Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0003854 Camellia sinensis var. sinensis HOM05D003474 ORTHO05D003971 9.8e-110 400.2 211 100.0
CSS0039995 Camellia sinensis var. sinensis HOM05D003474 ORTHO05D003971 1.2e-104 383.3 211 89.1
CSS0002095 Camellia sinensis var. sinensis HOM05D003474 ORTHO05D003971 5.0e-98 361.3 212 88.7
CSS0044421 Camellia sinensis var. sinensis HOM05D003474 ORTHO05D003971 1.1e-97 360.1 212 84.9
CSS0009549 Camellia sinensis var. sinensis HOM05D003474 ORTHO05D003971 1.6e-96 356.3 212 90.1
CSS0038157 Camellia sinensis var. sinensis HOM05D003474 ORTHO05D003971 1.3e-56 223.8 213 55.9
Potri.007G092300 Populus trichocarpa HOM05D003474 ORTHO05D003971 2.0e-54 216.5 206 51.0
Hma1.2p1_0047F.1_g027910 Hydrangea macrophylla HOM05D003474 ORTHO05D003971 7.6e-54 214.5 214 55.6
Dinv13182 Davidia involucrata HOM05D003474 ORTHO05D003971 2.9e-53 212.6 177 60.5
QL06p049618 Quercus lobata HOM05D003474 ORTHO05D003971 5.5e-52 208.4 213 52.6
Potri.005G076100 Populus trichocarpa HOM05D003474 ORTHO05D003971 2.7e-51 206.1 200 52.0
QL06p049633 Quercus lobata HOM05D003474 ORTHO05D003971 3.5e-51 205.7 214 51.9
Sabra07G0075900 Salix brachista HOM05D003474 ORTHO05D003971 4.6e-51 205.3 206 49.5
Sabra07G0076000 Salix brachista HOM05D003474 ORTHO05D003971 4.6e-51 205.3 206 49.5
Sabra07G0076200 Salix brachista HOM05D003474 ORTHO05D003971 6.0e-51 204.9 206 49.5
Sabra07G0076300 Salix brachista HOM05D003474 ORTHO05D003971 6.0e-51 204.9 206 49.5
Sabra07G0076100 Salix brachista HOM05D003474 ORTHO05D003971 1.3e-50 203.8 206 49.0
Lj4P889T19 Lonicera japonica HOM05D003474 ORTHO05D003971 1.8e-50 203.4 214 49.5
Nn5g30135 Nelumbo nucifera HOM05D003474 ORTHO05D003971 1.8e-50 203.4 214 49.5
Oeu056606.1 Olea europaea HOM05D003474 ORTHO05D003971 3.9e-50 202.2 212 53.8
Oeu002403.1 Olea europaea HOM05D003474 ORTHO05D003971 1.5e-49 200.3 212 50.5
Thecc.01G102400 Theobroma cacao HOM05D003474 ORTHO05D003971 1.5e-49 200.3 215 51.2
Cfa002670 Carpinus fangiana HOM05D003474 ORTHO05D003971 2.5e-49 199.5 216 50.9
TAR381G0511 Trochodendron aralioides HOM05D003474 ORTHO05D003971 5.7e-49 198.4 211 50.2
Ciclev10027277m.g Citrus clementina HOM05D003474 ORTHO05D003971 7.4e-49 198.0 218 52.3
QL06p049587 Quercus lobata HOM05D003474 ORTHO05D003971 1.4e-47 193.7 210 48.1
Nn1g05334 Nelumbo nucifera HOM05D003474 ORTHO05D003971 2.4e-47 193.0 214 49.5
Duzib187G1721 Durio zibethinus HOM05D003474 ORTHO05D003971 5.3e-47 191.8 219 47.9
Cc07_g15300 Coffea canephora HOM05D003474 ORTHO05D003971 2.0e-46 189.9 208 50.0
RcHm_v2.0_Chr2g0114461 Rosa chinensis HOM05D003474 ORTHO05D003971 4.5e-46 188.7 217 47.9
