Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0003793 Camellia sinensis var. sinensis HOM05D007493 ORTHO05D009465 9.3e-27 122.9 65 100.0
Lj4g0017514 Lotus japonicus HOM05D007493 ORTHO05D009465 1.5e-24 115.5 65 92.3
Nn3g16632 Nelumbo nucifera HOM05D007493 ORTHO05D009465 4.8e-23 110.5 65 83.1
COL.COLO4_23524 Corchorus olitorius HOM05D007493 ORTHO05D009465 6.2e-23 110.2 65 86.2
Glyma.05G172800 Glycine max HOM05D007493 ORTHO05D009465 8.1e-23 109.8 65 87.7
Glyma.08G130200 Glycine max HOM05D007493 ORTHO05D009465 8.1e-23 109.8 65 87.7
Atru.chr11.2184 Acer truncatum HOM05D007493 ORTHO05D009465 1.4e-22 109.0 65 89.2
Hma1.2p1_0079F.1_g041210 Hydrangea macrophylla HOM05D007493 ORTHO05D009465 1.8e-22 108.6 65 89.2
Atru.chr2.2324 Acer truncatum HOM05D007493 ORTHO05D009465 2.4e-22 108.2 65 87.7
Manes.13G020200 Manihot esculenta HOM05D007493 ORTHO05D009465 2.4e-22 108.2 65 86.2
Manes.12G019900 Manihot esculenta HOM05D007493 ORTHO05D009465 4.0e-22 107.5 65 83.1
Nn4g22523 Nelumbo nucifera HOM05D007493 ORTHO05D009465 6.9e-22 106.7 65 81.5
MD14G1166500 Malus domestica HOM05D007493 ORTHO05D009465 1.2e-21 105.9 65 81.5
Phvul.002G252800 Phaseolus vulgaris HOM05D007493 ORTHO05D009465 1.2e-21 105.9 63 84.1
Medtr8g089640 Medicago truncatula HOM05D007493 ORTHO05D009465 2.0e-21 105.1 62 83.9
Cpa.g.sc33.74 Carica papaya HOM05D007493 ORTHO05D009465 3.4e-21 104.4 65 83.1
PSO063G3855 Papaver somniferum HOM05D007493 ORTHO05D009465 4.5e-21 104.0 65 84.6
Thecc.02G266500 Theobroma cacao HOM05D007493 ORTHO05D009465 5.8e-21 103.6 65 84.6
MELO3C010701.2 Cucumis melo HOM05D007493 ORTHO05D009465 1.0e-20 102.8 65 86.2
Duzib251G0942 Durio zibethinus HOM05D007493 ORTHO05D009465 1.0e-20 102.8 65 83.1
MD06G1161100 Malus domestica HOM05D007493 ORTHO05D009465 1.0e-20 102.8 65 78.5
Manes.06G112900 Manihot esculenta HOM05D007493 ORTHO05D009465 1.0e-20 102.8 65 83.1
MBI10_g16722_MAGBIO Magnolia biondii HOM05D007493 ORTHO05D009465 1.3e-20 102.4 65 81.5
TAR622G0701 Trochodendron aralioides HOM05D007493 ORTHO05D009465 1.3e-20 102.4 65 83.1
arahy.Tifrunner.gnm1.ann1.48Y6QT Arachis hypogaea HOM05D007493 ORTHO05D009465 1.7e-20 102.1 65 83.1
CsaV3_2G025040 Cucumis sativus L. HOM05D007493 ORTHO05D009465 2.2e-20 101.7 65 84.6
arahy.Tifrunner.gnm1.ann1.SE4B7G Arachis hypogaea HOM05D007493 ORTHO05D009465 2.9e-20 101.3 59 86.4
Lalb_Chr07g0185531 Lupinus albus HOM05D007493 ORTHO05D009465 2.9e-20 101.3 62 82.3
Manes.14G056800 Manihot esculenta HOM05D007493 ORTHO05D009465 2.9e-20 101.3 65 81.5
Prupe.5G160800 Prunus persica HOM05D007493 ORTHO05D009465 2.9e-20 101.3 65 81.5
AL2G26520 Arabidopsis lyrata HOM05D007493 ORTHO05D009465 4.9e-20 100.5 65 81.5
AT1G67785 Arabidopsis thaliana HOM05D007493 ORTHO05D009465 4.9e-20 100.5 65 81.5
PSO067G0033 Papaver somniferum HOM05D007493 ORTHO05D009465 4.9e-20 100.5 65 81.5
Atru.BG.141.p Acer truncatum HOM05D007493 ORTHO05D009465 6.5e-20 100.1 59 88.1
