Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0003853 Camellia sinensis var. sinensis HOM05D005516 ORTHO05D006713 2.5e-70 268.9 156 100.0
CSS0039228 Camellia sinensis var. sinensis HOM05D005516 ORTHO05D006713 6.7e-55 217.6 158 86.1
CSS0031486 Camellia sinensis var. sinensis HOM05D005516 ORTHO05D006713 5.5e-41 171.4 91 91.2
Rhsim08G0097500 Rhododendron simsii HOM05D005516 ORTHO05D006713 4.3e-38 161.8 87 88.5
vmacro08774 Vaccinium macrocarpon HOM05D005516 ORTHO05D006713 5.7e-38 161.4 89 86.5
Dinv13791 Davidia involucrata HOM05D005516 ORTHO05D006713 2.8e-37 159.1 87 86.2
Hma1.2p1_0526F.1_g172920 Hydrangea macrophylla HOM05D005516 ORTHO05D006713 1.8e-36 156.4 88 84.1
Gorai.013G196100 Gossypium raimondii HOM05D005516 ORTHO05D006713 2.4e-36 156.0 90 80.0
Hma1.2p1_0526F.1_g172910 Hydrangea macrophylla HOM05D005516 ORTHO05D006713 2.4e-36 156.0 86 86.0
Actinidia06205 Actinidia chinensis HOM05D005516 ORTHO05D006713 1.2e-35 153.7 84 89.3
COL.COLO4_20092 Corchorus olitorius HOM05D005516 ORTHO05D006713 2.6e-35 152.5 88 81.8
Cfa017721 Carpinus fangiana HOM05D005516 ORTHO05D006713 3.4e-35 152.1 85 85.9
vmacro04358 Vaccinium macrocarpon HOM05D005516 ORTHO05D006713 4.5e-35 151.8 89 80.9
GSVIVG01029962001 Vitis vinifera HOM05D005516 ORTHO05D006713 5.9e-35 151.4 84 88.1
ClCG04G004680 Citrullus lanatus HOM05D005516 ORTHO05D006713 1.0e-34 150.6 95 77.9
vmacro18891 Vaccinium macrocarpon HOM05D005516 ORTHO05D006713 1.3e-34 150.2 89 79.8
Nitab4.5_0000613g0140 Nicotiana tabacum HOM05D005516 ORTHO05D006713 2.2e-34 149.4 83 81.9
PSO339G3932 Papaver somniferum HOM05D005516 ORTHO05D006713 2.2e-34 149.4 88 78.4
Atru.chr2.1522 Acer truncatum HOM05D005516 ORTHO05D006713 2.9e-34 149.1 86 81.4
PGSC0003DMG400028211 Solanum tuberosum HOM05D005516 ORTHO05D006713 2.9e-34 149.1 87 78.2
Duzib106G1703 Durio zibethinus HOM05D005516 ORTHO05D006713 6.5e-34 147.9 87 79.3
Sopen10g031880 Solanum pennellii HOM05D005516 ORTHO05D006713 6.5e-34 147.9 87 78.2
Glyma.16G035800 Glycine max HOM05D005516 ORTHO05D006713 8.5e-34 147.5 89 77.5
CiPaw.09G166400 Carya illinoinensis HOM05D005516 ORTHO05D006713 1.4e-33 146.7 85 81.2
Solyc10g081380.2 Solanum lycopersicum HOM05D005516 ORTHO05D006713 1.4e-33 146.7 87 77.0
Oeu044207.1 Olea europaea HOM05D005516 ORTHO05D006713 1.9e-33 146.4 89 80.9
CAN.G128.137 Capsicum annuum HOM05D005516 ORTHO05D006713 3.2e-33 145.6 87 75.9
Hma1.2p1_0106F.1_g051205 Hydrangea macrophylla HOM05D005516 ORTHO05D006713 3.2e-33 145.6 86 80.2
Thecc.05G241500 Theobroma cacao HOM05D005516 ORTHO05D006713 3.2e-33 145.6 86 81.4
Peaxi162Scf00575g00619 Petunia axillaris HOM05D005516 ORTHO05D006713 4.2e-33 145.2 87 77.0
Haze_20402 Corylus avellana HOM05D005516 ORTHO05D006713 9.4e-33 144.1 83 84.3
arahy.Tifrunner.gnm1.ann1.BMR428 Arachis hypogaea HOM05D005516 ORTHO05D006713 1.2e-32 143.7 80 82.5