Rhsim08G0010000 Rhododendron simsii HOM05D003474 ORTHO05D003971 5.8e-46 188.3 208 51.9
QL06p049593 Quercus lobata HOM05D003474 ORTHO05D003971 1.1e-44 184.1 210 47.1
Duzib147G1557 Durio zibethinus HOM05D003474 ORTHO05D003971 1.9e-44 183.3 209 49.8
Manes.12G135500 Manihot esculenta HOM05D003474 ORTHO05D003971 1.9e-44 183.3 213 45.5
TWI74G0170 Tripterygium wilfordii HOM05D003474 ORTHO05D003971 7.1e-44 181.4 218 46.8
FAN26G3130 Fragaria x ananassa HOM05D003474 ORTHO05D003971 9.3e-44 181.0 217 48.8
COL.COLO4_09957 Corchorus olitorius HOM05D003474 ORTHO05D003971 2.1e-43 179.9 220 45.9
FvH4_1g20980 Fragaria vesca HOM05D003474 ORTHO05D003971 2.1e-43 179.9 217 47.0
FAN28G0803 Fragaria x ananassa HOM05D003474 ORTHO05D003971 2.7e-43 179.5 217 47.9
CiPaw.04G099000 Carya illinoinensis HOM05D003474 ORTHO05D003971 4.6e-43 178.7 215 46.0
Prupe.6G186100 Prunus persica HOM05D003474 ORTHO05D003971 4.6e-43 178.7 207 45.4
Gohir.A11G201900 Gossypium hirsutum HOM05D003474 ORTHO05D003971 6.1e-43 178.3 217 47.0
CiPaw.03G141500 Carya illinoinensis HOM05D003474 ORTHO05D003971 7.9e-43 177.9 218 46.8
FAN23G2065 Fragaria x ananassa HOM05D003474 ORTHO05D003971 1.0e-42 177.6 217 47.9
Peaxi162Scf00611g00012 Petunia axillaris HOM05D003474 ORTHO05D003971 1.8e-42 176.8 218 45.4
FAN19G2364 Fragaria x ananassa HOM05D003474 ORTHO05D003971 5.1e-42 175.3 217 46.5
Gorai.007G239100 Gossypium raimondii HOM05D003474 ORTHO05D003971 5.1e-42 175.3 209 45.9
Gohir.D11G221900 Gossypium hirsutum HOM05D003474 ORTHO05D003971 1.5e-41 173.7 213 45.5
CAN.G441.1 Capsicum annuum HOM05D003474 ORTHO05D003971 1.9e-41 173.3 215 45.1
Aqoxy6G00810 Aquilegia oxysepala HOM05D003474 ORTHO05D003971 4.3e-41 172.2 207 45.9
TAR625G1533 Trochodendron aralioides HOM05D003474 ORTHO05D003971 2.2e-40 169.9 211 45.0
RcHm_v2.0_Chr2g0114471 Rosa chinensis HOM05D003474 ORTHO05D003971 2.8e-40 169.5 221 43.9
Cfa002671 Carpinus fangiana HOM05D003474 ORTHO05D003971 1.4e-39 167.2 214 46.3
SalBow5G3228 Salvia bowleyana HOM05D003474 ORTHO05D003971 1.8e-39 166.8 202 46.0
TAR625G0209 Trochodendron aralioides HOM05D003474 ORTHO05D003971 3.1e-39 166.0 197 44.7
AUR62003788 Chenopodium quinoa HOM05D003474 ORTHO05D003971 4.1e-39 165.6 218 42.7
PGSC0003DMG400001891 Solanum tuberosum HOM05D003474 ORTHO05D003971 9.0e-39 164.5 217 45.6
Aqoxy6G00809 Aquilegia oxysepala HOM05D003474 ORTHO05D003971 2.6e-38 162.9 205 43.4
SalBow5G0419 Salvia bowleyana HOM05D003474 ORTHO05D003971 2.6e-38 162.9 202 45.0
SalBow5G4466 Salvia bowleyana HOM05D003474 ORTHO05D003971 2.6e-38 162.9 202 45.0
AUR62002014 Chenopodium quinoa HOM05D003474 ORTHO05D003971 3.4e-38 162.5 218 41.7
Sed0016843 Sechium edule HOM05D003474 ORTHO05D003971 5.9e-38 161.8 209 44.0
