Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0003829 Camellia sinensis var. sinensis HOM05D005176 ORTHO05D006482 3.1e-198 694.9 345 100.0
Rhsim13G0148600 Rhododendron simsii HOM05D005176 ORTHO05D006482 7.8e-157 557.4 348 81.0
Dinv20117 Davidia involucrata HOM05D005176 ORTHO05D006482 2.1e-154 549.3 349 79.9
vmacro03656 Vaccinium macrocarpon HOM05D005176 ORTHO05D006482 1.1e-150 537.0 360 78.1
Actinidia26877 Actinidia chinensis HOM05D005176 ORTHO05D006482 2.4e-150 535.8 335 81.8
TAR626G1813 Trochodendron aralioides HOM05D005176 ORTHO05D006482 2.3e-148 529.3 353 75.6
Hma1.2p1_0660F.1_g197450 Hydrangea macrophylla HOM05D005176 ORTHO05D006482 6.9e-145 517.7 350 75.4
Cpa.g.sc152.62 Carica papaya HOM05D005176 ORTHO05D006482 1.7e-143 513.1 349 75.9
Oeu002752.3 Olea europaea HOM05D005176 ORTHO05D006482 1.7e-143 513.1 339 73.7
Sabra11G0011400 Salix brachista HOM05D005176 ORTHO05D006482 1.2e-141 506.9 345 73.0
Sabra11G0013200 Salix brachista HOM05D005176 ORTHO05D006482 1.2e-141 506.9 345 73.0
CiPaw.09G100100 Carya illinoinensis HOM05D005176 ORTHO05D006482 3.0e-140 502.3 347 74.6
CANSAT56G2407 Cannabis sativa HOM05D005176 ORTHO05D006482 8.7e-140 500.7 347 72.9
QL03p008214 Quercus lobata HOM05D005176 ORTHO05D006482 1.9e-139 499.6 350 72.3
QL05p070074 Quercus lobata HOM05D005176 ORTHO05D006482 2.5e-139 499.2 350 72.3
Gohir.A05G173800 Gossypium hirsutum HOM05D005176 ORTHO05D006482 3.3e-139 498.8 344 73.5
Gorai.009G182200 Gossypium raimondii HOM05D005176 ORTHO05D006482 7.4e-139 497.7 346 73.7
Lj1A1237T47 Lonicera japonica HOM05D005176 ORTHO05D006482 9.6e-139 497.3 347 72.0
PSO832G1336 Papaver somniferum HOM05D005176 ORTHO05D006482 1.6e-138 496.5 361 70.9
Potri.011G021800 Populus trichocarpa HOM05D005176 ORTHO05D006482 6.2e-138 494.6 347 72.9
Solyc11g011990.2 Solanum lycopersicum HOM05D005176 ORTHO05D006482 1.1e-137 493.8 352 70.7
Haze_06890 Corylus avellana HOM05D005176 ORTHO05D006482 1.4e-137 493.4 358 71.2
PGSC0003DMG400013335 Solanum tuberosum HOM05D005176 ORTHO05D006482 2.4e-137 492.7 353 71.1
SalBow8G4341 Salvia bowleyana HOM05D005176 ORTHO05D006482 6.9e-137 491.1 295 79.7
Thecc.06G230100 Theobroma cacao HOM05D005176 ORTHO05D006482 1.5e-136 490.0 347 72.0
Sopen11g006800 Solanum pennellii HOM05D005176 ORTHO05D006482 3.4e-136 488.8 352 70.5
Prupe.4G013400 Prunus persica HOM05D005176 ORTHO05D006482 7.6e-136 487.6 345 71.9
Eucgr.E03960 Eucalyptus grandis HOM05D005176 ORTHO05D006482 1.7e-135 486.5 344 70.9
Migut.M01360 Erythranthe guttata HOM05D005176 ORTHO05D006482 2.9e-135 485.7 359 68.8