MELO3C008865.2 Cucumis melo HOM05D005516 ORTHO05D006713 1.2e-32 143.7 81 84.0
CsaV3_4G031610 Cucumis sativus L. HOM05D005516 ORTHO05D006713 1.2e-32 143.7 81 84.0
PSO384G4582 Papaver somniferum HOM05D005516 ORTHO05D006713 1.2e-32 143.7 88 76.1
Sabra13G0057700 Salix brachista HOM05D005516 ORTHO05D006713 1.2e-32 143.7 84 82.1
Manes.08G152800 Manihot esculenta HOM05D005516 ORTHO05D006713 2.1e-32 142.9 84 81.0
Nitab4.5_0000811g0010 Nicotiana tabacum HOM05D005516 ORTHO05D006713 2.1e-32 142.9 80 81.2
QL07p017420 Quercus lobata HOM05D005516 ORTHO05D006713 2.1e-32 142.9 84 82.1
Ca_08316_v3 Cicer arietinum L. HOM05D005516 ORTHO05D006713 2.7e-32 142.5 80 82.5
Cc06_g21500 Coffea canephora HOM05D005516 ORTHO05D006713 2.7e-32 142.5 84 78.6
Duzib128G1828 Durio zibethinus HOM05D005516 ORTHO05D006713 2.7e-32 142.5 84 79.8
Eucgr.K01534 Eucalyptus grandis HOM05D005516 ORTHO05D006713 2.7e-32 142.5 85 78.8
CANSAT78G1214 Cannabis sativa HOM05D005516 ORTHO05D006713 4.6e-32 141.7 80 81.2
DCAR_020653 Daucus carota HOM05D005516 ORTHO05D006713 4.6e-32 141.7 82 81.7
Lalb_Chr14g0364851 Lupinus albus HOM05D005516 ORTHO05D006713 7.9e-32 141.0 80 82.5
Potri.019G040400 Populus trichocarpa HOM05D005516 ORTHO05D006713 1.0e-31 140.6 82 80.5
FAN19G1175 Fragaria x ananassa HOM05D005516 ORTHO05D006713 1.4e-31 140.2 81 81.5
Sed0005064 Sechium edule HOM05D005516 ORTHO05D006713 1.4e-31 140.2 81 80.2
Duzib177G0157 Durio zibethinus HOM05D005516 ORTHO05D006713 1.8e-31 139.8 84 78.6
TPR.G34794 Trifolium pratense HOM05D005516 ORTHO05D006713 1.8e-31 139.8 81 79.0
Psat3g086560 Pisum sativum HOM05D005516 ORTHO05D006713 2.3e-31 139.4 80 78.8
FAN26G2397 Fragaria x ananassa HOM05D005516 ORTHO05D006713 3.0e-31 139.0 80 82.5
TWI32G0326 Tripterygium wilfordii HOM05D005516 ORTHO05D006713 3.0e-31 139.0 83 79.5
TWI60G0181 Tripterygium wilfordii HOM05D005516 ORTHO05D006713 3.0e-31 139.0 82 80.5
FAN23G0165 Fragaria x ananassa HOM05D005516 ORTHO05D006713 3.9e-31 138.7 80 81.2
FvH4_1g29880 Fragaria vesca HOM05D005516 ORTHO05D006713 6.7e-31 137.9 80 81.2
Phvul.001G105600 Phaseolus vulgaris HOM05D005516 ORTHO05D006713 8.8e-31 137.5 88 77.3
Potri.013G066000 Populus trichocarpa HOM05D005516 ORTHO05D006713 8.8e-31 137.5 82 80.5
Sc07g0007460 Simmondsia chinensis HOM05D005516 ORTHO05D006713 8.8e-31 137.5 85 75.3
Gorai.004G252300 Gossypium raimondii HOM05D005516 ORTHO05D006713 1.1e-30 137.1 85 75.3
Lj1g0004780 Lotus japonicus HOM05D005516 ORTHO05D006713 1.1e-30 137.1 78 82.1
VMungo1383G1686 Vigna mungo HOM05D005516 ORTHO05D006713 1.1e-30 137.1 88 77.3
CARHR195330 Cardamine hirsuta HOM05D005516 ORTHO05D006713 1.5e-30 136.7 86 72.1
RcHm_v2.0_Chr3g0496031 Rosa chinensis HOM05D005516 ORTHO05D006713 1.5e-30 136.7 80 81.2
Hund20711 Selenicereus undatus HOM05D005516 ORTHO05D006713 1.5e-30 136.7 74 82.4
