
Mapoly0041s0006 Marchantia polymorpha HOM05D003190 ORTHO05D003745 9.4e-09 63.5 65 55.4
BcaB03g13632 Brassica carinata HOM05D003190 ORTHO05D003745 2.7e-08 62.0 79 49.4
CBR_g6296 Chara braunii HOM05D000019 ORTHO05D000002 2.7e-08 62.0 65 55.4
Potri.003G081066 Populus trichocarpa HOM05D003190 ORTHO05D003745 4.7e-08 61.2 59 59.3
SHI13612 Sapria himalayana HOM05D003190 ORTHO05D003745 3.0e-07 58.5 59 55.9


User provided reference genes

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