Ciclev10015546m.g Citrus clementina HOM05D005176 ORTHO05D006482 3.8e-135 485.3 341 72.4
CAN.G1186.9 Capsicum annuum HOM05D005176 ORTHO05D006482 6.5e-135 484.6 297 78.5
COL.COLO4_31852 Corchorus olitorius HOM05D005176 ORTHO05D006482 6.5e-135 484.6 347 71.2
RcHm_v2.0_Chr5g0001781 Rosa chinensis HOM05D005176 ORTHO05D006482 1.4e-134 483.4 352 71.3
Aqoxy1G04164 Aquilegia oxysepala HOM05D005176 ORTHO05D006482 2.5e-134 482.6 357 68.9
Cc09_g01070 Coffea canephora HOM05D005176 ORTHO05D006482 2.5e-134 482.6 353 69.7
MD10G1328600 Malus domestica HOM05D005176 ORTHO05D006482 3.2e-134 482.3 347 69.5
MSTRG.16005 Avicennia marina HOM05D005176 ORTHO05D006482 4.2e-134 481.9 335 70.7
Nn1g03357 Nelumbo nucifera HOM05D005176 ORTHO05D006482 4.2e-134 481.9 294 79.3
Gohir.D05G176800 Gossypium hirsutum HOM05D005176 ORTHO05D006482 1.2e-133 480.3 346 72.3
Cfa000134 Carpinus fangiana HOM05D005176 ORTHO05D006482 2.1e-133 479.6 334 73.7
FvH4_3g01250 Fragaria vesca HOM05D005176 ORTHO05D006482 2.1e-133 479.6 356 70.2
Thhalv10025624m.g Eutrema salsugineum HOM05D005176 ORTHO05D006482 2.7e-133 479.2 302 76.2
TWI63G1683 Tripterygium wilfordii HOM05D005176 ORTHO05D006482 3.5e-133 478.8 347 69.5
MELO3C021713.2 Cucumis melo HOM05D005176 ORTHO05D006482 7.9e-133 477.6 343 69.7
DCAR_004870 Daucus carota HOM05D005176 ORTHO05D006482 7.9e-133 477.6 319 72.4
Manes.16G002000 Manihot esculenta HOM05D005176 ORTHO05D006482 6.7e-132 474.6 345 71.6
Sc05g0009510 Simmondsia chinensis HOM05D005176 ORTHO05D006482 6.7e-132 474.6 344 70.1
TWI38G1933 Tripterygium wilfordii HOM05D005176 ORTHO05D006482 6.7e-132 474.6 347 69.5
Hund21443 Selenicereus undatus HOM05D005176 ORTHO05D006482 8.7e-132 474.2 299 77.9
Atru.chr10.2310 Acer truncatum HOM05D005176 ORTHO05D006482 3.3e-131 472.2 335 71.9
AUR62012769 Chenopodium quinoa HOM05D005176 ORTHO05D006482 5.7e-131 471.5 349 71.1
FAN25G2381 Fragaria x ananassa HOM05D005176 ORTHO05D006482 9.6e-131 470.7 364 68.1
EL10Ac8g20147 Beta vulgaris HOM05D005176 ORTHO05D006482 1.3e-130 470.3 352 70.7
THA.LOC104812984 Tarenaya hassleriana HOM05D005176 ORTHO05D006482 1.6e-130 469.9 303 73.9
AL7G31370 Arabidopsis lyrata HOM05D005176 ORTHO05D006482 2.1e-130 469.5 303 75.2
PGR042G2916 Punica granatum HOM05D005176 ORTHO05D006482 2.1e-130 469.5 347 69.7
Sp7g20380 Schrenkiella parvula HOM05D005176 ORTHO05D006482 2.1e-130 469.5 302 73.8
arahy.Tifrunner.gnm1.ann1.E5J967 Arachis hypogaea HOM05D005176 ORTHO05D006482 2.8e-130 469.2 340 70.6