A07p32370 Brassica napus HOM05D007493 ORTHO05D009465 6.5e-20 100.1 65 80.0
BraA07t30860Z Brassica rapa HOM05D007493 ORTHO05D009465 6.5e-20 100.1 65 80.0
PGSC0003DMG400010781 Solanum tuberosum HOM05D007493 ORTHO05D009465 6.5e-20 100.1 65 80.0
CANSAT01G0706 Cannabis sativa HOM05D007493 ORTHO05D009465 8.4e-20 99.8 61 85.2
Lalb_Chr12g0204101 Lupinus albus HOM05D007493 ORTHO05D009465 8.4e-20 99.8 58 84.5
BcaB03g15163 Brassica carinata HOM05D007493 ORTHO05D009465 1.1e-19 99.4 65 80.0
BcaB05g24314 Brassica carinata HOM05D007493 ORTHO05D009465 1.1e-19 99.4 65 80.0
BcaC03g14872 Brassica carinata HOM05D007493 ORTHO05D009465 1.1e-19 99.4 65 80.0
BcaC08g46034 Brassica carinata HOM05D007493 ORTHO05D000035 1.1e-19 99.4 65 80.0
BcaC08g46204 Brassica carinata HOM05D001456 ORTHO05D009465 1.1e-19 99.4 65 80.0
A02p14480 Brassica napus HOM05D007493 ORTHO05D009465 1.1e-19 99.4 65 80.0
C02p23440 Brassica napus HOM05D007493 ORTHO05D009465 1.1e-19 99.4 65 80.0
C06p38280 Brassica napus HOM05D007493 ORTHO05D009465 1.1e-19 99.4 65 80.0
C06p42230 Brassica napus HOM05D007493 ORTHO05D009465 1.1e-19 99.4 65 80.0
BolC2t08476H Brassica oleracea HOM05D007493 ORTHO05D009465 1.1e-19 99.4 65 80.0
BraA02t06512Z Brassica rapa HOM05D007493 ORTHO05D009465 1.1e-19 99.4 65 80.0
BraA07t31062Z Brassica rapa HOM05D007493 ORTHO05D009465 1.1e-19 99.4 65 80.0
Carub.0002s1423 Capsella rubella HOM05D007493 ORTHO05D009465 1.1e-19 99.4 65 80.0
CARHR060410 Cardamine hirsuta HOM05D007493 ORTHO05D009465 1.1e-19 99.4 65 80.0
Thhalv10019416m.g Eutrema salsugineum HOM05D007493 ORTHO05D009465 1.1e-19 99.4 65 80.0
RcHm_v2.0_Chr7g0191781 Rosa chinensis HOM05D007493 ORTHO05D009465 1.1e-19 99.4 65 75.4
Duzib248G1419 Durio zibethinus HOM05D007493 ORTHO05D009465 1.4e-19 99.0 65 80.0
Peaxi162Scf00128g00547 Petunia axillaris HOM05D007493 ORTHO05D009465 1.4e-19 99.0 65 78.5
Aqoxy5G03641 Aquilegia oxysepala HOM05D007493 ORTHO05D009465 2.5e-19 98.2 63 81.0
Nitab4.5_0000041g0060 Nicotiana tabacum HOM05D007493 ORTHO05D009465 2.5e-19 98.2 65 78.5
Sed0018590 Sechium edule HOM05D007493 ORTHO05D009465 2.5e-19 98.2 65 80.0
Migut.K00631 Erythranthe guttata HOM05D007493 ORTHO05D009465 3.2e-19 97.8 65 78.5
THA.LOC104825545 Tarenaya hassleriana HOM05D007493 ORTHO05D009465 3.2e-19 97.8 65 78.5
TWI18G0390 Tripterygium wilfordii HOM05D007493 ORTHO05D009465 3.2e-19 97.8 65 80.0
Cfa009257 Carpinus fangiana HOM05D007493 ORTHO05D009465 5.5e-19 97.1 65 76.9
Haze_12286 Corylus avellana HOM05D007493 ORTHO05D009465 5.5e-19 97.1 65 76.9
Nitab4.5_0013418g0010 Nicotiana tabacum HOM05D007493 ORTHO05D009465 5.5e-19 97.1 65 76.9
TWI36G0140 Tripterygium wilfordii HOM05D007493 ORTHO05D009465 5.5e-19 97.1 65 80.0
CiPaw.05G177500 Carya illinoinensis HOM05D007493 ORTHO05D009465 7.1e-19 96.7 63 77.8
Sc11g0000840 Simmondsia chinensis HOM05D007493 ORTHO05D009465 7.1e-19 96.7 65 76.9