Eucgr.I00429 Eucalyptus grandis HOM05D003474 ORTHO05D003971 2.2e-37 159.8 220 44.1
Eucgr.I00430 Eucalyptus grandis HOM05D003474 ORTHO05D003971 2.2e-37 159.8 220 44.1
Nitab4.5_0000104g0120 Nicotiana tabacum HOM05D003474 ORTHO05D003971 5.0e-37 158.7 155 54.2
EL10Ac6g15097 Beta vulgaris HOM05D003474 ORTHO05D003971 8.5e-37 157.9 211 40.8
ClCG01G018800 Citrullus lanatus HOM05D003474 ORTHO05D003971 1.1e-36 157.5 214 42.1
Atru.chr4.72 Acer truncatum HOM05D003474 ORTHO05D003971 1.4e-36 157.1 246 42.7
Atru.chr4.73 Acer truncatum HOM05D003474 ORTHO05D003971 1.4e-36 157.1 246 42.7
Nitab4.5_0000104g0070 Nicotiana tabacum HOM05D003474 ORTHO05D003971 1.9e-36 156.8 161 52.2
Nitab4.5_0016805g0010 Nicotiana tabacum HOM05D003474 ORTHO05D003971 2.5e-36 156.4 157 53.5
Cpa.g.sc213.15 Carica papaya HOM05D003474 ORTHO05D003971 7.2e-36 154.8 202 42.1
SalBow3G2422 Salvia bowleyana HOM05D003474 ORTHO05D003971 9.4e-36 154.5 207 47.8
PGSC0003DMG400021798 Solanum tuberosum HOM05D003474 ORTHO05D003971 2.1e-35 153.3 212 42.9
Actinidia28867 Actinidia chinensis HOM05D003474 ORTHO05D003971 2.7e-35 152.9 184 49.5
MBI02_g08731_MAGBIO Magnolia biondii HOM05D003474 ORTHO05D003971 4.6e-35 152.1 203 41.9
Lsat_1_v5_gn_5_43140 Lactuca sativa HOM05D003474 ORTHO05D003971 6.1e-35 151.8 209 40.2
Lsat_1_v5_gn_5_43240 Lactuca sativa HOM05D003474 ORTHO05D003971 6.1e-35 151.8 209 40.2
Atru.chr4.70 Acer truncatum HOM05D003474 ORTHO05D003971 1.0e-34 151.0 243 42.4
Ah.02g122460 Amaranthus hybridus HOM05D003474 ORTHO05D003971 2.3e-34 149.8 220 40.5
CsaV3_6G045460 Cucumis sativus L. HOM05D003474 ORTHO05D003971 3.0e-34 149.4 211 41.2
Sabra05G0062700 Salix brachista HOM05D003474 ORTHO05D003971 3.9e-34 149.1 176 45.5
ECA246G4897 Erigeron canadensis HOM05D003474 ORTHO05D003971 5.1e-34 148.7 214 37.4
DCAR_003501 Daucus carota HOM05D003474 ORTHO05D003971 6.7e-34 148.3 206 39.8
PSO781G0304 Papaver somniferum HOM05D003474 ORTHO05D003971 8.8e-34 147.9 210 39.5
Lsat_1_v5_gn_5_43320 Lactuca sativa HOM05D003474 ORTHO05D003971 2.0e-33 146.7 209 39.7
DCAR_003502 Daucus carota HOM05D003474 ORTHO05D003971 4.3e-33 145.6 208 40.4
Sopen03g021520 Solanum pennellii HOM05D003474 ORTHO05D003971 4.3e-33 145.6 212 41.0
Lsat_1_v5_gn_5_43280 Lactuca sativa HOM05D003474 ORTHO05D003971 5.7e-33 145.2 209 38.8
Sabra07G0076400 Salix brachista HOM05D003474 ORTHO05D003971 3.7e-32 142.5 199 40.7
Lsat_1_v5_gn_5_43380 Lactuca sativa HOM05D003474 ORTHO05D003971 6.3e-32 141.7 209 39.7
PSO781G0331 Papaver somniferum HOM05D003474 ORTHO05D003971 1.1e-31 141.0 217 37.8
Haze_24940 Corylus avellana HOM05D003474 ORTHO05D003971 1.8e-31 140.2 135 53.3