arahy.Tifrunner.gnm1.ann1.8PRB68 Arachis hypogaea HOM05D005176 ORTHO05D006482 3.7e-130 468.8 340 70.3
Glyma.09G008500 Glycine max HOM05D005176 ORTHO05D006482 5.3e-129 464.9 293 76.1
CARHR229150 Cardamine hirsuta HOM05D005176 ORTHO05D006482 2.0e-128 463.0 348 67.8
Lsat_1_v5_gn_7_14460 Lactuca sativa HOM05D005176 ORTHO05D006482 2.0e-128 463.0 346 68.2
Glyma.15G112900 Glycine max HOM05D005176 ORTHO05D006482 2.6e-128 462.6 293 75.8
Carub.0007s1906 Capsella rubella HOM05D005176 ORTHO05D006482 4.5e-128 461.8 306 72.9
Aa31LG6G4370 Aethionema arabicum HOM05D005176 ORTHO05D006482 5.9e-128 461.5 339 68.1
TPR.G13024 Trifolium pratense HOM05D005176 ORTHO05D006482 1.3e-127 460.3 292 74.7
Phvul.006G144800 Phaseolus vulgaris HOM05D005176 ORTHO05D006482 2.2e-127 459.5 304 73.0
Lalb_Chr15g0087861 Lupinus albus HOM05D005176 ORTHO05D006482 3.8e-127 458.8 347 68.0
Nitab4.5_0000143g0540 Nicotiana tabacum HOM05D005176 ORTHO05D006482 3.8e-127 458.8 353 68.6
BolC1t01601H Brassica oleracea HOM05D005176 ORTHO05D006482 5.0e-127 458.4 303 74.3
BcaNung03749 Brassica carinata HOM05D005176 ORTHO05D006482 8.5e-127 457.6 345 67.2
VMungo0540G1825 Vigna mungo HOM05D005176 ORTHO05D006482 1.1e-126 457.2 315 70.8
BcaC09g51146 Brassica carinata HOM05D005176 ORTHO05D006482 1.4e-126 456.8 344 68.6
Potri.004G002600 Populus trichocarpa HOM05D005176 ORTHO05D006482 1.4e-126 456.8 331 69.5
CsaV3_1G045890 Cucumis sativus L. HOM05D005176 ORTHO05D006482 2.5e-126 456.1 344 68.0
Ca_00707_v3 Cicer arietinum L. HOM05D005176 ORTHO05D006482 1.2e-125 453.8 302 72.5
Lj6g0018145 Lotus japonicus HOM05D005176 ORTHO05D006482 1.2e-125 453.8 344 68.9
C01p16510 Brassica napus HOM05D005176 ORTHO05D006482 1.6e-125 453.4 343 68.2
Sabra04G0001100 Salix brachista HOM05D005176 ORTHO05D006482 1.6e-125 453.4 351 67.5
Medtr2g025140 Medicago truncatula HOM05D005176 ORTHO05D006482 2.7e-125 452.6 292 72.9
Psat1g177440 Pisum sativum HOM05D005176 ORTHO05D006482 2.7e-125 452.6 291 73.9
BraA01t01306Z Brassica rapa HOM05D005176 ORTHO05D006482 1.0e-124 450.7 296 73.6
PSO210G5061 Papaver somniferum HOM05D005176 ORTHO05D006482 1.3e-124 450.3 360 67.2
A01p13630 Brassica napus HOM05D005176 ORTHO05D006482 8.7e-124 447.6 295 73.2
unitig_748.g7945 Utricularia gibba HOM05D005176 ORTHO05D006482 1.9e-123 446.4 295 74.2
HanXRQChr05g0129171 Helianthus annuus HOM05D005176 ORTHO05D006482 5.7e-123 444.9 309 71.2
AT4G22260 Arabidopsis thaliana HOM05D005176 ORTHO05D006482 1.1e-121 440.7 277 75.8
SGA_v2.0_scaffold7G03794 Striga asiatica HOM05D005176 ORTHO05D006482 2.0e-120 436.4 305 69.5