Ciclev10022543m.g Citrus clementina HOM05D005516 ORTHO05D006713 2.0e-30 136.3 85 77.6
Sp6g26410 Schrenkiella parvula HOM05D005516 ORTHO05D006713 2.0e-30 136.3 80 75.0
AL6G28930 Arabidopsis lyrata HOM05D005516 ORTHO05D006713 2.5e-30 136.0 87 70.1
MSTRG.6254 Avicennia marina HOM05D005516 ORTHO05D006713 3.3e-30 135.6 89 73.0
DCAR_016961 Daucus carota HOM05D005516 ORTHO05D006713 3.3e-30 135.6 82 73.2
HanXRQChr13g0406451 Helianthus annuus HOM05D005516 ORTHO05D006713 5.7e-30 134.8 84 72.6
Nitab4.5_0000404g0040 Nicotiana tabacum HOM05D005516 ORTHO05D006713 7.4e-30 134.4 82 75.6
THA.LOC104820795 Tarenaya hassleriana HOM05D005516 ORTHO05D006713 7.4e-30 134.4 80 76.2
ECA248G2342 Erigeron canadensis HOM05D005516 ORTHO05D006713 9.7e-30 134.0 85 72.9
AT5G17840 Arabidopsis thaliana HOM05D005516 ORTHO05D006713 1.3e-29 133.7 85 71.8
SGA_v2.0_scaffold69G23215 Striga asiatica HOM05D000039 ORTHO05D000370 1.3e-29 133.7 84 75.0
Gohir.A08G219566 Gossypium hirsutum HOM05D005516 ORTHO05D006713 1.7e-29 133.3 84 73.8
Lsat_1_v5_gn_5_154420 Lactuca sativa HOM05D005516 ORTHO05D006713 1.7e-29 133.3 85 71.8
Medtr7g086700 Medicago truncatula HOM05D005516 ORTHO05D006713 1.7e-29 133.3 74 83.8
arahy.Tifrunner.gnm1.ann1.253MNK Arachis hypogaea HOM05D005516 ORTHO05D006713 2.2e-29 132.9 77 80.5
Cpa.g.sc161.38 Carica papaya HOM05D005516 ORTHO05D006713 2.8e-29 132.5 83 74.7
BcaB01g04919 Brassica carinata HOM05D005516 ORTHO05D006713 3.7e-29 132.1 87 69.0
Glyma.19G117300 Glycine max HOM05D005516 ORTHO05D006713 3.7e-29 132.1 77 79.2
MD12G1011900 Malus domestica HOM05D005516 ORTHO05D006713 3.7e-29 132.1 83 74.7
Thhalv10014907m.g Eutrema salsugineum HOM05D005516 ORTHO05D006713 4.8e-29 131.7 85 70.6
MBI05_g16554_MAGBIO Magnolia biondii HOM05D005516 ORTHO05D006713 4.8e-29 131.7 82 73.2
Hund20712 Selenicereus undatus HOM05D005516 ORTHO05D006713 4.8e-29 131.7 74 81.1
Prupe.7G015800 Prunus persica HOM05D005516 ORTHO05D006713 6.3e-29 131.3 80 76.2
Zm00001eb052720 Zea mays HOM05D005516 ORTHO05D006713 8.2e-29 131.0 83 71.1
C02p25840 Brassica napus HOM05D005516 ORTHO05D006713 1.1e-28 130.6 88 68.2
CDE07G0498 Ceratophyllum demersum HOM05D005516 ORTHO05D006713 1.1e-28 130.6 88 70.5
Aa31LG11G11740 Aethionema arabicum HOM05D005516 ORTHO05D006713 1.4e-28 130.2 87 66.7
Carub.0006s1607 Capsella rubella HOM05D005516 ORTHO05D006713 1.4e-28 130.2 85 68.2
MD14G1009500 Malus domestica HOM05D005516 ORTHO05D006713 1.4e-28 130.2 80 73.8
SGA_v2.0_scaffold66G22373 Striga asiatica HOM05D005516 ORTHO05D006713 1.8e-28 129.8 91 68.1
BcaB01g05159 Brassica carinata HOM05D005516 ORTHO05D006713 4.5e-27 125.2 85 65.9
A03p08520 Brassica napus HOM05D005516 ORTHO05D006713 4.5e-27 125.2 85 67.1
C03p09930 Brassica napus HOM05D005516 ORTHO05D006713 4.5e-27 125.2 85 65.9
BolC3t13481H Brassica oleracea HOM05D005516 ORTHO05D006713 4.5e-27 125.2 85 65.9