QL06p049605 Quercus lobata HOM05D003474 ORTHO05D003971 1.8e-31 140.2 110 63.6
Solyc03g078620.1 Solanum lycopersicum HOM05D003474 ORTHO05D003971 2.4e-31 139.8 216 41.2
PSO781G0183 Papaver somniferum HOM05D003474 ORTHO05D003971 1.5e-30 137.1 217 37.3
Migut.H02362 Erythranthe guttata HOM05D003474 ORTHO05D003971 2.6e-30 136.3 223 37.7
THA.LOC104804926 Tarenaya hassleriana HOM05D003474 ORTHO05D003971 3.4e-30 136.0 208 36.5
SalBow5G5729 Salvia bowleyana HOM05D003474 ORTHO05D003971 5.9e-30 135.2 169 44.4
A10p27350 Brassica napus HOM05D003474 ORTHO05D003971 7.7e-30 134.8 216 38.4
DCAR_003503 Daucus carota HOM05D003474 ORTHO05D003971 7.7e-30 134.8 185 41.6
Sp6g33190 Schrenkiella parvula HOM05D003474 ORTHO05D003971 7.7e-30 134.8 216 40.3
Thhalv10005637m.g Eutrema salsugineum HOM05D003474 ORTHO05D003971 1.0e-29 134.4 207 37.2
AL8G42540 Arabidopsis lyrata HOM05D003474 ORTHO05D003971 1.7e-29 133.7 209 36.4
CANSAT01G1468 Cannabis sativa HOM05D003474 ORTHO05D003971 3.8e-29 132.5 226 38.9
PSO781G0184 Papaver somniferum HOM05D003474 ORTHO05D003971 3.8e-29 132.5 214 36.0
Sp2g28110 Schrenkiella parvula HOM05D003474 ORTHO05D003971 5.0e-29 132.1 207 37.7
BcaB08g37131 Brassica carinata HOM05D003474 ORTHO05D003971 6.5e-29 131.7 216 38.0
Migut.L00118 Erythranthe guttata HOM05D003474 ORTHO05D003971 6.5e-29 131.7 209 41.6
PSO541G6092 Papaver somniferum HOM05D003474 ORTHO05D003971 8.5e-29 131.3 217 35.5
BcaC01g02734 Brassica carinata HOM05D003474 ORTHO05D003971 1.9e-28 130.2 206 34.5
C03p61160 Brassica napus HOM05D003474 ORTHO05D003971 1.9e-28 130.2 206 34.5
BolC3t18376H Brassica oleracea HOM05D003474 ORTHO05D003971 1.9e-28 130.2 206 34.5
AT5G65030 Arabidopsis thaliana HOM05D003474 ORTHO05D003971 2.5e-28 129.8 209 35.4
BcaC04g19322 Brassica carinata HOM05D003474 ORTHO05D003971 5.5e-28 128.6 216 37.5
C09p67210 Brassica napus HOM05D003474 ORTHO05D003971 5.5e-28 128.6 216 37.5
CANSAT01G0924 Cannabis sativa HOM05D003474 ORTHO05D003971 7.2e-28 128.3 222 38.7
AT5G10210 Arabidopsis thaliana HOM05D003474 ORTHO05D003971 9.4e-28 127.9 218 37.6
BraA10t44786Z Brassica rapa HOM05D003474 ORTHO05D003971 9.4e-28 127.9 216 37.0
SalBow5G1505 Salvia bowleyana HOM05D003474 ORTHO05D003971 2.7e-27 126.3 105 55.2
Carub.0008s2587 Capsella rubella HOM05D003474 ORTHO05D003971 3.6e-27 125.9 206 35.4
Lsat_1_v5_gn_5_43760 Lactuca sativa HOM05D003474 ORTHO05D003971 4.7e-27 125.6 223 38.1
BcaB02g09856 Brassica carinata HOM05D003474 ORTHO05D003971 7.9e-27 124.8 206 34.0
Thhalv10014734m.g Eutrema salsugineum HOM05D003474 ORTHO05D003971 7.9e-27 124.8 217 37.3
CARHR293740 Cardamine hirsuta HOM05D003474 ORTHO05D003971 1.4e-26 124.0 206 34.5