Sed0020812 Sechium edule HOM05D005176 ORTHO05D006482 5.0e-119 431.8 344 63.7
Nitab4.5_0001198g0240 Nicotiana tabacum HOM05D005176 ORTHO05D006482 1.6e-117 426.8 293 74.1
ATR1128G104 Amborella trichopoda HOM05D005176 ORTHO05D006482 4.6e-117 425.2 298 69.8
GSVIVG01006689001 Vitis vinifera HOM05D005176 ORTHO05D006482 1.8e-116 423.3 287 74.6
TAR624G0457 Trochodendron aralioides HOM05D005176 ORTHO05D006482 2.3e-116 422.9 226 86.3
MELO3C021708.2 Cucumis melo HOM05D005176 ORTHO05D006482 1.5e-115 420.2 395 57.5
Ah.09g234400 Amaranthus hybridus HOM05D005176 ORTHO05D006482 3.3e-115 419.1 301 72.1
Peaxi162Scf00063g00213 Petunia axillaris HOM05D005176 ORTHO05D006482 7.4e-115 417.9 352 62.8
Eucgr.E03967 Eucalyptus grandis HOM05D005176 ORTHO05D006482 2.5e-110 402.9 300 67.7
MD05G1354300 Malus domestica HOM05D005176 ORTHO05D006482 7.2e-110 401.4 344 62.2
CDE04G3552 Ceratophyllum demersum HOM05D005176 ORTHO05D006482 1.6e-109 400.2 369 57.5
Os04g0668900 Oryza sativa ssp. japonica HOM05D005176 ORTHO05D006482 1.6e-109 400.2 334 62.9
SMO200G0146 Selaginella moellendorffii HOM05D005176 ORTHO05D006482 1.4e-105 387.1 257 71.6
MBI16_g26179_MAGBIO Magnolia biondii HOM05D005176 ORTHO05D006482 9.1e-105 384.4 364 57.4
Zm00001eb066910 Zea mays HOM05D005176 ORTHO05D006482 1.9e-102 376.7 295 63.4
Pp3c1_30120 Physcomitrium patens HOM05D005176 ORTHO05D006482 4.2e-102 375.6 328 58.2
Mapoly0050s0020 Marchantia polymorpha HOM05D005176 ORTHO05D006482 7.2e-102 374.8 252 70.6
FAN21G2852 Fragaria x ananassa HOM05D005176 ORTHO05D006482 9.7e-99 364.4 288 64.9
Pp3c2_11230 Physcomitrium patens HOM05D005176 ORTHO05D006482 6.3e-98 361.7 225 75.6
CBR_g16017 Chara braunii HOM05D005176 ORTHO05D006482 7.7e-96 354.8 221 74.2
PSO675G3403 Papaver somniferum HOM05D005176 ORTHO05D006482 6.5e-95 351.7 246 71.5
ClCG01G009770 Citrullus lanatus HOM05D005176 ORTHO05D006482 2.7e-93 346.3 286 63.6
Dinv13952 Davidia involucrata HOM05D005176 ORTHO05D006482 1.5e-91 340.5 238 75.6
Hma1.2p1_2753F.1_g327930 Hydrangea macrophylla HOM05D005176 ORTHO05D006482 6.3e-90 335.1 279 65.9
Duzib160G0919 Durio zibethinus HOM05D005176 ORTHO05D006482 8.8e-84 314.7 344 52.0
Zm00001eb066920 Zea mays HOM05D005176 ORTHO05D006482 2.3e-76 290.0 314 52.2
FAN21G2340 Fragaria x ananassa HOM05D005176 ORTHO05D006482 2.6e-75 286.6 234 66.7
HPP92_004745 Vanilla planifolia HOM05D005176 ORTHO05D006482 7.8e-72 275.0 247 61.1
MCO02G133 Micromonas commoda HOM05D005176 ORTHO05D006482 3.3e-70 269.6 214 61.2