BraA03t10176Z Brassica rapa HOM05D005516 ORTHO05D006713 4.5e-27 125.2 85 65.9
Ah.13g074870 Amaranthus hybridus HOM05D005516 ORTHO05D006713 5.9e-27 124.8 94 64.9
AUR62018088 Chenopodium quinoa HOM05D005516 ORTHO05D006713 7.7e-27 124.4 82 69.5
Gohir.A13G161100 Gossypium hirsutum HOM05D005516 ORTHO05D006713 7.7e-27 124.4 84 71.4
Gohir.D13G166400 Gossypium hirsutum HOM05D005516 ORTHO05D006713 7.7e-27 124.4 84 71.4
HPP92_000977 Vanilla planifolia HOM05D005516 ORTHO05D006713 1.0e-26 124.0 85 68.2
HPP92_001001 Vanilla planifolia HOM05D005516 ORTHO05D006713 2.2e-26 122.9 85 67.1
AUR62032011 Chenopodium quinoa HOM05D005516 ORTHO05D006713 2.9e-26 122.5 74 73.0
MSTRG.26204 Avicennia marina HOM05D005516 ORTHO05D006713 6.5e-26 121.3 89 65.2
SEGI_32239 Sequoiadendron giganteum HOM05D005516 ORTHO05D006713 8.5e-26 120.9 77 70.1
EL10Ac3g06621 Beta vulgaris HOM05D005516 ORTHO05D006713 1.1e-25 120.6 80 72.5
unitig_0.g583 Utricularia gibba HOM05D005516 ORTHO05D006713 4.2e-25 118.6 80 71.2
Zm00001eb218270 Zea mays HOM05D005516 ORTHO05D006713 4.2e-25 118.6 81 64.2
Os03g0656201 Oryza sativa ssp. japonica HOM05D005516 ORTHO05D006713 9.4e-25 117.5 78 67.9
BcaB05g23282 Brassica carinata HOM05D005516 ORTHO05D006713 1.1e-22 110.5 95 61.1
Lalb_Chr24g0401101 Lupinus albus HOM05D005516 ORTHO05D006713 4.4e-22 108.6 62 82.3
Aqoxy1G00508 Aquilegia oxysepala HOM05D005516 ORTHO05D006713 9.7e-22 107.5 73 69.9
Pp3c8_890 Physcomitrium patens HOM05D005516 ORTHO05D006713 1.7e-21 106.7 72 69.4
Actinidia07963 Actinidia chinensis HOM05D005516 ORTHO05D006713 2.8e-21 105.9 60 85.0
Peaxi162Scf00575g00620 Petunia axillaris HOM05D005516 ORTHO05D006713 2.0e-19 99.8 74 63.5
Mapoly0020s0169 Marchantia polymorpha HOM05D005516 ORTHO05D006713 1.7e-18 96.7 78 59.0
Oeu029775.1 Olea europaea HOM05D005516 ORTHO05D006713 2.2e-18 96.3 63 74.6
SalBow6G3354 Salvia bowleyana HOM05D005516 ORTHO05D006713 6.5e-18 94.7 56 75.0
Ciclev10013836m.g Citrus clementina HOM05D005516 ORTHO05D006713 1.6e-16 90.1 59 71.2
Gohir.D02G044500 Gossypium hirsutum HOM05D005516 ORTHO05D006713 1.4e-15 87.0 61 62.3
BcaC03g15036 Brassica carinata HOM05D005516 ORTHO05D006713 3.0e-15 85.9 62 62.9
BolC2t08658H Brassica oleracea HOM05D005516 ORTHO05D006713 3.0e-15 85.9 62 62.9
Sed0000674 Sechium edule HOM05D005516 ORTHO05D006713 3.9e-15 85.5 91 51.6
TAR633G1766 Trochodendron aralioides HOM05D005516 ORTHO05D006713 1.1e-14 84.0 45 86.7
Gohir.A06G040900 Gossypium hirsutum HOM05D005516 ORTHO05D006713 2.0e-14 83.2 59 62.7
Gohir.D05G109301 Gossypium hirsutum HOM05D005516 ORTHO05D006713 2.0e-14 83.2 59 62.7
CBR_g28089 Chara braunii HOM05D005516 ORTHO05D006713 7.7e-11 71.2 51 62.7
Nn6g32378 Nelumbo nucifera HOM05D005516 ORTHO05D006713 1.5e-09 67.0 49 65.3
SMO367G1142 Selaginella moellendorffii HOM05D005516 ORTHO05D006713 1.0e-07 60.8 50 58.0


User provided reference genes

Program Settings