BolC9t59492H Brassica oleracea HOM05D003474 ORTHO05D003971 1.8e-26 123.6 216 36.6
BraA06t26118Z Brassica rapa HOM05D003474 ORTHO05D003971 1.8e-26 123.6 206 34.5
PGR004G1795 Punica granatum HOM05D003474 ORTHO05D003971 1.8e-26 123.6 216 36.6
TPR.G17834 Trifolium pratense HOM05D003474 ORTHO05D003971 3.0e-26 122.9 211 36.0
Sc16g0005640 Simmondsia chinensis HOM05D003474 ORTHO05D003971 6.7e-26 121.7 214 38.3
Psat5g089920 Pisum sativum HOM05D003474 ORTHO05D003971 8.8e-26 121.3 211 34.6
Carub.0006s0867 Capsella rubella HOM05D003474 ORTHO05D003971 1.1e-25 120.9 216 34.7
AL6G20700 Arabidopsis lyrata HOM05D003474 ORTHO05D003971 2.0e-25 120.2 216 34.7
TPR.G17845 Trifolium pratense HOM05D003474 ORTHO05D003971 2.0e-25 120.2 211 36.0
Ca_16531_v3 Cicer arietinum L. HOM05D003474 ORTHO05D003971 4.4e-25 119.0 210 35.2
Ca_16532_v3 Cicer arietinum L. HOM05D003474 ORTHO05D003971 5.7e-25 118.6 210 34.8
Ca_16533_v3 Cicer arietinum L. HOM05D003474 ORTHO05D003971 7.4e-25 118.2 210 35.2
TPR.G17847 Trifolium pratense HOM05D003474 ORTHO05D003971 7.4e-25 118.2 212 34.4
Medtr3g087280 Medicago truncatula HOM05D003474 ORTHO05D003971 1.3e-24 117.5 211 34.1
TPR.G17848 Trifolium pratense HOM05D003474 ORTHO05D003971 1.3e-24 117.5 211 34.1
CARHR203080 Cardamine hirsuta HOM05D003474 ORTHO05D003971 2.2e-24 116.7 213 34.3
Ca_16530_v3 Cicer arietinum L. HOM05D003474 ORTHO05D003971 3.7e-24 115.9 210 34.3
Lj6g0019645 Lotus japonicus HOM05D003474 ORTHO05D003971 4.8e-24 115.5 213 33.8
Lj6g0012852 Lotus japonicus HOM05D003474 ORTHO05D003971 6.3e-24 115.2 215 34.4
Medtr3g087278 Medicago truncatula HOM05D003474 ORTHO05D003971 6.3e-24 115.2 210 36.7
Glyma.18G017500 Glycine max HOM05D003474 ORTHO05D003971 8.2e-24 114.8 219 39.3
Lj6g0005521 Lotus japonicus HOM05D003474 ORTHO05D003971 8.2e-24 114.8 213 34.3
Psat5g089880 Pisum sativum HOM05D003474 ORTHO05D003971 8.2e-24 114.8 212 34.0
Psat5g089720 Pisum sativum HOM05D003474 ORTHO05D003971 1.4e-23 114.0 212 32.5
ClCG01G018790 Citrullus lanatus HOM05D003474 ORTHO05D003971 2.4e-23 113.2 220 37.7
VMungo1383G0909 Vigna mungo HOM05D003474 ORTHO05D003971 3.1e-23 112.8 217 36.4
Medtr3g087330 Medicago truncatula HOM05D003474 ORTHO05D003971 4.1e-23 112.5 210 37.1
Psat5g089800 Pisum sativum HOM05D003474 ORTHO05D003971 7.0e-23 111.7 209 38.8
A06p31850 Brassica napus HOM05D003474 ORTHO05D003971 1.2e-22 110.9 149 37.6
Medtr3g087270 Medicago truncatula HOM05D003474 ORTHO05D003971 1.2e-22 110.9 210 36.2
Medtr3g087275 Medicago truncatula HOM05D003474 ORTHO05D003971 1.5e-22 110.5 212 34.4
Lalb_Chr08g0231081 Lupinus albus HOM05D003474 ORTHO05D003971 2.6e-22 109.8 219 35.6
Psat5g089840 Pisum sativum HOM05D003474 ORTHO05D003971 3.5e-22 109.4 212 33.0