PGSC0003DMG400007257 Solanum tuberosum HOM05D007493 ORTHO05D009465 7.1e-19 96.7 65 78.5
Aa31LG4G12320 Aethionema arabicum HOM05D007493 ORTHO05D009465 9.3e-19 96.3 60 78.3
Gohir.D12G150200 Gossypium hirsutum HOM05D007493 ORTHO05D009465 1.6e-18 95.5 63 76.2
Gorai.008G161700 Gossypium raimondii HOM05D007493 ORTHO05D009465 1.6e-18 95.5 63 76.2
Gohir.A12G145600 Gossypium hirsutum HOM05D007493 ORTHO05D009465 2.1e-18 95.1 63 74.6
Lsat_1_v5_gn_4_3821 Lactuca sativa HOM05D007493 ORTHO05D009465 2.7e-18 94.7 65 75.4
PGR119G0352 Punica granatum HOM05D007493 ORTHO05D009465 4.6e-18 94.0 65 70.8
Ciclev10033289m.g Citrus clementina HOM05D007493 ORTHO05D009465 6.0e-18 93.6 63 74.6
Cc11_g16110 Coffea canephora HOM05D007493 ORTHO05D009465 1.0e-17 92.8 63 69.8
Lsat_1_v5_gn_3_30001 Lactuca sativa HOM05D007493 ORTHO05D009465 1.0e-17 92.8 65 72.3
SalBow8G1793 Salvia bowleyana HOM05D007493 ORTHO05D009465 1.3e-17 92.4 65 72.3
Gohir.D01G152700 Gossypium hirsutum HOM05D007493 ORTHO05D009465 1.8e-17 92.0 65 73.8
HPP92_009922 Vanilla planifolia HOM05D007493 ORTHO05D009465 1.8e-17 92.0 65 72.3
Os01g0908400 Oryza sativa ssp. japonica HOM05D007493 ORTHO05D009465 2.3e-17 91.7 60 73.3
Potri.015G087301 Populus trichocarpa HOM05D007493 ORTHO05D009465 3.9e-17 90.9 65 75.4
HanXRQChr17g0569621 Helianthus annuus HOM05D007493 ORTHO05D009465 5.1e-17 90.5 65 69.2
HanXRQChr12g0385761 Helianthus annuus HOM05D007493 ORTHO05D009465 6.7e-17 90.1 60 71.7
ATR0824G181 Amborella trichopoda HOM05D007493 ORTHO05D009465 8.7e-17 89.7 65 70.8
DCAR_026494 Daucus carota HOM05D007493 ORTHO05D009465 1.1e-16 89.4 65 73.8
Gorai.002G189100 Gossypium raimondii HOM05D007493 ORTHO05D009465 1.5e-16 89.0 65 72.3
ClCG08G017580 Citrullus lanatus HOM05D007493 ORTHO05D009465 1.9e-16 88.6 85 63.5
PGR102G3362 Punica granatum HOM05D007493 ORTHO05D009465 1.3e-15 85.9 62 69.4
SHI26864 Sapria himalayana HOM05D007493 ORTHO05D009465 2.4e-14 81.6 53 71.7
Dinv11035 Davidia involucrata HOM05D007493 ORTHO05D009465 5.0e-12 73.9 35 94.3
Zm00001eb365410 Zea mays HOM05D007493 ORTHO05D009465 9.3e-11 69.7 36 83.3
CSS0017909 Camellia sinensis var. sinensis HOM05D007493 ORTHO05D009465 2.1e-10 68.6 49 67.3
Solyc05g013905.1 Solanum lycopersicum HOM05D007493 ORTHO05D009465 2.7e-10 68.2 35 85.7
Ca_17793_v3 Cicer arietinum L. HOM05D007493 ORTHO05D009465 3.5e-10 67.8 62 62.9
GSVIVG01000581001 Vitis vinifera HOM05D007493 ORTHO05D009465 3.5e-10 67.8 63 54.0
BcaB03g15377 Brassica carinata HOM05D000053 ORTHO05D000035 2.3e-09 65.1 65 63.1
MD15G1332800 Malus domestica HOM05D007493 ORTHO05D009465 2.3e-09 65.1 39 79.5
MD03G1151700 Malus domestica HOM05D007493 ORTHO05D009465 4.3e-08 60.8 36 83.3
MD07G1129300 Malus domestica HOM05D007493 ORTHO05D009465 2.2e-07 58.5 38 76.3
Sabra15G0110700 Salix brachista HOM05D000069 ORTHO05D000060 6.3e-07 57.0 35 71.4


User provided reference genes

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