PRCOL_00003826 Prasinoderma coloniale HOM05D005176 ORTHO05D006482 1.6e-69 267.3 236 55.9
SMO147G0375 Selaginella moellendorffii HOM05D005176 ORTHO05D006482 5.6e-62 242.3 203 55.7
Pp3c27_6780 Physcomitrium patens HOM05D005176 ORTHO05D006482 9.5e-62 241.5 204 55.9
Cre07.g350750 Chlamydomonas reinhardtii HOM05D005176 ORTHO05D006482 8.1e-61 238.4 224 53.6
AagrBONN_evm.TU.Sc2ySwM_362.2521 Anthoceros agrestis HOM05D005176 ORTHO05D006482 1.1e-60 238.0 200 56.0
Mapoly0003s0157 Marchantia polymorpha HOM05D005176 ORTHO05D006482 5.2e-60 235.7 190 59.5
Cre03.g172500 Chlamydomonas reinhardtii HOM05D005176 ORTHO05D006482 2.4e-57 226.9 196 57.7
GSVIVG01007272001 Vitis vinifera HOM05D005176 ORTHO05D006482 7.3e-54 215.3 291 46.4
MCO02G403 Micromonas commoda HOM05D005176 ORTHO05D006482 1.5e-51 207.6 191 53.9
AUR62021889 Chenopodium quinoa HOM05D005176 ORTHO05D006482 9.2e-49 198.4 349 41.0
Duzib235G1273 Durio zibethinus HOM05D005176 ORTHO05D006482 1.6e-48 197.6 111 82.9
Hma1.2p1_0298F.1_g117340 Hydrangea macrophylla HOM05D005176 ORTHO05D006482 2.4e-44 183.7 216 55.1
PRCOL_00006497 Prasinoderma coloniale HOM05D005176 ORTHO05D006482 6.6e-39 165.6 141 56.0
AagrBONN_evm.TU.Sc2ySwM_344.415 Anthoceros agrestis HOM05D005176 ORTHO05D006482 2.8e-37 160.2 104 66.3
SEGI_26802 Sequoiadendron giganteum HOM05D005176 ORTHO05D006482 4.9e-34 149.4 99 68.7
SEGI_01990 Sequoiadendron giganteum HOM05D005176 ORTHO05D006482 4.8e-29 132.9 68 85.3
HPP92_004744 Vanilla planifolia HOM05D005176 ORTHO05D006482 4.8e-29 132.9 94 64.9
QL03p008204 Quercus lobata HOM05D005176 ORTHO05D006482 2.4e-25 120.6 98 60.2
arahy.Tifrunner.gnm1.ann1.E0HWS1 Arachis hypogaea HOM05D005176 ORTHO05D038931 5.3e-20 102.8 94 61.7
A03p53390 Brassica napus HOM05D005176 ORTHO05D006482 9.0e-20 102.1 107 51.4
CBR_g12323 Chara braunii HOM05D005176 ORTHO05D006482 5.5e-17 92.8 65 61.5
Os03g0847500 Oryza sativa ssp. japonica HOM05D005176 ORTHO05D038931 2.7e-16 90.5 122 45.9
BraA03t14406Z Brassica rapa HOM05D005176 ORTHO05D006482 3.3e-14 83.6 93 51.6
Lj3g0010948 Lotus japonicus HOM05D005176 ORTHO05D006482 8.2e-13 79.0 37 89.2
CBR_g12320 Chara braunii HOM05D000019 ORTHO05D009492 4.1e-12 76.6 81 48.1
Eucgr.E03965 Eucalyptus grandis HOM05D005176 ORTHO05D006482 3.2e-09 67.0 44 63.6
BolC7t45661H Brassica oleracea HOM05D005176 ORTHO05D006482 6.1e-08 62.8 70 52.9
CBR_g12318 Chara braunii HOM05D000019 ORTHO05D008477 1.9e-06 57.8 40 57.5


User provided reference genes

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