DCAR_003504 Daucus carota HOM05D003474 ORTHO05D003971 4.5e-22 109.0 177 37.3
SalBow5G3492 Salvia bowleyana HOM05D003474 ORTHO05D003971 5.9e-22 108.6 151 42.4
Medtr3g087325 Medicago truncatula HOM05D003474 ORTHO05D003971 2.2e-21 106.7 212 36.3
Glyma.11G239900 Glycine max HOM05D003474 ORTHO05D003971 2.9e-21 106.3 224 37.5
PGSC0003DMG400001890 Solanum tuberosum HOM05D003474 ORTHO05D003971 3.8e-21 105.9 147 42.2
Solyc04g055140.1 Solanum lycopersicum HOM05D003474 ORTHO05D003971 6.5e-21 105.1 152 41.4
Aa31LG3G16930 Aethionema arabicum HOM05D003474 ORTHO05D003971 1.1e-20 104.4 213 35.2
Nitab4.5_0006517g0020 Nicotiana tabacum HOM05D003474 ORTHO05D003971 1.1e-20 104.4 152 44.1
TPR.G17829 Trifolium pratense HOM05D003474 ORTHO05D003971 4.2e-20 102.4 211 34.1
Lalb_Chr23g0277351 Lupinus albus HOM05D003474 ORTHO05D003971 5.5e-20 102.1 228 33.3
Solyc04g055150.1 Solanum lycopersicum HOM05D003474 ORTHO05D003971 7.2e-20 101.7 152 41.4
CANSAT73G0001 Cannabis sativa HOM05D003474 ORTHO05D003971 1.6e-19 100.5 219 34.2
Sopen04g025010 Solanum pennellii HOM05D003474 ORTHO05D003971 2.7e-19 99.8 152 40.8
Lalb_Chr08g0231071 Lupinus albus HOM05D003474 ORTHO05D003971 4.7e-19 99.0 220 35.0
TPR.G17835 Trifolium pratense HOM05D003474 ORTHO05D003971 6.1e-19 98.6 212 33.5
Sopen04g025000 Solanum pennellii HOM05D003474 ORTHO05D003971 2.6e-17 93.2 147 41.5
Peaxi162Scf00212g00111 Petunia axillaris HOM05D003474 ORTHO05D003971 9.7e-17 91.3 79 53.2
Solyc04g055130.1 Solanum lycopersicum HOM05D003474 ORTHO05D003971 3.7e-16 89.4 149 40.3
Peaxi162Scf00212g00105 Petunia axillaris HOM05D003474 ORTHO05D003971 5.3e-15 85.5 146 41.1
SEGI_20067 Sequoiadendron giganteum HOM05D003474 ORTHO05D003971 4.5e-14 82.4 129 39.5
BcaB08g37129 Brassica carinata HOM05D003474 ORTHO05D003971 1.0e-13 81.3 94 44.7
Phvul.001G251900 Phaseolus vulgaris HOM05D003474 ORTHO05D003971 6.5e-13 78.6 185 29.2
PGSC0003DMG400001892 Solanum tuberosum HOM05D003474 ORTHO05D003971 8.5e-13 78.2 141 37.6
TPR.G17838 Trifolium pratense HOM05D003474 ORTHO05D003971 1.9e-12 77.0 209 27.8
BcaC04g19323 Brassica carinata HOM05D003474 ORTHO05D003971 7.2e-12 75.1 86 44.2
Medtr3g087300 Medicago truncatula HOM05D003474 ORTHO05D003971 4.7e-11 72.4 206 28.6
Zm00001eb109720 Zea mays HOM05D003474 ORTHO05D003971 4.7e-11 72.4 119 31.9
SEGI_16345 Sequoiadendron giganteum HOM05D000003 ORTHO05D000004 1.4e-10 70.9 205 28.3
MELO3C007759.2 Cucumis melo HOM05D003474 ORTHO05D003971 1.5e-09 67.4 141 34.0
Nitab4.5_0000897g0040 Nicotiana tabacum HOM05D003474 ORTHO05D003971 3.7e-08 62.8 109 34.9


User provided reference genes

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